genome.fa.s15.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  20  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6205360--6205397	17	2.2	18	85	4	51	31	0	5	63	1.17
6205571--6205623	26	2.0	26	89	7	81	37	1	0	60	1.08
6205534--6205654	10	13.0	9	71	11	84	38	2	4	54	1.33
6207042--6207082	18	2.2	19	87	12	59	60	9	4	24	1.47
6213798--6213837	18	2.1	20	86	9	57	57	0	2	40	1.12
6213989--6214056	24	2.8	24	86	2	82	47	1	30	20	1.59
6214768--6215047	94	2.9	94	80	5	303	38	3	17	39	1.69
6214987--6215011	7	3.6	7	100	0	50	12	0	40	48	1.40
6215080--6215506	126	3.4	126	92	0	694	31	19	22	26	1.98
6219392--6219451	11	5.4	11	87	2	75	45	0	31	23	1.53
6219433--6219460	12	2.3	12	100	0	56	50	0	28	21	1.49
6219392--6219462	22	3.2	20	76	20	63	46	0	29	23	1.53
6234560--6234668	54	2.0	54	96	0	200	35	22	21	21	1.96
6241024--6241333	151	2.0	152	88	0	451	26	27	17	29	1.97
6246432--6246463	14	2.4	14	94	5	57	34	18	12	34	1.89
6257871--6257906	18	1.9	19	88	5	56	58	2	5	33	1.36
6260128--6260342	112	1.9	113	92	0	360	41	13	11	32	1.81
6262137--6262185	15	3.3	15	72	16	57	26	0	10	63	1.26
6262535--6262566	16	2.0	16	93	0	55	43	34	9	12	1.75
6262682--6262847	83	2.0	83	97	0	314	39	16	9	34	1.81
6264905--6264978	19	3.8	19	78	7	94	40	10	13	35	1.80
6266313--6266509	98	2.0	98	94	0	349	28	9	23	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6274939--6275022	42	2.0	42	100	0	168	35	16	4	42	1.69
6275683--6275724	22	1.9	22	85	9	59	61	9	9	19	1.53
6277635--6277676	12	3.4	13	80	9	52	30	7	2	59	1.37
6289391--6289428	20	1.9	20	88	0	58	39	7	7	44	1.63
6290232--6290349	23	5.2	22	65	19	73	27	18	8	45	1.78
6290195--6290369	45	3.9	45	90	0	262	26	20	10	43	1.83
6290767--6290811	16	2.6	17	79	10	56	35	0	0	64	0.94
6290840--6290896	20	2.8	19	77	15	53	40	1	1	56	1.20
6290865--6290919	20	2.7	20	77	2	56	36	0	0	63	0.95
6290933--6290990	30	2.0	30	87	12	86	31	1	0	67	1.01
6290945--6290994	20	2.6	19	84	6	73	34	0	0	66	0.92
6290945--6290990	10	4.7	10	81	2	58	34	0	0	65	0.93
6291114--6291146	16	2.1	16	100	0	66	36	6	33	24	1.80
6291470--6291544	29	2.5	31	75	12	75	53	2	0	44	1.14
6291396--6291582	60	3.1	60	72	21	201	52	5	1	41	1.31
6294771--6294817	19	2.5	19	86	3	60	48	0	0	51	1.00
6295924--6296306	43	8.9	43	90	0	586	24	28	16	30	1.97
6296631--6296693	21	3.0	21	90	0	90	0	41	22	36	1.54
6299010--6299139	9	15.3	9	77	15	116	36	0	17	44	1.55
6299005--6299084	25	3.2	25	96	0	142	35	1	20	43	1.60
6299035--6299139	34	3.1	34	81	8	133	37	0	17	44	1.55
6299019--6299282	59	4.4	59	75	15	218	39	1	13	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6299127--6299311	34	5.6	34	79	16	194	42	2	10	44	1.51
6299195--6299323	9	15.2	9	67	17	71	41	0	13	45	1.43
6299196--6299264	25	2.8	25	88	0	93	43	0	11	44	1.40
6299166--6299298	59	2.3	59	93	2	223	42	0	11	45	1.39
6299019--6299360	180	1.9	180	94	0	603	40	2	13	44	1.56
6300804--6300833	13	2.2	14	94	5	53	56	16	13	13	1.67
6302395--6302663	7	36.9	7	70	13	96	43	31	2	23	1.67
6303852--6304001	41	3.7	41	86	3	212	24	30	20	26	1.98
6303850--6304026	82	2.2	83	80	9	211	25	28	19	26	1.98
6305193--6305409	41	5.3	41	90	0	335	24	27	18	29	1.98
6306918--6306942	13	1.9	13	100	0	50	68	24	0	8	1.16
6309011--6309113	41	2.5	40	81	9	145	27	26	22	24	2.00
6309166--6309296	40	3.3	39	80	10	149	22	24	22	31	1.98
6308879--6309269	154	2.5	151	80	6	421	29	24	19	26	1.99
6309193--6309337	40	3.6	39	81	3	139	22	24	23	30	1.99
6309166--6309336	80	2.1	80	79	6	186	22	23	22	30	1.99
6310488--6310530	18	2.3	19	84	8	61	44	0	0	55	0.99
6314179--6314223	18	2.6	18	86	10	58	42	6	15	35	1.73
6315657--6315683	12	2.2	12	100	0	54	0	7	7	85	0.75
6316866--6316939	5	14.8	5	72	8	53	5	22	18	52	1.66
6316866--6316913	20	2.4	20	80	13	62	2	22	18	56	1.52
6319153--6319220	23	2.8	24	80	14	70	32	17	26	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6326350--6326429	40	2.0	40	97	0	151	40	16	12	31	1.85
6332425--6332509	39	2.2	38	77	10	91	65	2	1	30	1.12
6332425--6332517	10	9.6	9	76	19	73	66	2	1	30	1.10
6332434--6332519	28	2.9	28	81	10	84	66	2	2	29	1.16
6335581--6335623	22	2.0	22	95	0	77	44	25	11	18	1.84
6335858--6335894	18	2.0	19	89	5	58	45	29	0	24	1.53
6343366--6343559	96	2.0	96	96	0	361	34	11	15	38	1.84
6345939--6345982	18	2.4	19	84	3	54	43	0	13	43	1.44
6346051--6346440	46	8.6	46	94	1	646	33	15	22	28	1.95
6348938--6348972	17	2.0	18	88	5	54	14	0	20	65	1.26
6350072--6350121	23	2.2	23	85	0	64	36	16	18	30	1.92
6350175--6350345	23	7.3	23	74	3	144	39	14	20	25	1.90
6350158--6350345	47	4.0	47	94	0	313	39	14	19	25	1.90
6350162--6350329	24	7.1	24	74	4	162	39	14	19	26	1.91
6351187--6351310	43	2.9	42	78	9	126	29	27	18	24	1.98
6357242--6357291	23	2.2	23	85	0	64	36	16	18	30	1.92
6357345--6357515	23	7.3	23	73	6	137	39	14	19	26	1.90
6357328--6357515	47	4.0	47	93	0	304	39	14	19	26	1.90
6357332--6357499	24	7.1	24	73	4	153	39	14	19	26	1.90
6358364--6358477	43	2.7	44	78	13	130	27	27	21	23	1.99
6359630--6359658	14	2.0	15	93	6	51	51	20	0	27	1.47
6361884--6361992	36	3.0	36	93	0	191	27	20	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6361956--6362074	46	2.6	46	94	0	202	28	21	12	36	1.90
6363698--6363744	24	1.9	24	86	4	67	36	0	38	25	1.56
6364747--6365102	27	13.2	27	81	3	351	44	20	15	19	1.86
6364747--6365102	81	4.4	79	83	3	408	44	20	15	19	1.86
6365337--6365413	26	3.0	26	84	3	102	16	22	25	35	1.95
6365506--6365599	28	3.4	28	81	7	120	23	24	22	29	1.99
6368233--6368580	27	12.9	27	79	1	320	44	20	14	19	1.87
6368222--6368580	109	3.3	109	79	5	370	44	20	14	20	1.86
6368835--6368884	26	2.0	24	81	11	57	16	18	26	40	1.90
6368987--6369078	28	3.3	28	83	7	116	25	21	22	30	1.99
6370716--6370791	23	3.3	23	90	1	118	30	26	21	22	1.99
6379227--6379286	30	2.0	30	93	0	102	50	15	3	31	1.60
6384561--6384664	49	2.1	49	92	0	172	31	7	8	51	1.61
6386046--6386088	21	2.0	21	86	8	61	34	0	6	58	1.25
6386117--6386317	28	6.9	28	67	19	83	42	0	3	53	1.21
6386053--6386291	119	2.0	119	97	1	453	42	0	4	51	1.28
6386223--6386270	18	2.7	18	87	6	62	43	0	2	54	1.12
6388199--6388239	18	2.2	20	82	8	50	65	7	0	26	1.18
6391429--6391492	31	2.0	33	93	6	114	31	17	9	42	1.81
6392376--6392417	19	2.2	19	86	4	57	40	0	9	50	1.35
6394191--6394231	18	2.2	18	87	12	57	65	9	2	21	1.34
6395361--6395385	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6403385--6403450	24	2.8	24	86	2	89	7	13	30	48	1.70
6403385--6403499	23	4.8	24	72	5	90	8	16	28	46	1.77
6411303--6411367	27	2.4	27	81	0	76	49	35	7	7	1.60
6411321--6411376	21	2.7	21	80	0	58	53	30	8	7	1.59
6414005--6414050	24	1.9	24	91	8	76	39	0	0	60	0.97
6414147--6414174	9	3.1	9	100	0	56	57	10	0	32	1.33
6414117--6414394	68	4.1	68	97	0	515	45	8	5	40	1.57
6414215--6414242	9	3.1	9	100	0	56	57	10	0	32	1.33
6414283--6414310	9	3.1	9	100	0	56	57	10	0	32	1.33
6414383--6414424	16	2.6	16	92	0	66	42	7	2	47	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216