genome.fa.s15.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  198  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61435271--61435306	17	2.1	17	100	0	72	11	11	0	77	0.99
61435284--61435324	22	1.9	22	95	5	75	12	12	0	75	1.05
61436130--61436206	24	3.2	24	75	12	70	10	10	6	72	1.27
61436127--61436242	59	2.0	59	86	6	164	8	12	6	72	1.28
61440248--61440551	109	2.8	110	89	4	440	33	20	16	28	1.95
61443059--61443103	21	2.1	22	84	12	58	13	8	8	68	1.38
61448003--61448114	24	4.7	24	89	2	154	20	28	17	33	1.96
61463876--61463930	10	5.5	10	77	14	51	23	0	3	72	1.00
61463874--61463936	20	3.0	21	90	6	94	23	0	6	69	1.11
61463874--61463936	21	3.0	20	84	11	74	23	0	6	69	1.11
61484132--61484166	14	2.6	14	90	4	54	80	0	20	0	0.72
61484132--61484167	18	2.1	18	89	5	56	77	0	22	0	0.76
61487960--61487995	19	1.9	18	88	5	54	22	8	2	66	1.31
61488010--61488063	22	2.4	23	79	14	67	20	9	7	62	1.48
61489182--61489223	19	2.2	19	86	0	57	38	9	30	21	1.85
61489189--61489226	19	2.0	19	94	0	67	39	5	34	21	1.76
61491653--61491725	31	2.3	30	81	9	85	24	9	10	54	1.65
61498223--61498254	10	3.4	10	87	12	50	18	0	0	81	0.70
61499288--61499324	15	2.6	14	91	4	56	18	0	16	64	1.29
61502241--61502298	3	19.7	3	82	3	73	36	1	0	62	1.06
61503604--61503637	16	2.1	16	88	0	50	20	14	20	44	1.87
61513370--61513401	17	1.9	16	93	6	55	53	12	6	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61513533--61513858	132	2.5	132	88	1	465	28	19	25	26	1.99
61514611--61514665	18	3.2	17	82	14	60	18	5	0	76	0.97
61514634--61514667	10	3.5	10	96	4	61	14	0	0	85	0.60
61514611--61514666	17	3.2	18	80	16	64	17	5	0	76	0.96
61515486--61515524	3	13.0	3	83	0	51	38	2	0	58	1.12
61521316--61521415	41	2.5	42	87	8	136	24	25	14	37	1.92
61522682--61522813	51	2.6	51	82	2	167	23	16	28	31	1.96
61522817--61522909	45	2.1	45	91	0	150	25	20	23	30	1.99
61523181--61523233	26	2.0	26	100	0	106	47	11	11	30	1.74
61526554--61526579	13	2.0	13	100	0	52	53	0	15	30	1.42
61527454--61527578	59	2.1	59	87	0	178	38	22	12	26	1.90
61530683--61530733	26	2.0	26	96	0	93	11	23	35	29	1.90
61530604--61530869	104	2.6	103	89	3	410	19	19	30	30	1.96
61537942--61537989	13	3.6	13	77	5	51	68	0	31	0	0.90
61538284--61538718	104	4.2	105	83	8	509	29	0	16	53	1.49
61538320--61538718	210	1.9	206	83	8	520	29	1	16	53	1.50
61539795--61539896	50	2.0	50	94	0	177	26	20	22	30	1.98
61540769--61540844	33	2.3	33	83	0	89	15	42	14	27	1.86
61541008--61541199	76	2.6	73	84	6	237	30	5	10	53	1.59
61544127--61544181	19	3.0	19	73	5	51	60	16	0	23	1.36
61547398--61547607	106	2.0	106	88	3	316	29	16	15	39	1.89
61551454--61551513	30	2.0	30	84	12	79	46	21	8	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61551613--61551661	10	5.4	9	77	22	50	24	0	8	67	1.18
61551612--61551680	18	3.8	18	75	17	63	27	0	8	63	1.23
61551612--61551692	26	3.0	26	79	16	78	28	0	8	62	1.24
61554542--61554649	11	10.5	11	62	20	54	53	4	0	40	1.28
61554545--61554649	15	6.9	15	64	26	51	54	4	0	40	1.28
61554545--61554649	31	3.4	31	79	7	124	54	4	0	40	1.28
61554538--61554663	61	2.1	61	96	0	234	50	6	0	42	1.33
61556080--61556109	12	2.5	12	94	0	51	60	0	3	36	1.14
61556996--61557266	136	2.0	136	97	0	515	23	21	13	42	1.87
61557463--61557580	61	1.9	61	100	0	236	27	20	5	45	1.74
61558444--61558497	25	2.2	25	82	0	63	29	16	18	35	1.93
61562674--61562716	3	14.3	3	100	0	86	32	0	0	67	0.91
61563061--61563097	19	1.9	18	89	10	56	10	13	0	75	1.04
61566370--61566394	5	5.0	5	100	0	50	0	60	20	20	1.37
61572508--61572542	16	2.2	16	89	0	52	22	17	17	42	1.88
61575694--61575732	15	2.6	16	88	8	55	69	0	17	12	1.19
61577296--61577791	252	2.0	252	89	2	773	29	20	25	24	1.99
61577771--61578262	50	9.8	50	73	0	356	31	20	21	25	1.98
61577777--61578288	100	5.1	100	86	0	655	32	20	21	26	1.97
61578580--61578681	44	2.3	44	83	6	118	28	24	24	22	1.99
61579968--61580060	3	31.3	3	72	10	57	36	3	2	58	1.27
61581303--61581349	25	1.9	24	91	4	76	59	0	2	38	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61583403--61583448	16	2.9	16	81	9	51	63	0	4	32	1.14
61603465--61603519	24	2.2	26	81	12	71	23	9	9	58	1.58
61605654--61605703	25	2.0	24	84	3	64	38	2	0	60	1.09
61605928--61606046	60	2.0	60	91	0	193	32	0	11	54	1.43
61613125--61613168	15	2.9	15	86	0	61	4	72	6	15	1.22
61619904--61619946	24	1.9	24	81	13	56	32	13	4	48	1.63
61622279--61622346	27	2.5	27	82	2	82	38	2	0	58	1.13
61624128--61624229	49	2.1	50	96	1	188	30	15	13	40	1.86
61628939--61629073	37	3.5	39	75	8	141	34	24	15	25	1.95
61629942--61629986	23	2.0	23	81	0	54	0	26	2	71	0.98
61634676--61634700	13	1.9	13	100	0	50	24	0	0	76	0.80
61636616--61636650	3	11.7	3	100	0	70	65	0	0	34	0.93
61646776--61646800	5	5.0	5	100	0	50	40	20	20	20	1.92
61651039--61651104	24	2.8	23	84	4	87	25	21	18	34	1.96
61651031--61651100	24	3.0	22	80	12	77	27	22	17	32	1.96
61651602--61651658	28	2.0	28	100	0	114	21	28	10	40	1.86
61656128--61656156	13	2.1	14	93	6	51	0	20	0	79	0.74
61657962--61658007	21	2.2	20	88	3	65	65	4	2	28	1.23
61669194--61669232	20	1.9	21	85	15	55	46	12	15	25	1.81
61683699--61683759	27	2.3	26	83	5	86	18	21	21	39	1.93
61683835--61683896	24	2.6	24	77	10	72	17	24	20	37	1.94
61683947--61683971	12	2.1	12	100	0	50	28	16	40	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61684752--61684798	23	2.0	23	100	0	94	12	12	25	48	1.77
61685147--61685238	42	2.2	42	98	0	175	18	32	31	17	1.94
61689599--61689668	28	2.4	29	80	2	79	20	37	21	21	1.95
61698578--61698663	43	2.0	43	100	0	172	44	20	11	23	1.84
61702599--61702639	21	2.0	21	90	0	64	19	29	21	29	1.98
61710475--61710549	19	3.9	19	75	5	71	42	1	0	56	1.08
61710475--61710538	23	2.7	25	69	11	62	40	1	0	57	1.08
61711380--61711406	1	27.0	1	100	0	54	0	0	0	100	0.00
61716089--61716224	69	2.0	67	88	5	202	37	1	7	53	1.38
61719087--61719283	35	5.6	35	77	7	166	18	10	28	41	1.84
61719087--61719247	70	2.3	70	82	6	193	20	10	28	40	1.86
61722384--61722500	58	2.0	58	100	0	234	18	23	11	45	1.83
61730267--61730298	6	4.9	7	85	14	50	75	0	12	12	1.06
61730267--61730298	13	2.4	14	85	15	50	75	0	12	12	1.06
61732090--61732126	18	2.0	19	85	15	51	45	2	5	45	1.40
61735697--61735874	45	4.0	45	81	2	171	33	23	15	27	1.95
61735714--61735880	90	1.9	90	83	7	223	33	24	14	26	1.95
61735714--61735895	45	4.0	45	79	4	127	32	25	14	26	1.95
61736258--61736440	50	3.7	50	82	7	162	20	31	20	27	1.98
61736305--61736440	50	2.7	49	87	5	193	18	33	21	27	1.96
61736314--61736468	50	3.1	47	74	17	120	19	34	20	25	1.96
61738775--61738832	30	1.9	30	89	0	89	41	3	24	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61739044--61739075	13	2.5	13	94	0	55	31	0	12	56	1.37
61739170--61739411	50	4.7	50	85	6	290	26	23	29	20	1.99
61739170--61739419	100	2.4	103	87	6	355	26	23	29	21	1.99
61743125--61743373	50	4.8	50	85	4	284	20	29	24	26	1.99
61743124--61743373	100	2.4	104	88	6	357	20	29	24	26	1.99
61743468--61743499	13	2.5	13	94	0	55	56	12	0	31	1.37
61743711--61743768	30	1.9	30	89	0	89	31	24	3	41	1.71
61748443--61748500	30	1.9	30	89	0	89	41	3	24	31	1.71
61748712--61748743	13	2.5	13	94	0	55	31	0	12	56	1.37
61748838--61749078	50	4.7	50	86	5	297	26	24	29	19	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216