genome.fa.s15.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  206  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63874243--63874308	32	2.0	33	85	2	89	39	15	7	37	1.75
63875180--63875240	22	2.7	22	73	16	63	22	27	0	49	1.50
63875180--63875240	10	5.6	10	76	16	59	22	27	0	49	1.50
63882403--63882449	23	2.0	24	83	8	60	27	21	10	40	1.86
63883172--63883402	46	5.0	46	91	0	363	28	25	9	35	1.88
63883172--63883402	92	2.5	92	94	0	408	28	25	9	35	1.88
63885199--63885259	18	3.4	18	86	0	77	18	24	9	47	1.78
63886522--63886553	9	3.6	9	95	0	55	40	21	12	25	1.88
63892596--63892638	21	2.0	21	86	8	61	34	0	6	58	1.25
63892916--63892946	16	1.9	16	93	0	53	22	32	6	38	1.80
63895550--63895618	30	2.3	30	82	0	75	26	13	7	53	1.65
63900923--63901028	30	3.5	30	96	0	185	31	14	25	29	1.94
63906369--63906417	6	8.2	6	93	0	80	44	0	34	20	1.52
63907112--63907142	15	2.1	15	100	0	62	25	22	19	32	1.97
63919046--63919161	31	3.9	29	70	21	96	44	12	18	25	1.83
63919270--63919306	16	2.2	17	95	4	67	70	0	0	29	0.88
63931107--63931164	30	1.9	30	89	0	89	56	1	6	34	1.36
63938565--63938608	23	1.9	23	95	0	79	11	11	13	63	1.52
63944507--63944583	9	7.8	9	72	18	55	33	2	2	61	1.24
63950167--63950440	42	6.5	42	89	0	379	48	9	15	26	1.75
63953958--63953998	21	2.0	21	90	0	64	14	56	4	24	1.58
63956483--63956589	29	3.5	31	73	14	98	28	14	13	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63957190--63957237	24	2.0	25	83	4	62	37	0	2	60	1.09
63957442--63957504	11	6.4	10	75	17	53	68	0	31	0	0.90
63957451--63957503	17	3.1	17	76	15	56	67	0	32	0	0.91
63957442--63957505	14	5.1	12	77	18	60	67	0	32	0	0.91
63958321--63958441	56	2.1	57	90	3	199	30	14	12	42	1.82
63958695--63958731	16	2.3	16	95	0	65	40	0	2	56	1.13
63961163--63961198	10	3.6	10	88	0	54	11	0	8	80	0.90
63962047--63962092	16	2.9	16	90	3	67	78	0	21	0	0.76
63962894--63962934	20	2.0	21	90	4	66	21	12	4	60	1.50
63962923--63963034	35	3.2	34	76	8	111	31	16	12	40	1.85
63962943--63963068	17	7.3	18	73	11	86	31	15	12	39	1.85
63962943--63963050	35	3.1	34	79	10	119	31	16	13	37	1.88
63962921--63963068	52	2.9	50	76	9	122	31	15	12	41	1.84
63963031--63963109	41	2.0	41	82	9	101	39	12	8	39	1.75
63962943--63963234	18	16.3	17	67	20	109	32	14	11	42	1.81
63963095--63963220	35	3.6	34	68	10	92	30	13	10	45	1.77
63963179--63963233	16	3.2	16	82	10	56	30	10	12	45	1.77
63963870--63963907	20	1.9	20	88	0	58	50	10	2	36	1.51
63964293--63964323	16	1.9	16	93	0	53	70	0	0	29	0.87
63969575--63969624	26	1.9	26	84	8	66	62	4	2	32	1.25
63972877--63972915	17	2.4	16	87	12	53	51	0	2	46	1.14
63974000--63974065	32	2.1	32	97	0	123	51	0	19	28	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63974051--63974091	21	2.0	20	85	4	55	73	0	9	17	1.09
63975551--63975595	17	2.7	16	80	10	54	75	4	2	17	1.07
63986644--63986711	31	2.2	30	80	10	75	39	10	7	42	1.67
63992018--63992077	30	2.0	30	83	0	75	50	5	0	45	1.23
63993277--63993327	11	4.7	11	75	2	50	17	7	11	62	1.51
63995468--63995503	16	2.3	15	90	4	54	33	2	5	58	1.36
63998843--63998886	22	2.0	22	82	8	54	75	6	0	18	1.02
64002473--64002525	21	2.5	21	87	0	70	30	32	7	30	1.85
64004762--64004807	22	2.1	22	100	0	92	34	13	8	43	1.74
64005638--64005688	3	17.0	3	82	8	59	1	33	0	64	1.05
64008804--64008829	11	2.4	11	100	0	52	30	0	46	23	1.53
64015136--64015279	75	1.9	74	92	1	243	34	18	19	28	1.95
64017330--64017909	100	5.8	100	84	1	633	25	19	20	33	1.97
64017315--64017909	50	11.9	50	70	5	324	26	19	21	33	1.97
64018188--64018245	24	2.4	24	82	0	71	29	22	10	37	1.87
64026250--64026352	30	3.4	29	72	19	95	26	3	47	22	1.68
64026240--64026358	60	2.0	60	93	0	202	24	5	46	24	1.72
64026339--64026400	24	2.6	24	89	0	97	29	4	43	22	1.74
64026401--64026440	18	2.2	18	86	0	53	25	0	50	25	1.50
64026409--64026449	9	4.6	9	96	0	73	24	0	46	29	1.53
64029707--64029741	3	11.7	3	100	0	70	68	0	0	31	0.90
64031273--64031655	195	2.0	195	86	2	545	36	23	13	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64032853--64032893	12	3.2	12	86	6	55	48	17	4	29	1.67
64036451--64036568	9	12.4	9	70	15	60	62	4	5	27	1.35
64039969--64040053	28	3.0	27	75	13	75	30	5	3	60	1.38
64040104--64040149	11	4.7	10	78	21	53	39	0	0	60	0.97
64040088--64040152	29	2.2	29	76	10	71	30	6	0	63	1.19
64040107--64040199	29	3.2	28	77	13	82	33	2	1	63	1.13
64040147--64040204	26	2.2	27	87	9	84	25	3	1	68	1.14
64040116--64040255	19	7.2	19	67	15	63	30	4	2	62	1.26
64040243--64040295	17	2.9	18	70	8	54	28	3	1	66	1.20
64040232--64040299	19	3.7	18	71	11	57	32	2	1	63	1.18
64040279--64040353	27	2.8	27	76	13	82	36	4	2	57	1.32
64040295--64040348	25	2.2	24	83	9	72	31	5	3	59	1.38
64042087--64042206	27	4.4	27	79	6	127	29	11	36	22	1.90
64042142--64042225	42	2.1	41	86	6	118	29	9	38	22	1.86
64042154--64042241	42	2.1	42	93	0	149	25	10	39	25	1.87
64042154--64042248	15	6.7	15	72	13	76	26	9	40	24	1.85
64042196--64042256	27	2.3	27	88	5	88	26	8	42	22	1.81
64045273--64045321	15	3.2	16	74	11	57	28	18	6	46	1.72
64045236--64045320	30	2.8	30	82	7	109	27	18	7	47	1.75
64049895--64049986	30	3.1	30	85	3	123	29	19	6	44	1.76
64049909--64049988	15	5.3	16	70	10	62	28	17	6	47	1.72
64050415--64050472	30	1.9	31	82	10	75	55	5	6	32	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64052194--64052274	27	3.1	28	79	10	100	50	0	12	37	1.40
64052198--64052349	52	2.9	53	78	10	168	48	0	11	40	1.40
64052201--64052349	27	5.7	26	70	12	99	47	0	12	40	1.41
64057124--64057151	6	4.7	6	100	0	56	50	0	17	32	1.47
64058725--64058753	15	1.9	15	100	0	58	37	27	0	34	1.57
64061679--64061947	46	5.6	46	84	10	358	34	14	22	28	1.93
64061739--64061947	52	4.1	51	85	9	293	35	13	22	28	1.92
64061825--64061858	7	4.7	7	88	3	50	44	2	26	26	1.69
64061911--64062056	37	4.0	37	92	1	233	36	16	21	25	1.94
64064610--64064652	21	2.0	21	86	4	59	58	2	4	34	1.32
64064734--64064812	27	3.0	26	76	9	79	46	0	11	41	1.40
64065650--64066328	168	4.0	168	94	0	1124	10	24	19	45	1.82
64073777--64073804	6	4.7	6	100	0	56	50	0	17	32	1.47
64075377--64075405	15	1.9	15	100	0	58	37	27	0	34	1.57
64078271--64078313	21	2.0	21	86	4	59	58	2	4	34	1.32
64078395--64078473	27	3.0	26	76	9	79	46	0	11	41	1.40
64079311--64079989	168	4.0	168	94	0	1133	10	24	19	45	1.82
64083162--64083220	27	2.2	27	96	0	109	35	10	27	27	1.89
64083315--64083349	15	2.4	15	90	4	54	48	0	8	42	1.33
64083374--64083421	10	4.9	10	76	2	53	25	6	2	66	1.26
64085628--64085677	24	2.1	24	96	0	91	28	26	24	22	1.99
64092565--64092589	5	5.0	5	100	0	50	80	0	20	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64093552--64093606	24	2.3	23	77	20	60	52	0	5	41	1.24
64095276--64095387	25	4.5	25	75	5	93	24	21	22	32	1.98
64103775--64103801	14	1.9	14	100	0	54	22	7	22	48	1.75
64107262--64107418	46	3.4	46	79	3	163	29	19	22	29	1.98
64110506--64110592	25	3.5	24	79	4	75	20	27	18	33	1.96
64110555--64110612	25	2.3	25	85	5	73	18	25	20	34	1.96
64110676--64110725	27	1.9	27	88	8	77	24	26	16	34	1.95
64112273--64112384	43	2.6	43	82	1	118	43	16	24	15	1.86
64113380--64113417	6	6.2	6	87	6	58	47	15	18	18	1.83
64113382--64113417	18	1.9	19	94	5	65	44	16	19	19	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216