genome.fa.s15.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  128  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40524410--40524458	23	2.0	26	88	11	77	48	0	20	30	1.50
40529090--40529327	41	5.7	41	73	8	140	37	20	18	23	1.94
40534581--40534758	27	6.6	27	82	3	115	29	28	15	26	1.96
40534602--40534757	82	1.9	81	88	3	233	29	28	15	26	1.96
40534581--40534757	54	3.3	54	81	6	205	29	28	15	26	1.96
40542667--40542844	27	6.6	27	84	3	205	29	28	15	26	1.96
40542688--40542843	82	1.9	81	88	3	233	29	28	15	26	1.96
40547968--40548008	22	1.9	21	85	5	55	21	2	24	51	1.60
40552317--40552618	152	2.0	152	96	0	550	30	10	22	37	1.87
40571378--40571561	50	3.7	49	79	6	185	27	22	27	22	1.99
40572856--40572880	13	1.9	13	100	0	50	56	4	16	24	1.57
40587916--40587966	23	2.2	23	89	0	57	41	19	7	31	1.80
40590802--40591120	158	2.0	158	95	0	566	40	9	21	28	1.85
40598719--40599112	196	2.0	196	91	0	635	30	25	13	30	1.94
40610630--40610674	18	2.5	18	92	0	72	31	20	8	40	1.83
40617202--40617226	13	1.9	13	100	0	50	64	0	0	36	0.94
40632273--40632418	28	5.2	28	74	8	118	30	23	13	31	1.94
40641003--40641068	18	3.5	19	73	20	59	25	3	6	65	1.30
40645835--40645911	38	2.1	37	97	2	145	42	16	11	28	1.84
40646120--40646160	21	2.0	21	85	9	57	43	2	7	46	1.44
40650132--40650303	88	2.0	88	92	0	290	31	26	4	37	1.77
40650350--40650448	27	3.6	26	78	11	101	28	20	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40667918--40668128	46	4.6	45	79	6	217	29	21	22	26	1.99
40668815--40669063	129	1.9	129	95	0	453	39	18	13	28	1.88
40690694--40690878	79	2.3	81	83	7	227	25	27	22	24	2.00
40690675--40690878	40	5.1	40	81	8	229	25	27	22	25	2.00
40701106--40701230	50	2.5	48	81	3	133	28	20	28	21	1.98
40705733--40705808	26	2.9	27	84	9	102	42	13	22	22	1.88
40705886--40705952	27	2.5	27	87	0	89	35	13	28	22	1.92
40710099--40710130	16	2.0	16	93	0	55	25	15	0	59	1.36
40710358--40710548	51	3.8	51	76	8	210	30	26	17	25	1.97
40710352--40710574	101	2.2	102	79	9	251	30	27	16	25	1.97
40713034--40713073	18	2.2	18	95	0	71	42	17	0	40	1.49
40722781--40722944	29	5.7	29	73	8	147	39	14	21	24	1.90
40722782--40723031	58	4.3	57	79	8	177	38	14	24	22	1.92
40722876--40723031	29	5.4	29	74	11	140	37	14	26	20	1.92
40731743--40731784	20	2.2	19	87	12	59	16	21	4	57	1.58
40732548--40732655	25	4.4	24	77	10	76	27	19	23	29	1.98
40732565--40732655	25	3.7	25	82	7	89	27	19	25	27	1.99
40740213--40740246	16	2.1	17	94	5	61	47	20	5	26	1.73
40741509--40741582	30	2.5	28	81	14	85	43	1	9	45	1.44
40742362--40742393	16	2.0	16	93	0	55	53	0	0	46	1.00
40742424--40742494	31	2.3	29	79	13	79	35	5	2	56	1.38
40743915--40743959	6	8.2	6	85	14	53	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40743918--40743958	5	7.8	5	89	5	55	0	19	0	80	0.71
40743915--40743958	11	4.1	11	82	5	54	0	20	0	79	0.73
40744420--40744670	133	1.9	130	84	9	334	37	19	11	31	1.87
40746123--40746166	14	3.0	14	78	12	52	79	2	6	11	1.01
40746851--40746926	38	2.0	38	92	0	125	44	17	5	32	1.71
40746953--40746986	18	1.9	18	88	5	52	26	26	0	47	1.53
40747105--40747139	18	2.0	17	88	5	52	40	0	5	54	1.24
40755254--40755393	45	3.1	45	83	0	181	44	14	20	20	1.86
40756498--40756556	28	2.1	29	87	3	84	23	16	20	38	1.92
40756568--40756621	27	2.0	28	85	10	76	27	14	14	42	1.85
40756581--40756671	28	3.2	28	78	10	96	26	21	10	40	1.87
40769356--40769629	137	2.0	138	82	3	329	30	24	21	22	1.99
40771732--40771764	16	2.1	16	100	0	66	54	21	0	24	1.45
40774710--40774797	35	2.4	36	87	7	117	23	13	20	42	1.88
40776184--40776245	29	2.1	29	90	0	97	40	9	11	38	1.74
40778723--40778776	23	2.4	23	96	3	101	31	3	35	29	1.75
40790490--40790673	29	6.3	29	84	2	226	35	10	27	26	1.90
40790515--40790704	87	2.2	87	92	0	308	35	10	28	25	1.89
40790490--40790704	29	7.4	29	81	3	146	35	10	27	25	1.89
40799170--40799265	48	2.0	48	100	0	192	25	8	25	41	1.83
40809884--40810014	67	2.0	67	95	0	235	22	17	31	29	1.96
40813833--40813877	20	2.5	17	76	16	54	35	4	20	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40813836--40813875	20	2.0	20	95	0	71	32	5	17	45	1.70
40814231--40814467	23	10.3	23	84	3	246	21	14	18	45	1.84
40814231--40814467	46	5.2	46	84	4	273	21	14	18	45	1.84
40814231--40814460	69	3.3	69	86	3	293	21	14	17	46	1.84
40817688--40817725	18	2.1	19	90	5	60	81	0	0	18	0.69
40818804--40818860	20	2.8	20	100	0	114	50	8	3	36	1.50
40818799--40818879	20	4.2	19	89	4	101	54	6	2	37	1.39
40818798--40818888	20	4.7	20	86	4	78	54	5	2	37	1.36
40819051--40819081	16	1.9	16	93	0	53	35	6	9	48	1.62
40833677--40833705	14	2.1	14	100	0	58	55	13	13	17	1.70
40834016--40834054	20	2.0	20	94	0	69	43	15	12	28	1.83
40834411--40834477	33	2.0	33	88	5	100	32	23	5	37	1.79
40854083--40854138	28	2.0	28	85	0	76	35	14	1	48	1.54
40854095--40854157	13	4.7	13	75	13	56	30	12	1	55	1.47
40854039--40854193	41	3.8	42	80	7	169	35	14	2	47	1.58
40855539--40855577	20	2.0	20	90	10	62	15	23	5	56	1.59
40855769--40856011	50	4.8	50	78	4	220	24	27	20	27	1.99
40858258--40858403	74	2.0	74	97	0	274	28	19	20	31	1.97
40860064--40860111	13	3.7	12	81	13	51	43	20	0	35	1.52
40860266--40860335	25	2.8	25	76	2	70	34	20	14	31	1.92
40864636--40864861	39	5.7	39	84	3	231	23	29	15	32	1.95
40864642--40864861	79	2.8	79	82	4	232	22	30	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40865140--40865182	23	1.9	22	86	13	61	30	4	25	39	1.76
40869089--40869121	15	2.1	16	88	5	50	30	6	18	45	1.73
40883045--40883311	81	3.3	80	85	4	376	41	22	16	18	1.90
40883045--40883311	27	9.9	26	85	6	338	41	22	16	18	1.90
40895641--40895720	24	3.5	21	74	15	70	77	2	5	15	1.04
40895696--40895725	14	2.2	13	94	5	51	80	0	0	20	0.72
40897256--40897426	50	3.4	50	80	6	177	18	28	23	30	1.97
40907734--40907878	72	2.0	72	100	0	290	20	9	34	35	1.86
40934201--40934260	30	2.0	30	100	0	120	26	23	16	33	1.96
40939644--40939688	21	2.1	21	84	8	56	33	4	4	57	1.38
40940183--40940213	7	4.4	7	100	0	62	45	25	0	29	1.54
40949302--40950043	47	15.6	47	92	2	1205	33	8	28	29	1.86
40949302--40950043	96	7.8	94	94	1	1205	33	8	28	29	1.86
40949302--40950043	143	5.2	143	92	2	1194	33	8	28	29	1.86
40950162--40950263	37	2.8	37	89	0	150	26	17	28	27	1.98
40955509--40955574	30	2.2	30	81	7	73	33	9	27	30	1.88
40955918--40956155	50	4.6	50	85	3	278	28	21	28	21	1.99
40959821--40959939	51	2.3	49	79	8	130	25	13	29	31	1.94
40959942--40960033	45	2.0	45	89	0	139	27	15	23	33	1.95
40963418--40963447	13	2.3	13	94	0	51	43	3	0	53	1.17
40967616--40967702	29	3.0	29	80	8	90	35	4	25	34	1.77
40969928--40969963	16	2.2	17	90	5	56	36	0	52	11	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40972245--40972271	14	1.9	14	100	0	54	18	0	22	59	1.38
40978626--40978650	8	3.1	8	100	0	50	12	0	0	88	0.53
40991620--40991717	27	3.5	28	88	2	126	27	13	27	31	1.94
40991648--40991731	27	3.0	27	87	5	96	29	11	25	33	1.91
40997742--40997958	39	5.6	39	89	4	339	47	16	3	32	1.63
40997742--40997958	78	2.8	78	97	0	398	47	16	3	32	1.63
41004124--41004247	28	4.5	28	86	3	162	31	20	25	22	1.98
41004383--41004425	20	2.2	20	91	0	68	25	13	11	48	1.77
41005042--41005092	26	2.0	26	96	0	93	39	27	17	15	1.90
41005245--41005440	27	7.3	27	80	5	209	17	19	19	42	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216