genome.fa.s15.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  9  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3014664--3014741	24	3.1	24	72	16	77	33	23	17	25	1.96
3016898--3016944	13	3.5	13	80	13	51	29	2	25	42	1.67
3019030--3019079	21	2.4	21	80	6	57	36	14	42	8	1.74
3021453--3021487	17	1.9	19	88	11	56	45	2	5	45	1.41
3022752--3022814	18	3.6	18	71	16	51	65	1	1	31	1.12
3028628--3028668	20	2.0	20	95	0	73	34	7	7	51	1.58
3028853--3028877	10	2.5	10	100	0	50	0	8	0	92	0.40
3029249--3029329	41	2.0	40	80	2	90	58	14	9	17	1.63
3032589--3033506	475	2.0	460	80	10	1017	41	9	10	38	1.72
3034002--3034043	13	2.9	14	79	13	50	66	0	9	23	1.21
3038420--3038475	11	4.9	11	81	12	51	28	0	3	67	1.07
3038496--3038526	16	1.9	16	93	0	53	48	3	0	48	1.17
3040766--3040808	19	2.3	19	95	0	77	25	16	23	34	1.95
3040894--3040959	30	2.3	27	76	16	69	34	1	1	62	1.14
3048895--3049207	40	7.7	40	74	9	256	23	20	25	30	1.99
3048869--3049218	82	4.3	82	88	2	461	22	19	26	32	1.97
3049323--3049888	44	12.8	45	78	5	501	29	26	16	26	1.97
3049387--3049882	132	3.8	132	93	1	805	28	27	17	27	1.97
3049877--3050077	45	4.4	46	67	12	128	29	24	18	26	1.98
3049860--3050154	136	2.2	134	92	2	484	30	23	20	26	1.98
3049319--3050043	44	16.3	46	74	9	168	29	26	17	26	1.97
3050102--3050451	86	4.1	86	93	0	556	26	24	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3050177--3050397	42	5.2	42	61	20	107	24	23	25	26	2.00
3054571--3054614	19	2.3	20	84	7	56	40	11	20	27	1.86
3062057--3062127	34	2.1	34	100	0	142	36	8	11	43	1.71
3062064--3062138	34	2.4	29	78	19	96	36	8	10	45	1.68
3062358--3062402	18	2.5	17	79	10	54	53	2	2	42	1.25
3068443--3068536	35	2.7	34	80	4	107	53	13	6	26	1.64
3068823--3068955	70	1.9	68	83	3	167	54	15	9	21	1.67
3069672--3069737	28	2.4	28	89	0	105	33	15	19	31	1.93
3074065--3074108	19	2.4	17	85	14	52	70	2	2	25	1.10
3074062--3074115	19	2.7	20	74	23	51	64	3	1	29	1.21
3089418--3089590	68	2.5	69	84	2	206	30	15	21	32	1.94
3089594--3091019	72	19.7	72	94	2	2390	31	15	17	34	1.92
3089594--3091019	145	9.8	145	93	1	2414	31	15	17	34	1.92
3090967--3091394	54	8.0	54	88	6	633	28	15	17	38	1.91
3090967--3091394	212	2.0	213	94	1	752	28	15	17	38	1.91
3090973--3091394	158	2.7	158	90	4	631	28	15	18	37	1.91
3091672--3091766	30	3.2	30	78	3	102	29	20	3	47	1.65
3092145--3092187	22	2.0	22	85	0	59	67	4	25	2	1.22
3092290--3092354	29	2.3	29	78	7	71	70	0	29	0	0.87
3092288--3092353	11	5.8	11	73	18	55	69	0	30	0	0.88
3092786--3092823	20	1.9	20	88	0	58	36	13	7	42	1.73
3093018--3093053	17	2.2	17	90	5	56	36	8	8	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3093124--3093177	16	3.3	15	80	15	54	31	7	11	50	1.66
3094897--3094978	25	3.3	24	74	17	71	56	1	2	40	1.20
3098733--3098875	72	2.0	72	95	0	259	38	18	15	27	1.91
3101045--3101085	20	2.0	20	95	0	73	34	7	7	51	1.58
3101666--3101746	41	2.0	40	80	2	90	58	14	9	17	1.63
3105561--3105590	9	3.4	9	95	4	53	50	0	6	43	1.28
3111773--3111825	25	2.1	26	92	3	90	26	0	0	73	0.83
3111785--3111839	25	2.2	25	83	0	65	34	0	0	65	0.93
3116289--3116315	12	2.2	12	100	0	54	70	0	0	29	0.88
3119537--3119597	32	1.9	32	86	6	88	21	8	16	54	1.68
3122006--3122072	33	2.0	34	88	2	100	28	7	23	40	1.82
3127790--3127904	35	3.3	35	78	6	117	53	15	7	23	1.68
3131877--3131905	9	3.3	9	95	4	51	48	0	6	44	1.29
3140236--3140290	15	3.4	16	82	7	67	38	1	0	60	1.08
3141398--3141434	19	1.9	19	88	0	56	40	2	5	51	1.39
3152834--3153024	103	1.8	107	84	5	264	23	19	11	46	1.82
3153407--3153969	44	12.8	44	75	8	396	27	16	25	29	1.97
3153402--3153931	132	4.0	132	94	0	898	27	16	25	29	1.97
3153992--3154141	45	3.2	45	67	18	124	28	19	22	29	1.98
3153959--3154147	97	2.0	95	94	2	333	29	19	22	29	1.98
3155078--3155105	11	2.5	11	100	0	56	85	0	0	14	0.59
3155692--3155761	3	23.3	3	71	11	54	31	2	5	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3155705--3155764	22	2.8	22	85	7	70	33	3	8	55	1.47
3155728--3155772	22	2.0	23	83	12	58	31	2	11	55	1.47
3155932--3155971	19	2.0	19	85	9	53	32	10	10	47	1.70
3156004--3156040	19	1.9	19	88	0	56	40	2	5	51	1.39
3157794--3157836	19	2.3	19	95	0	77	34	23	16	25	1.95
3162722--3162750	9	3.3	9	95	4	51	44	6	0	48	1.29
3163123--3163165	19	2.3	18	81	18	52	27	2	2	67	1.15
3167241--3167304	28	2.3	28	91	0	101	32	20	14	32	1.92
3168015--3168124	35	3.2	34	76	6	98	21	8	13	56	1.63
3168019--3168151	70	1.9	68	83	3	167	21	9	15	54	1.67
3168488--3168519	15	2.1	15	100	0	64	28	12	9	50	1.71
3174655--3174725	34	2.1	34	100	0	142	43	11	8	36	1.71
3179970--3180513	195	2.8	195	99	0	1079	22	15	14	47	1.82
3183938--3184000	30	2.1	29	85	5	81	65	1	1	31	1.12
3184091--3184133	19	2.3	19	95	0	77	34	23	16	25	1.95
3186455--3186510	11	4.9	11	81	12	51	67	3	0	28	1.07
3192655--3192694	17	2.3	18	82	4	55	25	27	5	42	1.75
3195530--3195564	16	2.2	16	100	0	70	28	5	11	54	1.59
3197539--3197591	23	2.3	23	84	12	65	43	7	7	41	1.61
3197539--3197592	22	2.3	23	78	15	58	42	7	7	42	1.61
3208679--3208846	91	1.8	91	94	0	300	38	26	12	22	1.89
3212157--3212214	29	2.0	29	100	0	116	51	27	0	20	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3221507--3221587	26	3.2	25	78	13	69	25	3	3	66	1.25
3221549--3221600	24	2.1	25	82	3	61	30	5	3	59	1.39
3221547--3221604	25	2.3	26	79	8	66	34	5	3	56	1.38
3221776--3221810	17	2.0	18	94	5	63	34	5	2	57	1.37
3222798--3222825	12	2.3	12	100	0	56	21	0	0	78	0.75
3224758--3224843	3	28.7	3	85	0	100	59	2	6	31	1.37
3230560--3230592	17	1.9	17	88	11	50	45	9	6	39	1.61
3230963--3231005	19	2.3	18	81	18	52	27	2	2	67	1.15
3234900--3234924	3	8.3	3	100	0	50	32	36	0	32	1.58
3235549--3235612	28	2.3	28	91	0	101	34	20	12	32	1.90
3236323--3236432	35	3.2	34	76	6	98	21	8	13	56	1.63
3236751--3236873	35	3.6	33	76	8	106	26	7	13	52	1.65
3236746--3236860	35	3.3	35	78	6	110	24	7	13	53	1.66
3237726--3237768	11	4.0	11	78	3	52	27	2	48	20	1.62
3241810--3241866	18	3.2	18	87	0	87	31	15	24	28	1.96
3242399--3242441	11	4.0	11	84	3	61	30	2	46	20	1.63
3242399--3242441	21	2.0	21	90	4	68	30	2	46	20	1.63
3248350--3248420	34	2.1	34	100	0	142	43	11	8	36	1.71
3258869--3259453	195	3.0	195	98	1	1138	22	15	14	48	1.81
3259548--3259666	60	2.0	58	96	3	220	37	11	31	18	1.87
3259789--3259993	102	2.0	103	99	0	403	29	8	17	43	1.79
3262986--3263048	30	2.1	29	85	5	81	65	1	1	31	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3263137--3263179	19	2.3	19	95	0	77	34	23	16	25	1.95
3264919--3265243	162	2.0	164	96	3	611	42	11	6	39	1.68
3265336--3265379	16	2.8	16	82	3	54	63	6	0	29	1.20
3265597--3265627	16	1.9	16	93	0	53	48	0	3	48	1.17
3270197--3271677	805	1.8	797	90	4	2292	40	11	8	40	1.71
3275831--3275855	10	2.5	10	100	0	50	92	0	8	0	0.40
3276040--3276080	20	2.0	20	95	0	73	51	7	7	34	1.58
3281855--3281911	17	3.4	18	72	13	50	31	1	1	64	1.13
3282450--3282480	13	2.4	13	100	0	62	25	0	0	74	0.82
3284718--3284778	3	20.7	3	83	3	70	59	1	6	32	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216