genome.fa.s15.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  215  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66941476--66941518	21	2.0	21	82	8	52	23	20	4	51	1.66
66942561--66942653	39	2.5	37	80	7	98	27	29	22	20	1.98
66943009--66943056	3	16.0	3	82	0	60	58	6	0	35	1.23
66943010--66943058	18	2.7	18	93	0	80	55	8	0	36	1.30
66943009--66943056	12	4.0	12	91	0	69	58	6	0	35	1.23
66944092--66944134	21	2.0	21	81	0	50	58	6	0	34	1.25
66950702--66951574	435	2.0	435	100	0	1746	36	11	13	38	1.81
66958962--66959092	61	2.2	61	84	1	165	41	12	5	41	1.65
66964131--66964157	14	1.9	14	100	0	54	37	0	7	55	1.28
66965264--66965300	5	7.2	5	90	3	56	2	54	40	2	1.29
66965822--66965888	31	2.2	31	86	0	89	28	16	14	40	1.88
66967273--66967967	348	2.0	346	90	2	1110	36	14	12	35	1.85
66969595--66969632	19	2.0	19	100	0	76	52	0	5	42	1.24
66973641--66973671	12	2.6	12	100	0	62	9	61	22	6	1.50
66980399--66980448	22	2.4	21	75	24	52	50	0	0	50	1.00
66982752--66983061	158	2.0	157	91	4	502	35	23	17	23	1.95
66988241--66988743	264	1.9	263	90	1	792	33	19	12	35	1.89
66995810--66995834	4	6.2	4	100	0	50	76	0	0	24	0.80
66996650--66996723	32	2.3	32	86	4	96	55	8	6	29	1.55
67001456--67001497	20	2.0	21	86	4	59	33	0	0	66	0.92
67002520--67002892	187	2.0	190	88	2	565	21	11	23	43	1.85
67002747--67003056	158	2.0	158	88	1	469	22	11	21	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67009824--67009899	31	2.5	31	91	4	120	23	14	10	51	1.73
67011920--67012128	105	2.0	104	99	0	409	30	16	18	34	1.93
67015580--67015626	22	2.1	22	100	0	94	46	8	14	29	1.74
67016664--67016830	83	2.0	83	100	0	334	35	13	21	28	1.92
67018653--67018724	36	2.0	36	94	0	126	31	15	4	48	1.64
67019598--67019774	88	2.0	88	100	0	354	35	7	18	38	1.80
67022984--67023022	7	5.6	7	100	0	78	25	0	12	61	1.31
67025772--67025806	16	2.2	16	94	0	61	40	11	5	42	1.65
67032237--67032266	6	5.0	6	100	0	60	16	0	0	83	0.65
67032231--67032266	18	1.9	18	88	5	54	16	0	5	77	0.94
67032286--67032340	28	2.0	27	82	13	67	58	0	0	41	0.98
67035425--67035496	31	2.4	30	81	4	81	47	13	5	33	1.67
67042952--67043020	31	2.2	31	76	0	75	42	4	15	37	1.68
67046124--67046215	46	2.0	46	100	0	184	41	21	6	30	1.78
67047304--67047454	75	2.0	75	100	0	302	47	7	10	34	1.67
67066096--67066138	19	2.3	19	84	8	52	67	4	2	25	1.22
67069396--67069429	16	2.1	16	94	0	59	23	5	23	47	1.73
67075232--67075356	60	2.1	60	92	1	207	36	7	15	40	1.74
67079684--67079729	23	2.0	23	86	0	65	56	2	2	39	1.24
67086609--67086714	47	2.2	48	96	3	196	17	18	16	46	1.85
67090566--67090599	12	2.8	12	86	0	50	52	0	8	38	1.33
67092572--67092638	31	2.3	28	80	14	73	55	4	2	37	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67107213--67107390	96	1.9	96	100	0	356	38	10	12	38	1.79
67107658--67107796	70	2.0	69	85	1	188	42	20	13	23	1.88
67113243--67113292	22	2.3	23	79	10	59	58	2	2	38	1.21
67114597--67114657	29	2.0	29	87	9	86	50	1	1	45	1.21
67120414--67120480	30	2.2	30	84	5	82	52	8	14	23	1.70
67120641--67120686	22	2.0	23	83	4	58	26	4	10	58	1.50
67122137--67122196	31	1.9	31	93	0	102	46	6	11	35	1.67
67128482--67128587	4	26.5	4	96	0	104	16	11	25	46	1.81
67132680--67132723	15	3.1	15	87	9	58	25	45	0	29	1.54
67134312--67134342	5	6.2	5	100	0	62	41	58	0	0	0.98
67138074--67138121	24	2.0	24	100	0	96	41	8	25	25	1.83
67144438--67144500	30	2.1	31	85	8	85	31	3	3	61	1.27
67144441--67144497	23	2.4	23	75	11	62	24	3	3	68	1.21
67146708--67146738	14	2.2	14	94	0	53	19	6	12	61	1.53
67146954--67146985	11	2.8	12	86	13	50	65	0	0	34	0.93
67148006--67148034	7	4.1	7	100	0	58	31	13	0	55	1.39
67148385--67148429	22	2.0	22	82	4	54	51	8	2	37	1.46
67150168--67150214	6	7.8	6	100	0	94	51	17	0	31	1.46
67165985--67166021	14	2.6	15	83	12	51	45	2	5	45	1.40
67172576--67172606	4	7.8	4	92	0	53	22	3	25	48	1.66
67175165--67175200	19	1.9	18	88	5	54	58	2	0	38	1.13
67175165--67175205	19	2.3	18	84	12	50	60	2	0	36	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67183580--67183649	31	2.3	31	82	0	77	62	4	1	31	1.23
67183611--67183658	23	2.1	23	84	7	62	58	2	4	35	1.29
67198690--67198723	17	2.0	17	94	0	59	44	50	0	5	1.26
67203319--67203352	17	2.0	17	94	0	59	44	50	0	5	1.26
67211076--67211140	34	1.9	34	100	0	130	63	4	4	27	1.34
67220004--67220028	8	3.1	8	100	0	50	48	0	0	52	1.00
67243015--67243134	33	3.7	32	79	2	123	50	8	35	5	1.54
67243015--67243154	66	2.1	66	81	7	160	52	9	32	5	1.55
67243015--67243154	33	4.2	33	76	1	93	52	9	32	5	1.55
67248431--67248480	18	2.8	18	78	0	55	16	34	26	24	1.95
67258636--67258672	17	2.1	18	85	14	51	56	0	2	40	1.13
67260483--67260781	151	2.0	148	98	1	571	24	21	21	33	1.97
67262757--67262820	31	2.1	31	96	0	119	42	10	6	40	1.65
67262914--67262952	19	2.1	19	100	0	78	48	5	5	41	1.47
67268543--67268603	25	2.4	27	76	15	67	45	0	6	47	1.28
67271661--67271707	21	2.2	22	92	3	78	21	19	38	21	1.94
67278073--67278168	31	3.1	30	71	14	88	27	10	10	52	1.68
67278709--67278736	6	4.7	6	100	0	56	0	14	0	85	0.59
67278709--67278743	18	1.9	18	88	0	52	5	11	0	82	0.82
67285229--67285273	23	2.0	23	86	4	65	35	0	0	64	0.94
67300129--67300169	20	2.0	21	86	13	59	58	0	31	9	1.31
67304441--67304501	31	2.0	32	81	12	74	40	13	8	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67306551--67306620	21	3.3	21	67	15	63	14	17	18	50	1.79
67306563--67306700	21	6.7	21	65	9	70	13	20	18	47	1.83
67306529--67306700	42	4.1	42	77	10	165	13	21	18	46	1.83
67306529--67306700	84	2.1	82	81	6	195	13	21	18	46	1.83
67307294--67307384	40	2.3	40	81	7	96	26	20	24	28	1.99
67307460--67307566	40	2.7	39	85	2	133	25	19	24	30	1.98
67307738--67307793	14	4.0	14	75	9	51	25	0	28	46	1.53
67307818--67307848	14	2.1	15	94	5	55	12	0	45	41	1.42
67308605--67308648	22	1.9	24	86	9	65	56	9	11	22	1.62
67311520--67311557	5	8.0	5	88	11	62	57	0	0	42	0.98
67311520--67311557	19	2.0	19	90	10	60	57	0	0	42	0.98
67312484--67312535	24	2.2	24	89	0	77	55	9	1	32	1.43
67314644--67314707	33	1.9	33	100	0	128	43	10	17	28	1.82
67316602--67316635	17	2.0	17	94	0	59	44	50	0	5	1.26
67321240--67321273	17	2.0	17	94	0	59	44	50	0	5	1.26
67327762--67327854	18	5.2	18	89	0	141	32	13	23	30	1.94
67329355--67329383	5	5.8	5	100	0	58	37	0	0	62	0.96
67332891--67332932	19	2.2	19	83	8	50	50	2	9	38	1.48
67333427--67333490	33	1.9	33	100	0	128	43	10	17	28	1.82
67341332--67341403	30	2.5	26	79	18	72	52	9	0	37	1.34
67341386--67341422	14	2.5	15	80	20	51	62	0	0	37	0.96
67341345--67341403	27	2.1	30	84	9	79	50	8	0	40	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67341383--67341447	22	3.0	22	79	6	78	53	1	0	44	1.09
67344875--67344922	24	2.0	24	83	0	60	60	6	0	33	1.22
67355528--67355620	18	5.2	18	90	0	150	32	17	23	26	1.96
67355528--67355620	36	2.6	36	96	0	168	32	17	23	26	1.96
67360472--67360512	21	2.0	21	85	9	57	51	0	2	46	1.14
67362421--67362449	3	9.7	3	100	0	58	34	0	0	65	0.93
67377550--67377633	42	2.0	42	83	4	105	60	8	11	19	1.56
67389446--67389527	41	2.0	41	86	9	116	54	23	4	17	1.61
67390323--67390361	20	1.9	21	89	5	62	43	10	10	35	1.73
67393226--67393307	36	2.3	36	91	0	128	6	23	8	62	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216