genome.fa.s15.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  187  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58363084--58363117	16	2.1	16	100	0	68	35	5	26	32	1.81
58385472--58385660	59	3.2	58	71	11	184	41	1	3	53	1.26
58385606--58385718	26	4.2	26	66	12	84	42	1	2	53	1.25
58385664--58385698	18	2.0	17	88	5	52	40	2	2	54	1.30
58390367--58390424	30	1.9	30	85	0	80	22	37	25	13	1.91
58394481--58394668	59	3.2	59	66	11	150	41	3	3	51	1.35
58394470--58394755	119	2.4	119	94	1	475	43	2	3	50	1.33
58394590--58394645	15	3.5	18	75	24	63	42	0	0	57	0.99
58394544--58394726	56	3.1	58	67	23	146	42	2	5	50	1.37
58394710--58394744	18	2.0	17	88	5	52	45	0	0	54	0.99
58394458--58394775	119	2.7	118	88	4	385	43	2	4	50	1.34
58394698--58394969	144	1.9	147	93	3	478	47	2	3	46	1.35
58394854--58394888	18	2.0	17	88	5	52	45	0	0	54	0.99
58395050--58395144	45	2.1	44	83	9	113	33	24	6	35	1.81
58395125--58395192	16	4.2	16	94	0	109	36	35	0	27	1.58
58395825--58395863	12	3.2	12	85	0	51	53	10	0	35	1.35
58396736--58396763	4	7.0	4	100	0	56	50	0	0	50	1.00
58399570--58399608	18	2.2	17	86	13	53	33	0	20	46	1.51
58399833--58399885	23	2.3	23	90	0	88	22	20	24	32	1.98
58401895--58402207	67	4.8	67	84	7	430	37	1	18	42	1.62
58402401--58402492	45	2.0	45	81	4	105	25	25	14	35	1.93
58402662--58402719	20	2.9	20	84	0	71	34	5	17	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58402661--58402732	20	3.6	20	77	5	65	34	5	18	41	1.73
58413958--58414026	30	2.3	31	82	7	79	21	8	20	49	1.76
58415625--58415667	18	2.4	18	88	0	59	41	44	2	11	1.53
58415763--58415811	9	5.4	9	81	13	57	30	10	18	40	1.84
58420650--58420813	23	7.2	22	72	7	96	40	35	5	18	1.74
58420722--58420787	25	2.8	23	77	8	69	46	27	4	21	1.70
58422534--58422737	102	2.0	102	92	1	340	36	13	18	31	1.89
58423423--58423508	40	2.2	40	81	12	97	69	5	4	19	1.27
58436808--58436913	41	2.6	41	92	0	176	22	21	25	30	1.99
58440850--58440909	27	2.2	28	85	8	79	60	0	0	40	0.97
58440915--58440948	9	3.4	10	88	12	52	79	0	0	20	0.73
58442149--58442329	63	2.9	62	78	9	172	26	27	22	24	2.00
58443739--58443810	28	2.5	30	82	15	89	25	5	1	68	1.20
58447922--58447961	16	2.5	16	92	8	64	27	27	7	37	1.84
58448559--58448598	21	1.9	21	85	10	55	35	30	5	30	1.79
58455047--58455106	26	2.3	26	85	0	75	30	10	16	43	1.81
58457810--58457834	13	1.9	13	100	0	50	52	0	0	48	1.00
58458408--58458436	13	2.3	13	94	5	51	13	10	6	68	1.37
58460272--58460367	27	3.6	27	82	0	93	26	26	22	25	2.00
58463647--58463765	60	2.0	60	93	0	202	53	12	0	32	1.44
58463659--58463777	60	2.0	60	91	0	193	55	10	1	32	1.43
58463925--58463954	3	10.3	3	92	7	53	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58464215--58464279	24	2.8	23	73	13	69	58	1	0	40	1.07
58468355--58468538	98	1.9	98	84	5	239	45	4	5	44	1.46
58468634--58468709	32	2.3	32	84	6	89	40	9	3	46	1.54
58472903--58472940	20	1.9	19	89	5	58	23	21	13	42	1.88
58474647--58474702	29	1.9	29	85	0	76	67	10	12	8	1.41
58474642--58474708	29	2.5	26	77	13	71	68	10	10	10	1.39
58474712--58474737	5	5.2	5	100	0	52	76	0	23	0	0.78
58475606--58475652	6	7.0	7	79	16	55	68	0	19	12	1.21
58475601--58475652	19	2.7	19	79	5	61	69	0	19	11	1.18
58475611--58475649	13	3.1	13	92	3	62	69	0	17	12	1.19
58477158--58477527	44	8.0	44	67	17	160	32	19	20	27	1.97
58477013--58477584	142	4.0	142	91	1	896	33	19	19	27	1.96
58477199--58477380	98	1.9	98	82	2	231	32	19	18	29	1.96
58477660--58477841	50	3.6	49	71	10	116	36	21	15	25	1.93
58479248--58479285	12	3.2	12	88	0	58	34	2	0	63	1.09
58479226--58479316	43	2.1	42	84	9	114	35	4	1	59	1.25
58482575--58482641	31	2.2	31	83	0	80	22	31	22	23	1.98
58482497--58482782	107	2.7	104	75	7	227	24	25	20	29	1.99
58485876--58485924	21	2.4	21	93	3	82	14	12	14	59	1.62
58486291--58486358	29	2.4	28	85	2	82	48	17	4	29	1.67
58486416--58486500	33	2.7	30	80	14	91	47	14	3	35	1.61
58486992--58487031	19	2.0	20	90	4	64	60	2	5	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58499906--58499945	16	2.5	16	91	0	62	47	2	7	42	1.45
58499934--58500079	75	2.1	68	87	11	206	40	4	8	45	1.56
58500015--58500053	16	2.4	16	91	0	60	35	0	7	56	1.28
58500290--58500374	20	4.3	20	80	12	88	65	8	4	21	1.38
58500411--58500451	20	2.0	20	90	0	64	65	4	7	21	1.37
58500522--58500554	16	2.1	16	100	0	66	69	12	0	18	1.18
58500778--58500838	27	2.3	27	91	5	97	21	13	32	32	1.91
58509936--58509971	13	2.8	13	95	0	63	16	5	11	66	1.40
58510398--58510457	31	2.0	30	83	9	77	16	15	13	55	1.70
58510697--58510722	11	2.4	11	100	0	52	76	7	0	15	0.99
58516794--58516852	29	2.0	29	100	0	118	32	20	16	30	1.95
58517430--58517568	57	2.4	57	83	3	163	38	15	27	17	1.91
58517735--58517793	29	2.0	29	83	6	75	33	13	32	20	1.91
58530846--58530881	6	5.8	6	90	3	54	55	0	27	16	1.42
58530845--58530883	12	3.2	12	88	3	60	58	0	25	15	1.37
58538675--58538714	16	2.5	16	95	0	71	50	0	20	30	1.49
58538675--58538720	16	2.9	16	90	3	58	54	0	19	26	1.44
58539220--58539268	20	2.7	18	77	22	57	51	4	2	42	1.32
58540763--58540863	45	2.2	45	85	3	150	42	18	16	21	1.89
58545780--58545848	16	4.2	16	94	3	120	39	37	0	23	1.55
58545780--58545848	33	2.1	32	94	2	120	39	37	0	23	1.55
58546090--58546146	30	1.9	30	86	10	82	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58548035--58548153	27	4.4	26	75	12	80	19	29	15	35	1.93
58549529--58549622	47	2.0	47	100	0	188	53	8	4	34	1.51
58554463--58554673	105	2.0	105	95	0	377	35	22	10	31	1.89
58556482--58556529	21	2.3	21	77	0	51	37	6	2	54	1.38
58561646--58561748	25	4.2	24	79	12	93	28	18	23	30	1.98
58561663--58561748	25	3.5	25	84	6	95	29	17	23	30	1.97
58561690--58561769	25	3.2	25	85	7	92	30	18	26	25	1.98
58568420--58568457	17	2.2	18	90	4	60	39	0	5	55	1.23
58575851--58576449	301	2.0	301	100	0	1198	38	15	18	28	1.90
58576436--58576477	21	2.0	21	100	0	84	47	14	4	33	1.65
58588497--58588534	17	2.4	17	91	8	62	55	0	13	31	1.38
58591068--58591093	13	2.0	13	100	0	52	38	7	0	53	1.30
58596208--58596241	14	2.4	14	90	0	50	38	2	0	58	1.13
58596218--58596247	14	2.1	14	93	0	51	43	6	0	50	1.28
58598487--58598537	21	2.5	19	79	14	57	27	1	7	62	1.33
58598817--58598847	16	1.9	16	93	0	53	48	9	6	35	1.62
58598964--58599005	9	4.4	9	82	17	50	30	2	0	66	1.04
58598975--58599098	20	6.6	18	73	7	61	38	0	4	55	1.27
58599017--58599088	20	3.7	20	81	7	76	37	1	8	52	1.40
58602895--58602941	10	4.7	10	82	10	51	27	25	0	46	1.53
58603706--58603741	6	6.0	6	90	0	54	38	0	44	16	1.48
58603706--58603741	12	3.0	12	95	0	63	38	0	44	16	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58603706--58603740	18	1.9	18	94	0	61	40	0	42	17	1.49
58608032--58608165	67	2.0	67	91	0	214	32	9	23	33	1.88
58609513--58609555	21	2.0	22	86	13	63	44	0	13	41	1.44
58609513--58609556	20	2.1	21	84	12	56	45	0	13	40	1.44
58609625--58609778	64	2.4	64	90	3	229	33	8	16	42	1.78
58609921--58610027	41	2.6	41	89	0	169	22	17	23	36	1.95
58612134--58612181	19	2.5	19	86	6	62	50	0	25	25	1.50
58611612--58612793	599	2.0	598	99	0	2328	30	11	22	35	1.89
58612733--58612780	19	2.5	19	86	6	62	50	0	25	25	1.50
58619193--58619250	31	1.9	31	89	3	91	13	22	32	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216