genome.fa.s15.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  110  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34974704--34974804	44	2.3	44	80	1	121	23	20	19	35	1.96
34974948--34975171	94	2.4	94	83	3	272	25	24	20	29	1.99
34974948--34975211	94	2.8	94	82	2	271	24	24	21	29	1.99
34975297--34975408	50	2.2	50	80	0	125	25	24	23	26	2.00
34975413--34975581	87	1.9	88	85	1	232	26	26	21	25	2.00
34979182--34979234	21	2.5	21	87	3	70	33	32	1	32	1.69
34980165--34980198	15	2.3	15	89	0	50	35	29	32	2	1.73
34983895--34983947	21	2.5	21	90	3	79	33	33	1	30	1.69
34992499--34992538	20	2.0	21	90	5	64	67	7	2	22	1.28
34994996--34995020	12	2.1	12	100	0	50	68	0	8	24	1.16
34997192--34997246	22	2.6	21	85	2	65	36	7	10	45	1.67
34997229--34997279	22	2.3	23	82	3	68	41	0	7	50	1.31
35004960--35005130	58	2.8	60	79	6	152	23	12	12	51	1.73
35016048--35016132	30	3.2	25	76	15	71	50	14	7	28	1.68
35018119--35018155	4	9.0	4	88	5	56	24	2	2	70	1.14
35018215--35018253	17	2.2	18	86	13	55	30	5	2	61	1.31
35018215--35018299	3	29.3	3	69	19	56	30	3	4	61	1.33
35028632--35028695	21	3.1	21	78	13	62	29	1	6	62	1.29
35028657--35028702	20	2.2	21	84	3	58	26	2	6	65	1.28
35032216--35032477	44	5.8	44	75	7	211	34	16	19	29	1.94
35032216--35032399	95	1.9	95	85	0	251	34	15	19	30	1.93
35034134--35034217	31	2.7	32	85	10	113	38	2	0	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35034039--35034201	41	4.1	40	92	6	269	33	3	0	63	1.10
35034561--35034651	3	31.3	3	71	18	68	30	2	5	61	1.31
35040244--35040294	22	2.3	23	78	15	56	39	41	0	19	1.52
35040571--35040603	14	2.3	15	94	5	59	36	33	0	30	1.58
35041220--35041455	41	5.9	41	80	7	279	29	27	22	20	1.99
35041479--35041585	40	2.7	38	74	7	97	28	21	15	33	1.94
35043500--35043525	1	26.0	1	100	0	52	100	0	0	0	0.00
35047451--35047627	31	5.7	31	83	0	221	44	15	10	29	1.79
35047451--35047638	93	2.0	93	86	2	252	45	15	9	28	1.78
35051828--35052003	56	3.1	56	99	0	343	44	9	23	22	1.81
35053132--35053314	79	2.3	81	84	7	232	24	22	27	25	2.00
35053133--35053316	40	4.6	40	83	9	216	23	22	28	25	2.00
35053185--35053339	79	2.0	79	84	7	208	25	21	27	25	1.99
35055144--35055256	42	2.7	42	81	0	136	31	20	30	17	1.96
35065236--35065410	27	6.5	27	75	1	136	39	16	25	18	1.91
35065245--35065382	53	2.6	54	87	1	197	38	16	24	20	1.93
35067309--35067390	41	2.0	42	80	7	96	31	28	24	15	1.96
35073028--35073057	16	1.9	15	93	6	51	80	6	0	13	0.91
35081022--35081480	117	4.1	113	88	7	663	32	13	16	37	1.87
35081194--35081475	104	2.6	105	91	4	440	36	12	14	36	1.83
35081609--35081957	112	3.1	112	92	2	576	32	15	14	38	1.87
35081962--35081994	17	1.9	17	100	0	66	0	18	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35082315--35082371	29	1.9	30	92	3	98	50	10	5	33	1.59
35085810--35085835	5	5.2	5	100	0	52	38	0	0	61	0.96
35088405--35088447	21	2.0	21	86	0	59	37	32	0	30	1.58
35088415--35088447	11	3.1	11	91	8	59	33	39	0	27	1.57
35098767--35098825	30	2.0	30	86	3	84	33	6	8	50	1.59
35102163--35102351	50	3.7	50	79	7	175	26	19	27	26	1.99
35102607--35102645	20	2.0	20	90	10	62	56	5	23	15	1.59
35117461--35117549	45	2.0	45	90	0	142	34	23	16	24	1.95
35128915--35128970	28	2.0	28	96	0	103	23	17	19	39	1.92
35132699--35132731	16	2.0	17	88	5	50	51	3	18	27	1.60
35132864--35132932	26	3.0	22	68	15	57	17	14	27	40	1.88
35137531--35137574	3	14.7	3	95	0	79	31	2	0	65	1.05
35142298--35142360	26	2.4	27	97	2	119	41	11	0	47	1.39
35142365--35142394	15	1.9	16	93	6	53	66	20	6	6	1.38
35143026--35143075	15	3.1	15	85	8	64	44	14	0	42	1.44
35143786--35143851	29	2.4	28	92	5	107	48	0	10	40	1.38
35152501--35152545	22	2.0	22	83	8	56	44	2	0	53	1.13
35158187--35158211	13	1.9	13	100	0	50	32	4	24	40	1.73
35159307--35159455	42	3.5	43	79	11	146	27	19	24	28	1.99
35163264--35163297	16	2.2	15	89	5	50	44	0	0	55	0.99
35166772--35166820	10	4.8	10	80	11	55	32	2	0	65	1.04
35184620--35184653	15	2.3	15	100	0	68	44	5	8	41	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35185574--35185613	2	20.0	2	100	0	80	0	0	50	50	1.00
35194153--35194250	48	2.0	48	98	0	187	37	6	19	36	1.77
35195816--35195928	54	2.1	54	85	3	147	29	28	24	17	1.97
35196099--35196138	20	1.9	21	85	10	55	22	22	22	32	1.98
35197255--35197285	15	2.1	15	100	0	62	51	0	6	41	1.27
35201081--35201194	57	2.0	57	89	3	176	28	21	6	44	1.75
35204164--35204200	18	2.0	19	89	5	58	40	8	21	29	1.82
35209914--35209957	20	2.2	20	84	12	54	56	0	0	43	0.99
35211335--35211359	13	1.9	13	100	0	50	24	8	0	68	1.16
35212967--35213000	12	2.8	12	95	0	59	61	14	14	8	1.55
35213961--35214077	10	12.1	9	71	17	58	62	3	1	32	1.22
35213985--35214079	40	2.4	40	83	10	108	60	4	1	34	1.23
35214024--35214079	29	1.9	30	85	10	80	62	5	0	32	1.18
35214360--35214417	20	2.9	19	73	14	55	36	1	5	56	1.32
35215074--35215119	12	3.8	12	91	0	65	19	6	13	60	1.54
35215086--35215119	6	5.7	6	92	0	59	17	2	14	64	1.40
35215074--35215227	18	8.6	18	68	13	66	20	7	16	56	1.63
35215126--35215187	28	2.2	28	85	0	88	20	6	17	54	1.65
35215164--35215227	6	10.7	6	79	0	65	18	9	14	57	1.63
35215195--35215238	18	2.5	18	88	3	63	13	6	15	63	1.49
35215701--35215730	15	2.0	15	100	0	60	13	6	40	40	1.71
35217458--35217518	26	2.4	26	80	2	70	27	8	13	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35217421--35217623	96	2.1	96	93	1	345	26	8	18	46	1.78
35217553--35217639	25	3.3	27	75	23	80	26	6	13	52	1.65
35219082--35219166	36	2.4	36	89	0	134	49	25	5	18	1.70
35219082--35219185	36	2.9	36	85	2	102	50	24	5	19	1.68
35219513--35219554	3	13.7	3	90	5	66	2	30	0	66	1.04
35221864--35221900	3	12.3	3	100	0	74	32	0	32	35	1.58
35224386--35224426	14	2.9	14	86	13	57	58	4	0	36	1.20
35224375--35224425	15	3.4	14	81	10	57	58	3	0	37	1.16
35224558--35224591	17	2.0	17	88	0	50	35	8	2	52	1.47
35225283--35225308	3	8.7	3	100	0	52	69	0	0	30	0.89
35227527--35227585	24	2.5	24	75	10	59	10	23	37	28	1.88
35227574--35227605	3	10.7	3	100	0	64	0	31	34	34	1.58
35227527--35227635	54	2.0	54	82	7	132	7	22	37	32	1.82
35227587--35227686	39	2.6	39	75	15	98	6	21	36	37	1.78
35231716--35231747	15	2.1	15	100	0	64	25	12	34	28	1.92
35242386--35242418	15	2.2	15	94	0	57	42	9	18	30	1.81
35242943--35243002	28	2.1	29	87	3	86	53	1	30	15	1.51
35243015--35243052	20	2.0	20	89	5	60	31	0	34	34	1.58
35253400--35253445	10	4.5	10	83	2	56	47	23	2	26	1.63
35265423--35265479	28	2.0	28	86	6	80	75	7	5	12	1.17
35267124--35267235	25	4.5	25	86	4	138	30	25	17	26	1.97
35267124--35267235	50	2.2	50	87	6	156	30	25	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35273917--35273948	13	2.5	13	94	0	55	31	0	12	56	1.37
35274043--35274285	50	4.7	51	85	5	294	26	24	28	20	1.99
35276279--35276304	3	8.7	3	100	0	52	65	0	34	0	0.93
35279628--35279798	29	6.0	29	74	13	106	32	21	18	27	1.97
35279685--35279936	29	8.7	28	75	14	149	33	22	17	26	1.96
35279687--35279798	58	1.9	58	87	7	165	33	22	18	25	1.97
35282044--35282069	9	2.9	9	100	0	52	42	23	0	34	1.54
35283392--35283441	26	1.9	26	83	0	64	10	6	6	78	1.10
35291130--35291176	20	2.3	20	78	10	51	38	0	2	59	1.09
35299603--35299799	48	4.1	48	80	2	225	28	20	27	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216