genome.fa.s15.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  205  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63597307--63597339	17	1.9	17	93	0	57	51	0	0	48	1.00
63597363--63597405	18	2.4	18	76	0	50	51	2	0	46	1.13
63597363--63597402	20	2.0	20	85	4	55	47	2	0	50	1.14
63597399--63597452	19	2.9	18	81	5	63	35	0	3	61	1.14
63597994--63598024	11	2.8	11	95	0	53	74	0	3	22	0.96
63601378--63601541	90	1.8	90	83	0	220	35	9	28	25	1.88
63609060--63609109	9	5.6	9	75	17	50	64	2	0	34	1.05
63609086--63609129	21	2.1	21	82	0	52	59	0	0	40	0.98
63609064--63609150	29	3.0	29	73	17	74	58	1	0	40	1.05
63611792--63611819	5	5.6	5	100	0	56	21	0	0	78	0.75
63614007--63614122	51	2.3	50	92	1	187	28	24	14	32	1.94
63619583--63619641	24	2.6	24	78	7	70	28	30	18	22	1.97
63623825--63623867	22	1.9	23	86	13	63	58	2	4	34	1.32
63626652--63626720	16	4.2	16	92	3	120	24	1	37	36	1.65
63626652--63626720	33	2.1	32	94	2	120	24	1	37	36	1.65
63626956--63626990	18	2.0	17	88	5	52	54	0	0	45	0.99
63627076--63627110	18	2.0	17	88	5	52	54	0	0	45	0.99
63626939--63627201	120	2.2	120	99	0	517	48	5	1	44	1.36
63630226--63630335	33	3.3	33	81	11	136	31	8	17	42	1.78
63630282--63630384	51	2.0	50	94	5	181	28	7	18	45	1.77
63630451--63630631	86	2.1	86	98	1	355	47	7	4	40	1.52
63635426--63635471	24	1.9	24	81	0	56	52	4	0	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63635609--63635650	18	2.3	19	83	4	59	45	0	2	52	1.13
63636483--63636535	24	2.2	24	96	0	97	28	15	18	37	1.91
63648192--63648229	17	2.2	17	100	0	76	42	26	15	15	1.87
63649520--63649569	21	2.3	23	76	16	61	2	14	8	76	1.10
63649532--63649576	21	2.1	21	88	8	65	2	13	6	77	1.05
63664525--63664551	4	6.8	4	100	0	54	0	74	0	25	0.83
63675293--63675334	4	10.5	4	100	0	84	50	23	26	0	1.50
63678106--63678183	27	2.9	27	86	0	120	24	28	28	19	1.98
63681108--63681161	24	2.2	24	100	0	108	33	3	0	62	1.12
63681120--63681173	24	2.3	23	84	9	65	44	5	3	46	1.44
63681894--63682051	4	38.5	4	71	21	80	1	27	0	70	1.00
63681894--63682016	39	3.3	39	73	17	116	1	26	0	71	1.00
63681986--63682061	5	16.0	5	76	10	54	0	34	0	65	0.93
63681908--63682053	14	10.1	14	71	18	88	1	29	0	68	1.03
63681910--63682051	39	3.9	39	75	14	117	1	28	0	69	1.02
63681933--63682045	59	1.9	62	85	7	162	0	29	0	69	1.01
63682099--63682175	27	2.9	27	88	0	109	15	24	32	27	1.95
63682224--63682282	26	2.3	26	85	5	75	50	1	6	40	1.39
63682594--63682647	16	3.4	16	94	0	90	31	0	35	33	1.58
63682857--63682911	25	2.2	24	81	15	60	54	1	0	43	1.10
63683086--63683146	28	2.2	28	85	5	81	50	3	0	45	1.17
63683052--63683268	91	2.4	89	85	6	299	47	4	3	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63683086--63683228	44	3.2	42	70	20	119	48	2	2	46	1.28
63683093--63683249	47	3.4	47	68	15	128	49	3	1	44	1.31
63686173--63686230	9	6.4	9	95	0	98	24	10	27	37	1.88
63687330--63687423	30	3.1	30	93	1	152	25	25	6	42	1.78
63687340--63687417	15	5.2	15	70	11	70	25	23	7	43	1.80
63692003--63692110	15	7.2	15	71	12	87	26	22	7	43	1.79
63691993--63692116	30	4.1	30	93	1	203	26	24	6	42	1.78
63697420--63697509	45	2.0	45	88	0	135	23	15	15	45	1.84
63718004--63718028	9	2.8	9	100	0	50	8	0	0	92	0.40
63717904--63718127	109	2.0	112	90	7	357	32	15	13	39	1.86
63717905--63718135	117	2.0	109	89	8	347	31	15	12	40	1.85
63719890--63720055	83	2.0	82	90	3	262	46	13	6	33	1.68
63721025--63721082	29	2.0	29	100	0	116	17	10	20	51	1.74
63723958--63723996	20	2.0	20	89	0	60	48	12	10	28	1.74
63723980--63724019	14	2.9	14	84	0	53	42	17	7	32	1.77
63725633--63725690	29	2.0	30	86	3	82	25	6	17	50	1.71
63738351--63738378	4	7.0	4	100	0	56	25	0	25	50	1.50
63739426--63739518	43	2.2	43	98	0	177	47	20	21	10	1.80
63741577--63741601	8	3.1	8	100	0	50	28	0	12	60	1.32
63766382--63766433	24	2.2	24	100	0	104	51	13	19	15	1.75
63773618--63773686	24	3.0	22	80	16	79	75	0	4	20	0.97
63773618--63773654	13	3.0	13	84	11	51	72	0	5	21	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63781170--63781274	41	2.5	41	85	1	147	23	21	24	29	1.99
63781093--63781226	70	1.9	69	81	6	162	22	17	23	36	1.95
63781511--63781552	21	2.0	21	90	4	68	33	0	19	47	1.49
63781844--63781909	28	2.3	29	78	17	75	24	0	36	39	1.56
63781712--63781879	89	1.9	89	89	0	264	26	0	27	45	1.54
63783097--63783177	40	2.0	40	100	0	162	24	25	9	39	1.86
63783495--63783542	25	2.0	24	88	12	71	47	2	20	29	1.61
63787657--63787701	22	2.0	22	91	0	72	33	2	15	48	1.57
63791431--63791475	22	2.0	22	91	0	72	33	2	15	48	1.57
63792059--63792229	43	4.1	42	77	4	168	27	15	24	32	1.95
63797983--63798040	29	2.0	30	82	3	73	31	13	18	36	1.90
63805118--63805154	3	12.3	3	100	0	74	67	0	0	32	0.91
63806507--63806545	20	2.0	20	89	0	60	46	2	20	30	1.64
63808782--63808809	8	3.5	8	100	0	56	50	28	10	10	1.71
63809748--63809801	3	18.3	3	80	3	65	38	1	0	59	1.08
63810309--63810375	9	7.4	9	87	0	89	38	23	11	25	1.89
63810309--63810375	27	2.5	27	90	0	107	38	23	11	25	1.89
63810472--63810515	18	2.4	18	88	0	61	13	2	43	40	1.57
63814499--63814604	18	5.6	18	69	16	61	60	4	4	30	1.38
63814784--63814832	25	1.9	26	88	12	75	26	24	10	38	1.87
63819476--63819510	18	1.9	18	88	11	54	40	2	0	57	1.14
63820065--63820106	22	1.9	22	85	9	59	64	0	4	30	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63821645--63821682	14	2.7	14	87	0	58	47	7	0	44	1.32
63821641--63821777	67	2.0	67	83	5	168	39	8	2	49	1.46
63825213--63825253	9	4.6	9	82	11	57	78	9	0	12	0.98
63826095--63826123	8	3.6	8	100	0	58	79	0	10	10	0.94
63826094--63826130	16	2.3	16	85	0	56	78	0	10	10	0.97
63827321--63827672	45	7.9	45	73	8	236	28	22	23	25	1.99
63827358--63829003	88	18.7	88	91	1	2520	27	23	24	24	2.00
63827358--63829003	438	3.7	438	91	1	2530	27	23	24	24	2.00
63830763--63830809	24	2.0	24	84	12	62	29	8	6	55	1.55
63830806--63830842	14	2.6	14	86	0	56	45	8	0	45	1.32
63830804--63830935	65	2.0	67	85	2	178	39	9	2	49	1.47
63830992--63831039	17	2.8	17	77	0	51	39	8	0	52	1.32
63833145--63833257	54	2.1	55	93	3	194	43	13	19	23	1.86
63834163--63834199	18	2.1	18	100	0	74	51	16	5	27	1.66
63837818--63837857	18	2.2	18	86	8	55	60	5	0	35	1.19
63838147--63838196	26	1.9	26	84	8	66	28	24	8	40	1.83
63843718--63843750	14	2.4	14	94	0	57	66	9	0	24	1.20
63844760--63844901	51	2.7	52	91	6	214	43	12	22	21	1.86
63846002--63846155	46	3.3	46	89	4	220	43	19	14	22	1.87
63849904--63850013	42	2.6	42	86	4	150	31	26	16	25	1.96
63849904--63850060	43	3.7	42	83	7	156	32	27	15	24	1.96
63849947--63850068	44	2.8	43	83	3	138	33	27	15	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63851293--63851318	13	2.0	13	100	0	52	46	0	23	30	1.53
63855782--63855815	17	2.0	17	88	11	52	55	0	17	26	1.42
63859922--63859951	15	2.0	15	93	0	51	46	13	3	36	1.60
63860874--63860898	5	5.0	5	100	0	50	80	0	0	20	0.72
63861133--63861191	22	3.0	20	80	16	61	67	0	3	28	1.06
63861148--63861198	9	5.7	10	86	11	51	68	0	1	29	1.00
63861161--63861197	3	12.7	3	88	5	58	67	0	2	29	1.04
63861229--63861319	4	22.8	4	70	14	55	70	0	5	24	1.08
63869617--63869648	9	3.6	9	91	0	55	40	21	12	25	1.88
63869746--63869801	29	2.0	28	82	10	69	14	1	42	41	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216