genome.fa.s15.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  99  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30930300--30930344	13	3.2	13	82	17	63	51	22	11	15	1.75
30930300--30930347	16	3.2	15	88	8	64	50	22	12	14	1.77
30930413--30930446	16	2.1	16	89	10	52	50	8	2	38	1.49
30932298--30932336	16	2.3	18	91	8	64	12	15	0	71	1.14
30932324--30932358	18	1.9	18	88	11	54	22	20	0	57	1.41
30932346--30932474	6	20.0	6	66	15	53	7	20	2	68	1.25
30932314--30932431	30	4.0	29	68	20	84	11	18	0	68	1.25
30932397--30932472	18	3.9	18	75	18	71	6	22	3	67	1.31
30933345--30933396	24	2.3	22	90	6	77	19	5	7	67	1.36
30934785--30934812	14	2.0	14	100	0	56	35	14	14	35	1.86
30934872--30934906	16	2.2	16	94	0	61	48	22	14	14	1.79
30934972--30935005	16	2.1	16	88	0	50	47	8	2	41	1.50
30935938--30935977	15	2.6	14	85	14	53	22	2	25	50	1.62
30942099--30942132	17	2.0	17	88	11	52	41	0	5	52	1.25
30942418--30942468	24	2.1	24	92	0	84	43	17	27	11	1.84
30944118--30944177	9	6.1	9	75	22	50	10	6	3	80	1.01
30944633--30944664	7	4.6	7	92	0	55	12	12	40	34	1.81
30955761--30955819	24	2.5	24	81	10	68	1	28	1	67	1.10
30961990--30962031	17	2.5	17	92	0	66	73	9	4	11	1.22
30965609--30966154	49	11.1	49	89	7	822	31	8	30	29	1.86
30965609--30966154	96	5.5	97	88	8	809	31	8	30	29	1.86
30965748--30965869	61	2.0	61	100	0	244	31	6	31	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30965611--30966154	206	2.8	193	91	5	826	31	8	30	29	1.87
30965809--30966152	144	2.4	144	93	1	584	31	8	30	29	1.87
30966272--30966350	37	2.1	37	90	0	122	24	18	31	25	1.98
30972372--30974336	980	2.0	981	99	0	3896	31	16	15	36	1.90
30974680--30974740	16	3.8	16	86	2	77	42	24	3	29	1.70
30976930--30977180	41	6.1	41	78	6	222	36	13	25	24	1.92
30976963--30977179	82	2.7	81	83	3	256	36	13	25	23	1.92
30977077--30977136	20	3.0	20	69	11	50	31	16	30	21	1.96
30979074--30979114	20	2.0	20	95	0	73	26	14	12	46	1.80
30986286--30986324	20	1.9	21	89	5	62	35	12	25	25	1.92
30988158--30988194	19	2.0	18	89	5	56	5	27	0	67	1.12
30989452--30989481	11	2.7	11	89	0	51	20	3	0	76	0.92
30993402--30993617	27	8.0	26	84	6	236	31	17	25	25	1.97
30993402--30993601	54	3.7	53	86	5	269	32	16	26	25	1.96
30993402--30993614	80	2.7	80	85	3	277	31	17	24	25	1.97
30993694--30993752	24	2.5	24	86	5	84	22	8	23	45	1.79
30993868--30993921	26	2.1	26	85	0	72	16	18	27	37	1.93
30993878--30993933	26	2.2	26	83	0	67	12	21	33	32	1.91
30993924--30994164	32	7.5	32	78	8	215	19	19	22	38	1.94
30993924--30994170	64	3.9	63	80	6	257	19	20	22	37	1.94
30993924--30994164	96	2.5	96	83	5	299	19	19	22	38	1.94
30994182--30994246	22	3.0	22	72	4	60	18	23	15	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30996646--30996923	41	6.8	41	82	1	299	34	16	26	21	1.95
30996646--30996923	81	3.4	82	83	1	335	34	16	26	21	1.95
30996646--30996923	122	2.3	122	82	0	340	34	16	26	21	1.95
31000077--31000115	16	2.4	16	91	0	60	23	2	43	30	1.67
31001122--31001197	23	3.3	23	90	0	116	23	10	25	40	1.86
31004314--31004461	57	2.5	57	84	8	181	29	20	26	23	1.99
31020035--31020081	24	1.9	25	82	4	60	27	25	4	42	1.73
31020241--31020297	12	4.6	12	76	6	60	59	3	10	26	1.46
31020242--31020289	25	2.0	25	87	4	71	62	4	8	25	1.41
31029983--31030204	47	4.6	47	90	2	327	32	8	30	28	1.87
31030323--31030401	37	2.1	37	83	4	97	25	18	30	25	1.98
31037226--31037779	49	11.6	49	91	3	857	28	29	8	33	1.86
31037226--31037779	96	5.8	95	91	3	830	28	29	8	33	1.86
31037226--31037779	145	3.9	145	94	1	904	28	29	8	33	1.86
31043103--31043193	36	2.4	39	83	8	109	25	6	3	64	1.33
31044761--31044823	13	4.9	13	69	18	51	74	1	17	6	1.10
31044800--31044864	27	2.3	29	82	12	73	66	0	20	13	1.25
31044802--31044914	45	2.5	45	79	15	135	65	0	20	13	1.31
31044813--31044918	19	5.6	19	76	10	94	65	0	20	13	1.32
31052925--31052968	18	2.5	17	82	10	52	38	13	9	38	1.77
31059924--31060002	20	3.9	19	68	21	54	11	32	22	32	1.90
31059888--31060002	60	1.9	60	85	7	162	13	33	20	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31065902--31065953	27	1.9	27	84	0	68	30	5	11	51	1.61
31069333--31069436	52	2.0	52	100	0	208	26	13	13	46	1.80
31069358--31069445	25	3.5	24	66	23	63	26	11	12	50	1.74
31069561--31069587	14	1.9	14	100	0	54	29	14	18	37	1.91
31089787--31089855	10	6.9	10	76	12	70	27	14	31	26	1.95
31089779--31089842	20	3.3	19	89	6	101	28	17	29	25	1.97
31089779--31089854	40	1.9	39	91	2	125	27	15	31	25	1.96
31089787--31089855	20	3.5	20	87	0	102	27	14	31	26	1.95
31090460--31090513	15	3.7	15	78	7	58	3	24	1	70	1.13
31093683--31093722	18	2.2	18	91	8	64	72	2	20	5	1.15
31095492--31095563	33	2.1	34	89	2	110	40	6	13	38	1.72
31105246--31105275	14	2.1	14	100	0	60	63	6	0	30	1.20
31106973--31107070	48	2.0	48	100	0	196	39	16	14	29	1.88
31107718--31107766	25	2.2	22	82	17	57	22	4	51	22	1.65
31114539--31114580	15	2.5	17	88	11	61	69	0	21	9	1.17
31116914--31116983	31	2.3	31	82	2	88	27	24	14	34	1.94
31118857--31119061	27	7.6	27	87	3	250	30	28	14	26	1.95
31126125--31126327	27	7.6	27	86	3	248	30	28	15	26	1.96
31128061--31128085	11	2.3	11	100	0	50	36	16	32	16	1.90
31132528--31132567	12	3.5	12	80	19	50	12	17	2	67	1.33
31133662--31133695	14	2.5	13	86	9	50	17	5	0	76	0.98
31139380--31139578	39	4.9	40	79	9	176	26	23	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31146368--31146519	41	3.7	41	81	1	171	22	26	15	36	1.93
31146420--31146478	20	3.0	19	70	15	57	15	28	18	37	1.91
31146363--31146548	41	4.6	41	72	11	139	22	27	15	33	1.95
31146363--31146553	81	2.3	82	78	7	217	21	27	15	35	1.94
31148793--31148859	33	2.0	33	100	0	134	31	26	17	23	1.97
31152520--31152560	21	2.0	21	85	9	57	31	0	17	51	1.46
31168395--31168658	132	2.0	132	89	2	406	39	20	20	20	1.93
31177710--31177785	28	2.7	27	73	15	73	51	11	11	25	1.72
31177838--31177864	14	1.9	14	100	0	54	51	7	0	40	1.30
31179050--31179078	14	2.1	14	100	0	58	34	24	27	13	1.93
31189354--31189412	20	3.0	20	71	0	55	23	22	15	38	1.92
31191262--31191313	24	2.2	24	100	0	104	42	21	3	32	1.71
31196289--31196314	11	2.4	11	100	0	52	38	0	0	61	0.96
31196297--31196352	26	2.2	26	83	0	67	28	0	5	66	1.14
31199040--31199112	35	2.1	35	100	0	146	42	16	5	35	1.71
31206659--31206696	20	2.0	20	89	5	60	39	10	31	18	1.85
31207819--31207913	48	2.0	49	87	6	140	49	14	4	31	1.63
31212325--31212397	25	3.0	24	82	11	94	38	19	9	32	1.84
31220489--31220515	12	2.2	12	100	0	54	22	29	11	37	1.89
31221270--31221396	48	2.5	50	78	11	123	14	27	1	55	1.49
31221386--31221417	15	2.1	16	94	5	57	6	21	0	71	1.07
31222411--31222462	12	4.2	12	87	4	68	23	3	3	69	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31222413--31222457	13	3.5	13	84	6	65	15	2	4	77	1.02
31224729--31224801	25	3.0	24	82	11	94	38	19	9	32	1.84
31224916--31224945	9	3.3	9	95	0	51	46	10	3	40	1.54
31225204--31225273	25	2.8	25	76	8	79	27	21	24	27	1.99
31226273--31226413	44	3.2	44	63	15	117	32	16	17	34	1.92
31226236--31226430	90	2.2	90	100	0	390	36	14	15	33	1.88
31227955--31227998	21	2.1	21	83	8	54	38	11	13	36	1.81
31228862--31228993	50	2.6	52	75	6	135	34	15	12	36	1.86
31235991--31236028	17	2.2	18	85	4	51	63	2	23	10	1.39
31236010--31236064	12	4.6	12	76	13	51	65	0	21	12	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216