genome.fa.s15.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  162  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50927342--50927442	20	5.4	18	73	13	62	44	0	0	53	1.13
50927391--50927449	20	2.8	21	82	7	66	49	0	0	50	1.00
50927403--50927461	24	2.6	22	80	12	66	49	0	1	49	1.11
50927391--50927462	21	3.3	21	79	12	74	50	0	1	48	1.09
50938667--50938712	19	2.3	21	88	7	69	8	4	6	80	1.01
50940937--50941110	89	1.9	90	83	5	228	39	15	8	36	1.77
50941291--50941364	28	2.6	28	80	8	78	62	0	4	33	1.14
50941291--50941356	28	2.3	28	84	7	80	60	0	3	36	1.12
50941392--50941425	11	3.1	11	86	0	50	61	2	0	35	1.11
50941373--50941436	30	2.1	30	82	5	76	62	4	3	29	1.31
50941720--50941766	20	2.3	21	89	7	71	29	2	0	68	1.02
50943911--50943946	10	3.7	10	88	7	56	77	8	0	13	0.98
50943912--50943945	9	3.7	9	88	7	50	76	8	0	14	1.01
50948265--50948302	19	2.0	20	89	5	60	47	0	7	44	1.32
50951619--50951708	45	2.0	45	97	0	171	22	16	17	43	1.88
50955532--50955563	7	4.6	7	96	0	55	37	0	28	34	1.57
50975228--50975265	17	2.3	17	86	4	51	21	10	0	68	1.19
50975580--50975612	16	2.0	17	88	5	50	42	6	6	45	1.53
50986604--50987219	89	6.9	89	92	0	1009	30	17	25	27	1.97
50989087--50989119	16	2.0	17	88	5	50	42	6	6	45	1.53
50995364--50995403	21	1.9	21	89	0	62	22	20	5	52	1.65
51002377--51002446	36	1.9	37	91	2	115	48	2	1	47	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51005019--51005071	6	9.2	6	76	15	58	47	13	0	39	1.43
51005036--51005103	26	2.8	24	76	8	73	41	17	0	41	1.50
51005222--51005254	15	2.1	16	94	5	59	42	12	0	45	1.41
51006836--51007228	109	3.6	109	92	1	621	34	18	17	30	1.94
51008260--51008596	45	7.5	45	83	2	399	28	25	16	29	1.97
51008260--51008596	135	2.5	134	85	2	460	28	25	16	29	1.97
51014693--51014738	6	7.7	6	97	0	74	73	15	0	10	1.08
51014686--51014738	18	3.0	18	88	2	81	73	15	0	11	1.09
51014687--51014757	6	11.8	6	85	10	56	76	12	2	8	1.12
51014686--51014739	12	4.6	12	90	2	74	74	14	0	11	1.08
51016451--51016966	87	5.9	87	89	0	782	29	23	22	24	1.99
51018469--51018503	16	2.3	15	90	5	52	34	5	2	57	1.37
51020955--51020989	17	2.1	17	89	10	54	2	17	0	80	0.84
51024695--51024897	106	1.9	107	86	3	293	35	21	15	27	1.94
51025361--51025421	19	3.3	19	77	9	63	49	0	8	42	1.32
51025919--51025975	27	2.2	26	93	3	96	15	26	31	26	1.96
51026010--51026109	29	3.5	29	93	4	168	48	0	13	39	1.42
51026533--51026673	57	2.5	56	84	6	180	51	2	1	43	1.25
51026960--51027013	21	2.6	21	80	8	65	9	18	12	59	1.60
51037373--51037480	31	3.5	31	81	5	137	19	25	23	31	1.98
51037556--51037669	59	1.9	58	82	7	140	35	19	21	24	1.96
51044241--51044478	102	2.3	100	79	8	257	31	19	15	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51044440--51044712	102	2.6	102	78	11	279	31	19	17	31	1.95
51045637--51045936	101	3.0	100	85	5	408	32	17	20	29	1.96
51050838--51050952	40	3.0	40	73	12	123	26	19	17	37	1.93
51050805--51050976	76	2.3	76	83	7	224	23	22	19	34	1.96
51054177--51054375	28	7.1	28	85	0	236	34	11	25	28	1.90
51054174--51054375	56	3.6	56	86	0	260	35	10	25	28	1.90
51057519--51057559	18	2.3	18	100	0	82	9	9	34	46	1.70
51063336--51063381	18	2.5	18	78	21	51	45	0	0	54	0.99
51065054--51065096	21	2.0	21	90	0	68	32	11	11	44	1.77
51066034--51066064	16	1.9	16	93	0	53	9	9	9	70	1.33
51070498--51070610	37	3.1	37	76	13	99	39	2	5	52	1.38
51072044--51072205	57	2.8	57	97	0	297	44	7	17	30	1.76
51072188--51072225	13	3.0	13	96	3	69	68	0	15	15	1.22
51072188--51072225	6	6.2	6	93	6	67	68	0	15	15	1.22
51072448--51072507	30	2.0	30	96	0	111	25	13	10	51	1.71
51073697--51073749	23	2.2	24	83	6	72	47	15	11	26	1.79
51078059--51078316	80	3.3	78	85	4	331	37	3	17	41	1.68
51078677--51078903	31	7.2	30	75	15	167	28	7	20	43	1.79
51078675--51078904	33	7.2	33	76	15	216	28	7	20	43	1.79
51078675--51078882	64	3.3	64	93	0	346	27	8	20	43	1.81
51078662--51078903	64	3.8	64	90	2	335	28	7	19	43	1.78
51082921--51082986	32	2.1	32	97	0	123	30	6	16	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51083974--51084013	16	2.6	15	84	4	53	65	2	7	25	1.32
51083974--51084014	15	2.6	16	84	3	57	63	2	7	26	1.33
51089764--51089793	12	2.4	13	94	5	53	23	0	0	76	0.78
51102513--51102537	13	1.9	13	100	0	50	68	8	0	24	1.16
51102862--51102900	19	2.0	20	90	5	62	43	10	12	33	1.77
51102918--51102960	20	2.2	20	91	0	68	44	11	6	37	1.68
51103601--51103644	22	2.0	23	86	13	65	47	11	13	27	1.77
51103763--51103862	47	2.1	47	85	1	139	36	20	21	23	1.96
51105596--51105648	16	3.3	16	89	0	79	39	1	24	33	1.66
51105814--51105947	58	2.3	57	85	2	178	50	3	0	45	1.19
51105956--51105998	21	2.0	21	86	9	59	62	2	0	34	1.08
51114992--51115034	18	2.4	18	81	14	61	46	4	9	39	1.57
51115470--51115651	28	6.5	28	92	2	269	25	12	28	32	1.93
51123090--51123132	21	2.0	22	90	4	70	27	6	6	58	1.50
51127782--51127889	37	2.9	36	78	16	107	40	2	3	52	1.33
51129973--51130157	101	1.8	102	87	3	275	24	15	27	32	1.96
51129973--51130159	51	3.7	51	85	3	236	24	15	27	32	1.95
51130148--51130242	45	2.3	39	76	16	93	25	15	26	32	1.96
51130161--51130255	45	2.1	45	88	0	145	26	18	24	30	1.98
51134340--51134381	21	2.0	21	86	9	59	21	16	21	40	1.91
51139384--51139427	9	4.9	9	88	0	61	31	4	38	25	1.76
51150842--51150914	24	3.0	24	85	0	92	32	20	30	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51155861--51155923	18	3.5	18	71	0	54	44	3	31	20	1.67
51156125--51156162	5	7.6	5	93	0	67	21	2	18	57	1.52
51157078--51157132	17	3.2	17	76	0	56	18	3	5	72	1.18
51162701--51162735	18	1.9	18	94	0	61	28	34	14	22	1.93
51162886--51162945	21	2.7	23	78	14	65	35	10	13	41	1.78
51162968--51163192	111	2.0	112	92	2	373	31	19	14	34	1.92
51163222--51163256	17	2.1	17	100	0	70	34	42	0	22	1.54
51163321--51163379	30	2.0	30	89	0	91	25	25	16	32	1.97
51163331--51163384	15	3.7	15	78	4	58	25	25	18	29	1.98
51169074--51169170	24	4.0	24	90	0	158	11	47	5	36	1.62
51169958--51169990	8	4.0	8	96	4	57	0	15	24	60	1.35
51172921--51172990	27	2.5	28	79	6	81	25	2	20	51	1.61
51174189--51174225	17	2.1	18	85	14	51	67	2	0	29	1.04
51181944--51182107	80	2.0	81	96	1	303	34	15	10	39	1.82
51182689--51182779	48	1.9	47	90	2	146	39	26	15	18	1.90
51182750--51182789	21	1.9	21	89	0	62	42	27	12	17	1.85
51182947--51182989	7	6.1	7	100	0	86	41	27	0	30	1.56
51203484--51203523	16	2.5	16	91	0	71	35	5	32	27	1.79
51203505--51203597	44	2.1	44	86	6	125	31	5	27	35	1.80
51206669--51206698	13	2.3	13	94	0	51	66	16	10	6	1.41
51216168--51216354	60	3.0	60	79	12	168	40	16	4	38	1.70
51216453--51216491	19	2.1	18	85	4	51	76	7	0	15	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51231971--51232589	44	14.1	43	75	6	494	29	16	25	28	1.97
51231966--51232589	133	4.7	132	90	1	982	29	16	25	28	1.97
51231966--51232589	89	7.1	89	76	8	501	29	16	25	28	1.97
51231966--51232581	263	2.3	264	91	1	984	29	16	25	28	1.97
51232580--51232948	88	4.2	88	90	0	549	29	26	23	20	1.99
51232690--51232833	44	3.3	43	63	8	101	25	24	24	25	2.00
51233304--51233413	45	2.5	44	79	5	105	30	24	22	22	1.99
51236252--51236300	23	2.2	23	85	3	64	18	8	2	71	1.21
51237909--51237943	18	1.9	18	94	0	61	22	5	0	71	1.07
51240178--51240217	18	2.2	18	86	0	53	22	0	17	60	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216