genome.fa.s15.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  182  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56905968--56906009	11	3.9	11	84	6	59	69	9	2	19	1.28
56905968--56906019	10	5.0	10	84	11	61	69	9	3	17	1.31
56905973--56906019	20	2.3	20	96	3	85	74	8	4	12	1.19
56907414--56907455	19	2.3	18	84	12	50	66	0	19	14	1.25
56929509--56930184	338	2.0	337	92	0	1138	36	15	16	31	1.91
56930630--56930701	37	1.9	37	94	0	126	20	11	18	50	1.77
56935892--56935931	3	13.3	3	100	0	80	0	32	0	67	0.91
56939107--56939169	30	2.1	31	87	3	92	65	7	3	23	1.34
56952212--56952257	18	2.5	19	85	3	58	65	2	2	30	1.16
56952248--56952297	21	2.3	21	93	3	82	62	2	0	36	1.07
56952248--56952323	21	3.7	21	79	10	68	63	3	0	32	1.13
56952268--56952356	39	2.3	40	82	9	112	64	3	1	31	1.17
56952275--56952354	9	8.6	9	69	11	54	63	3	1	31	1.20
56952283--56952365	20	4.2	20	72	9	71	65	4	1	28	1.21
56957817--56957971	42	3.7	42	82	6	179	15	22	16	45	1.85
56957817--56957971	84	1.8	84	82	5	197	15	22	16	45	1.85
56957818--56957971	21	7.3	21	69	5	96	15	22	16	44	1.86
56960111--56960152	21	2.0	21	86	13	59	0	28	0	71	0.86
56960110--56960192	25	3.7	22	68	22	57	2	21	3	72	1.12
56960133--56960198	35	1.9	35	82	14	84	4	15	6	74	1.18
56962666--56962717	24	2.2	24	89	0	77	55	9	1	32	1.43
56964634--56964685	24	2.2	24	89	0	77	55	9	1	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56965518--56965616	10	10.6	9	74	11	83	69	2	1	27	1.05
56965519--56965616	28	3.5	28	77	12	110	70	2	1	26	1.05
56965530--56965617	9	9.6	9	78	11	81	69	2	0	28	1.01
56965672--56965844	90	1.9	90	88	3	260	32	9	20	36	1.85
56967395--56967481	22	4.0	22	89	4	133	29	28	0	41	1.56
56967453--56967511	30	2.0	30	89	0	91	30	33	0	35	1.58
56967483--56967524	22	1.9	22	90	0	66	33	33	0	33	1.58
56967566--56967615	21	2.3	21	86	3	64	40	0	2	58	1.10
56969903--56970312	23	16.9	23	80	12	446	48	21	0	29	1.53
56969903--56970312	46	8.4	46	82	13	491	48	21	0	29	1.53
56969891--56970445	126	4.4	124	78	14	519	47	23	0	29	1.56
56969903--56970362	149	3.1	149	92	3	732	48	22	0	29	1.54
56969903--56970387	172	2.8	168	84	10	604	48	22	0	28	1.54
56969886--56970467	51	11.2	57	75	17	424	46	23	0	29	1.57
56973199--56973236	19	2.0	19	89	0	58	36	0	15	47	1.46
56973447--56973624	41	4.3	41	90	0	275	28	21	28	21	1.99
56973447--56973618	82	2.1	82	100	0	344	28	20	28	22	1.99
56976345--56976546	99	2.0	100	98	1	388	34	27	10	26	1.90
56976658--56976900	125	1.9	125	91	1	398	32	23	13	29	1.94
56978616--56978658	18	2.4	18	88	7	61	53	0	0	46	1.00
56980104--56980142	2	19.5	2	100	0	78	0	48	0	51	1.00
56985387--56985547	82	2.0	82	85	7	220	34	8	18	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56986471--56986621	50	3.0	49	74	13	139	60	5	1	33	1.28
56986625--56986672	25	2.0	24	91	4	78	60	0	4	35	1.16
56989926--56990110	41	4.5	41	84	4	169	24	27	20	27	1.99
56990009--56990192	41	4.5	41	92	2	248	30	24	18	26	1.98
56990525--56990938	201	2.1	196	93	3	704	42	15	4	37	1.67
56991913--56991937	13	1.9	13	100	0	50	40	24	4	32	1.73
57018716--57018851	51	2.7	51	81	3	166	25	16	25	32	1.96
57018855--57018949	45	2.1	45	86	0	136	25	18	24	31	1.98
57020129--57020212	41	2.3	33	71	28	87	38	7	23	30	1.82
57020138--57020222	41	2.1	41	100	0	170	34	8	23	34	1.85
57022007--57022046	21	1.9	21	89	0	62	25	22	37	15	1.93
57023341--57023543	103	2.0	103	85	5	277	24	22	18	34	1.96
57023289--57023551	51	5.0	53	75	11	204	26	22	17	33	1.96
57026157--57026186	3	10.0	3	100	0	60	66	0	0	33	0.92
57033524--57033558	16	2.1	16	89	10	52	51	0	0	48	1.00
57033828--57033864	14	2.6	15	83	12	51	21	0	32	45	1.52
57034321--57034347	7	3.9	7	100	0	54	0	0	25	74	0.83
57037087--57037138	24	2.2	24	85	0	68	53	9	3	32	1.51
57039716--57039791	23	3.3	23	84	0	107	30	25	21	23	1.99
57041673--57041724	24	2.2	24	89	0	77	55	9	1	32	1.43
57041829--57041879	22	2.3	22	83	6	68	11	11	7	68	1.39
57042051--57042104	17	3.1	17	73	10	56	35	0	3	61	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57042509--57042545	18	2.0	19	89	5	58	54	18	0	27	1.44
57043595--57043648	24	2.2	24	80	3	63	53	0	3	42	1.18
57043700--57043746	20	2.3	21	79	20	55	29	0	27	42	1.56
57043760--57043797	19	2.1	19	85	14	53	42	2	18	36	1.64
57045595--57045664	30	2.4	29	80	7	79	60	4	2	32	1.31
57046066--57046099	17	2.1	17	88	5	52	35	0	0	64	0.94
57048916--57048942	9	3.0	9	100	0	54	66	0	0	33	0.92
57048941--57048998	29	2.0	29	83	9	75	41	0	5	53	1.23
57052747--57052841	41	2.3	41	98	0	181	27	20	28	24	1.99
57053014--57053190	41	4.3	41	91	0	282	27	19	27	25	1.99
57060562--57060600	18	2.0	20	85	9	55	38	0	10	51	1.36
57060946--57061121	41	4.3	41	94	0	307	28	19	28	23	1.98
57063002--57063155	71	2.2	71	84	2	193	26	23	23	26	2.00
57067525--57067563	20	2.0	20	84	0	51	41	15	12	30	1.85
57083287--57083375	25	3.6	25	79	7	85	37	16	29	16	1.92
57085214--57085343	46	2.8	46	95	1	224	30	17	2	50	1.59
57087701--57087729	15	2.0	15	93	6	51	55	0	0	44	0.99
57087723--57087753	11	2.8	11	100	0	62	48	0	0	51	1.00
57088108--57088280	83	2.1	83	100	0	346	44	17	15	22	1.86
57099164--57099224	17	3.5	17	73	22	63	50	14	9	24	1.73
57099159--57099233	35	2.1	35	100	0	150	52	14	8	25	1.69
57102565--57102613	14	3.7	13	81	10	55	81	0	14	4	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57102568--57102612	19	2.3	19	85	14	65	82	0	13	4	0.82
57102566--57102613	20	2.4	21	82	10	73	81	0	14	4	0.84
57102751--57102813	28	2.3	27	83	8	81	55	7	15	20	1.65
57103652--57103699	23	2.1	23	88	0	69	27	16	4	52	1.62
57108579--57108615	17	2.2	16	90	4	56	5	27	5	62	1.39
57109159--57109210	27	2.0	27	81	11	63	17	1	13	67	1.32
57110905--57110976	30	2.4	30	86	4	92	37	16	1	44	1.57
57110929--57111014	30	2.9	29	86	5	109	26	22	6	44	1.78
57111585--57111645	26	2.3	26	81	13	72	77	1	21	0	0.86
57111582--57111645	13	4.8	12	74	22	56	76	1	21	0	0.87
57111588--57111645	27	2.2	26	84	9	73	77	1	20	0	0.86
57111576--57111645	15	5.1	14	72	17	58	75	1	22	0	0.88
57112275--57112318	20	2.2	20	87	0	61	36	9	11	43	1.72
57112540--57112608	24	3.0	22	72	23	61	42	8	8	40	1.67
57112592--57112642	15	3.1	15	82	17	66	25	13	11	49	1.76
57112592--57112926	17	18.1	18	69	19	158	31	14	11	43	1.80
57112606--57112926	18	17.2	19	69	20	164	31	14	10	42	1.80
57112661--57112812	35	4.3	36	78	12	120	30	14	10	44	1.79
57112680--57112850	53	3.2	53	78	9	145	30	14	10	43	1.79
57112794--57112941	20	7.7	20	69	16	71	32	14	10	41	1.81
57112999--57113042	20	2.1	21	88	12	65	38	11	11	38	1.77
57121243--57121312	19	3.7	20	79	7	74	84	8	4	2	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57122180--57122713	157	3.4	154	86	5	693	28	17	19	34	1.95
57122180--57122713	78	6.9	78	86	5	692	28	17	19	34	1.95
57123572--57123634	11	5.1	11	80	16	54	79	0	20	0	0.73
57123573--57123634	12	4.9	13	76	7	65	79	0	20	0	0.74
57123569--57123634	25	2.6	25	85	4	78	78	0	21	0	0.75
57124287--57124330	20	2.1	21	91	4	72	36	11	9	43	1.72
57124544--57124612	24	2.8	24	74	14	61	47	7	7	37	1.59
57124603--57124668	15	4.1	15	83	12	87	24	15	10	50	1.75
57124603--57124982	18	21.1	18	68	18	181	30	14	10	44	1.78
57124747--57124982	35	6.5	35	74	12	163	31	14	10	43	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216