genome.fa.s15.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  199  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61748838--61749086	100	2.4	103	87	7	355	26	23	29	20	1.99
61753641--61753734	27	3.3	26	71	21	64	43	1	2	53	1.19
61764015--61764046	16	2.0	16	93	0	55	15	3	0	81	0.82
61769909--61769975	24	2.9	22	77	18	64	62	2	2	31	1.25
61783721--61783772	20	2.3	23	87	12	74	36	0	1	61	1.07
61788485--61788530	14	3.2	14	78	21	51	54	6	2	36	1.39
61789926--61789973	23	2.2	23	78	10	57	35	2	0	62	1.07
61804195--61804234	9	4.4	9	90	0	53	42	25	7	25	1.80
61807838--61807900	26	2.4	26	89	5	92	36	14	6	42	1.71
61828777--61829364	46	13.6	45	73	13	398	29	19	23	26	1.98
61828990--61829273	87	3.3	87	74	8	335	29	20	22	27	1.98
61828774--61829365	173	3.4	174	96	2	1056	29	19	23	26	1.98
61829163--61829450	129	2.2	129	87	6	415	29	18	23	28	1.98
61828904--61829450	43	12.7	42	71	13	292	29	19	23	27	1.98
61833444--61833478	18	1.9	18	88	11	54	34	17	5	42	1.73
61833792--61833981	43	4.4	43	73	6	143	41	17	16	23	1.90
61834739--61834909	89	1.9	89	95	0	306	46	18	12	22	1.83
61838382--61838432	26	1.9	27	84	4	68	41	19	1	37	1.63
61843630--61843786	72	2.1	75	81	9	180	38	5	15	41	1.69
61844213--61844334	41	3.0	41	93	4	219	29	18	27	23	1.98
61845698--61845890	50	3.9	50	86	0	233	21	29	21	27	1.99
61849246--61849276	2	15.5	2	100	0	62	51	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61851268--61851336	36	1.9	36	100	0	138	31	8	27	31	1.87
61851329--61851358	15	2.1	15	93	6	53	0	6	10	83	0.81
61855406--61855457	25	2.0	27	82	14	65	48	5	1	44	1.38
61855650--61855674	13	1.9	13	100	0	50	64	0	4	32	1.12
61856654--61856694	14	2.9	15	85	7	50	31	17	0	51	1.46
61863652--61863746	48	2.0	48	91	0	154	32	4	38	24	1.74
61871586--61871700	45	2.6	43	89	4	176	10	13	10	65	1.48
61871586--61871701	43	2.7	43	86	4	169	11	13	10	64	1.49
61872229--61872324	31	3.1	31	95	3	174	45	13	9	31	1.75
61873046--61873095	25	2.0	25	100	0	100	24	24	16	36	1.94
61876037--61876074	3	12.7	3	100	0	76	31	0	0	68	0.90
61876798--61876848	20	2.5	21	78	15	61	31	3	1	62	1.24
61882795--61882819	3	8.3	3	100	0	50	68	0	0	32	0.90
61897275--61897309	10	3.5	10	96	0	61	51	5	2	40	1.40
61902740--61902807	5	13.8	5	98	1	129	41	0	0	58	0.98
61902807--61902857	24	2.1	25	85	3	68	74	3	15	5	1.16
61903775--61903913	40	3.5	39	77	7	138	26	17	23	32	1.97
61905641--61905884	46	5.6	45	81	14	287	29	22	13	34	1.92
61905779--61905848	36	1.9	36	91	0	113	30	17	12	40	1.87
61905733--61905884	82	1.9	82	95	0	277	30	20	11	37	1.88
61911742--61911795	27	2.0	27	88	0	81	33	0	1	64	1.04
61914296--61914369	37	2.0	37	100	0	148	32	27	2	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61924601--61924637	19	2.0	18	89	5	56	29	5	2	62	1.31
61938182--61938354	53	3.3	51	81	10	197	45	15	12	26	1.82
61940286--61940356	30	2.3	31	75	9	72	43	5	2	47	1.41
61943423--61943510	27	3.2	26	74	18	70	35	1	6	56	1.33
61943459--61943501	20	2.1	21	91	4	70	39	0	4	55	1.20
61952556--61952598	22	1.9	23	90	4	70	58	11	6	23	1.57
61963267--61963325	9	5.9	10	79	16	52	27	3	5	64	1.30
61975933--61976222	87	3.4	85	71	12	240	31	20	21	27	1.97
61975887--61976264	173	2.2	171	87	5	532	30	20	21	27	1.98
61977861--61977919	9	5.9	10	79	16	52	27	3	5	64	1.30
61979517--61979571	27	2.0	27	82	10	67	38	3	9	49	1.52
61989838--61989982	65	2.2	65	80	9	161	56	2	3	37	1.28
61989866--61989958	9	10.1	9	72	13	73	59	2	3	35	1.26
61989906--61989974	18	3.7	18	71	17	52	53	0	5	40	1.25
61989905--61989990	35	2.4	38	81	11	92	56	0	5	37	1.23
61990562--61990674	48	2.3	47	81	10	129	30	0	3	65	1.15
61990561--61990682	49	2.5	50	79	11	144	30	0	4	64	1.17
61993421--61993471	19	2.7	19	96	0	93	13	29	39	17	1.88
61994444--61994551	40	2.7	40	85	2	137	30	12	22	34	1.92
61996317--61996377	30	2.0	31	90	3	97	36	0	44	19	1.51
62000067--62000099	16	2.1	16	100	0	66	45	36	12	6	1.66
62007812--62007844	15	2.2	15	94	0	57	9	18	0	72	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62013537--62013621	17	4.9	17	70	17	50	74	4	10	10	1.21
62013547--62013641	50	1.9	50	81	12	117	73	4	12	9	1.22
62015734--62015874	43	3.3	43	86	5	194	31	23	20	24	1.98
62015939--62016306	50	7.3	50	73	7	273	32	22	19	25	1.97
62015937--62016306	100	3.7	98	88	4	494	32	23	18	25	1.97
62015937--62016306	200	1.8	201	87	7	556	32	23	18	25	1.97
62022396--62022420	6	4.2	6	100	0	50	84	0	16	0	0.63
62025327--62025388	30	2.0	31	90	9	101	48	0	1	50	1.10
62025332--62025393	9	7.6	9	82	14	73	48	0	1	50	1.10
62025685--62025731	24	2.0	24	84	16	62	31	0	17	51	1.46
62035162--62035335	37	4.8	37	94	1	280	38	13	21	26	1.91
62035298--62035421	46	2.8	46	91	3	200	33	16	22	27	1.96
62042847--62043020	37	4.8	37	94	1	280	38	13	21	26	1.91
62042983--62043106	46	2.8	46	91	3	200	33	16	22	27	1.96
62045095--62045717	88	7.0	88	83	5	732	28	18	23	29	1.97
62045160--62045383	44	5.1	43	66	12	123	26	19	25	28	1.99
62045175--62045716	186	3.0	186	85	4	637	29	17	23	29	1.97
62048005--62048059	23	2.4	23	87	6	76	30	7	20	41	1.79
62050282--62050348	3	22.3	3	80	17	77	31	4	1	62	1.24
62050290--62050351	8	7.5	8	79	16	65	32	3	1	62	1.20
62050248--62050370	50	2.5	48	78	12	135	29	6	0	63	1.25
62073470--62073535	25	2.7	24	83	6	80	13	25	24	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62073456--62073543	25	3.6	24	74	10	79	14	23	25	36	1.93
62073528--62073625	50	2.0	50	80	8	110	17	21	23	37	1.94
62073678--62073753	25	3.0	25	80	16	93	21	27	21	30	1.98
62075924--62076025	26	4.2	24	75	10	91	35	20	24	19	1.96
62075942--62076032	26	3.6	26	81	7	100	36	20	25	17	1.94
62085542--62085591	25	1.9	25	88	8	73	40	8	2	50	1.43
62088810--62088850	17	2.4	17	87	0	55	46	9	17	26	1.79
62088819--62088852	17	2.0	17	94	0	59	41	8	23	26	1.83
62089064--62089098	14	2.4	15	90	4	54	42	37	8	11	1.72
62101395--62101589	104	1.9	104	89	2	302	28	16	8	46	1.77
62102358--62102849	227	2.2	227	85	2	659	33	17	19	29	1.95
62102757--62102935	44	4.0	44	72	9	139	31	16	21	30	1.95
62102466--62103070	271	2.2	271	81	7	762	33	17	20	28	1.95
62107724--62107748	10	2.5	10	100	0	50	8	60	20	12	1.57
62111814--62111866	19	2.5	21	82	14	65	49	0	3	47	1.19
62112204--62112264	10	6.3	9	78	17	61	60	0	3	36	1.13
62113258--62113301	22	2.0	21	82	4	52	40	11	0	47	1.39
62126361--62126492	66	2.0	66	100	0	264	39	12	10	37	1.77
62128157--62128201	23	2.0	23	82	8	56	44	6	0	48	1.29
62128413--62128597	92	2.0	92	88	6	277	44	3	3	48	1.37
62128767--62128808	15	2.7	16	82	14	52	45	0	2	52	1.13
62128758--62128799	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62131463--62131498	16	2.2	16	90	0	54	41	30	0	27	1.56
62143054--62143204	25	6.1	25	80	6	132	33	21	25	19	1.97
62143168--62143265	25	3.9	25	72	18	71	33	19	26	20	1.96
62143349--62143396	25	1.9	25	86	0	69	33	14	27	25	1.94
62146488--62146516	11	2.7	11	94	5	51	0	6	0	93	0.36
62148146--62148193	22	2.2	22	82	10	64	58	0	2	39	1.10
62148157--62148204	22	2.3	21	82	7	62	54	0	2	43	1.12
62153382--62153425	18	2.4	19	84	3	54	27	2	2	68	1.14
62161298--62161344	22	2.2	21	81	11	51	55	2	0	42	1.12
62163493--62163521	13	2.3	13	94	5	51	31	10	0	58	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216