genome.fa.s15.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  126  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39872646--39872698	23	2.4	22	75	9	54	9	18	1	69	1.25
39872691--39872730	18	2.2	18	86	0	53	7	25	2	65	1.32
39877311--39877386	26	2.9	27	72	9	75	50	0	11	38	1.39
39877768--39877801	13	2.5	13	90	4	50	23	23	26	26	2.00
39878404--39878470	23	2.9	23	82	4	73	44	2	17	34	1.64
39878564--39879022	54	8.4	54	78	4	377	38	14	20	27	1.91
39878565--39878989	162	2.6	162	81	4	435	38	13	19	28	1.90
39884003--39884034	16	1.9	17	93	6	57	50	0	6	43	1.27
39884915--39884956	16	2.7	16	89	10	61	83	0	7	9	0.81
39884915--39884956	21	2.0	21	90	4	66	83	0	7	9	0.81
39884915--39884957	22	2.0	22	86	9	61	83	0	6	9	0.80
39894042--39894119	29	2.7	29	86	2	104	51	10	2	35	1.50
39894054--39894125	28	2.6	27	86	6	90	50	11	4	34	1.57
39894708--39894781	37	2.0	37	100	0	148	48	10	8	32	1.67
39899669--39899746	29	2.7	29	84	2	95	50	12	1	35	1.49
39899687--39899763	28	2.8	28	86	4	93	49	12	5	32	1.63
39901455--39901550	33	3.2	33	64	27	84	44	14	9	31	1.77
39915107--39915203	7	13.9	7	85	0	86	38	0	29	31	1.58
39923825--39923856	14	2.3	14	100	0	64	6	15	46	31	1.71
39928947--39928978	14	2.3	14	94	0	55	9	15	43	31	1.78
39934926--39935206	95	3.0	94	87	2	375	24	17	22	35	1.95
39938128--39938198	26	2.7	26	86	6	90	33	9	28	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39942167--39942346	96	1.9	95	84	5	245	31	12	13	42	1.82
39953489--39953521	15	2.2	15	94	0	57	63	3	9	24	1.38
39959283--39959416	49	2.7	49	82	0	160	41	23	13	21	1.89
39961222--39961283	26	2.4	26	80	0	70	37	9	11	41	1.74
39964971--39965042	36	2.0	36	94	0	126	29	18	12	40	1.87
39964971--39965029	18	3.2	19	65	18	52	33	18	10	37	1.85
39968487--39968598	26	4.3	25	81	8	118	43	7	22	26	1.79
39968487--39968598	52	2.2	52	86	3	154	43	7	22	26	1.79
39968606--39968664	27	2.2	27	84	0	82	25	28	25	20	1.99
39968607--39968658	27	1.9	27	92	0	86	28	30	21	19	1.97
39969090--39969128	20	1.9	21	85	15	55	64	2	2	30	1.21
39973567--39973591	12	2.1	12	100	0	50	60	8	8	24	1.52
39978399--39978438	19	2.1	19	95	0	71	22	22	5	50	1.68
39979332--39979466	27	5.0	27	86	3	164	44	20	14	20	1.86
39987119--39987172	26	2.1	26	82	6	65	22	24	18	35	1.96
39987275--39987340	28	2.4	27	87	2	96	24	22	22	30	1.99
39987273--39987362	28	2.9	31	77	15	89	25	23	23	27	2.00
40011260--40011338	11	7.4	11	73	21	60	39	3	0	56	1.17
40011250--40011372	42	3.0	42	82	11	146	37	2	0	60	1.10
40011282--40011349	22	3.3	21	75	19	72	33	1	0	64	1.02
40011344--40011390	21	2.3	21	92	3	78	36	0	0	63	0.94
40011344--40011390	20	2.2	22	92	7	80	36	0	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40011260--40011368	53	2.1	53	91	5	177	37	2	0	59	1.12
40011260--40011390	51	2.5	53	84	7	162	38	2	0	59	1.10
40011344--40011405	20	2.9	21	85	9	63	37	0	3	59	1.13
40011260--40011390	53	2.5	52	85	6	151	38	2	0	59	1.10
40011557--40011607	22	2.3	22	75	18	52	49	0	3	47	1.20
40011829--40011908	37	2.2	37	86	4	108	43	0	1	55	1.08
40015169--40015223	23	2.4	23	79	11	60	32	5	0	61	1.19
40019162--40019205	19	2.5	17	85	10	61	31	9	2	56	1.43
40021541--40021603	30	2.1	31	85	8	85	53	17	3	25	1.58
40021811--40021849	18	2.2	18	86	9	53	64	2	0	33	1.08
40022539--40022594	27	2.1	27	83	6	69	33	3	0	62	1.12
40024090--40024129	21	1.9	21	84	0	53	57	7	17	17	1.62
40025690--40026566	132	6.6	132	93	0	1450	27	24	19	29	1.98
40025690--40026515	44	18.8	44	64	13	245	27	24	19	29	1.98
40028741--40028781	20	2.0	20	90	9	66	68	4	12	14	1.36
40032650--40032708	28	2.2	26	81	6	64	55	1	10	32	1.43
40033865--40035181	576	2.3	579	83	3	1653	31	16	21	30	1.96
40037786--40037821	13	2.4	16	86	13	51	72	0	27	0	0.85
40043024--40043077	25	2.2	25	82	0	63	37	14	9	38	1.79
40044906--40044942	15	2.4	16	90	4	58	75	0	24	0	0.80
40046730--40046798	35	1.9	36	91	2	113	33	21	14	30	1.93
40046730--40046808	36	2.2	35	86	6	106	31	24	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40051078--40051105	11	2.5	11	100	0	56	14	0	14	71	1.15
40051578--40051617	18	2.2	18	86	0	53	30	7	2	60	1.38
40052073--40052102	15	1.9	16	93	6	53	20	0	6	73	1.05
40058029--40058243	88	2.4	88	91	0	349	28	27	23	20	1.99
40058254--40058353	44	2.3	44	91	6	159	25	21	24	30	1.99
40058254--40058375	44	2.8	43	84	9	149	26	18	27	27	1.98
40058688--40058801	44	2.6	44	81	2	131	31	18	20	29	1.96
40060362--40060406	18	2.5	18	81	0	54	33	4	4	57	1.38
40060849--40060894	20	2.3	20	85	3	58	23	2	4	69	1.17
40090054--40090084	16	1.9	16	93	0	53	41	3	0	54	1.16
40090298--40090356	20	3.0	20	87	0	64	45	11	10	32	1.74
40090328--40090408	31	2.6	31	94	2	135	46	8	7	37	1.63
40094046--40094338	149	2.0	149	95	0	523	44	8	8	38	1.66
40094347--40094375	5	5.8	5	100	0	58	62	0	0	37	0.96
40100031--40100084	17	3.2	17	72	27	60	33	29	16	20	1.95
40100016--40100084	34	2.0	34	94	0	120	33	27	18	20	1.96
40102073--40102128	24	2.3	24	81	9	60	57	3	1	37	1.27
40103179--40103816	318	2.0	318	88	1	949	24	27	19	28	1.98
40108829--40108857	3	9.7	3	100	0	58	65	0	0	34	0.93
40109011--40109073	15	4.1	15	75	6	54	6	11	3	79	1.03
40113816--40113869	20	2.8	20	86	13	85	29	9	9	51	1.65
40114537--40114627	46	2.0	46	97	0	173	40	5	5	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40114752--40114795	23	1.9	23	85	0	61	40	20	11	27	1.86
40118349--40118377	15	1.9	15	100	0	58	13	13	0	72	1.13
40118374--40118444	5	13.2	6	82	14	68	32	2	15	49	1.59
40118375--40118448	11	7.5	11	69	23	58	32	2	16	48	1.60
40118366--40118421	27	2.1	27	100	0	112	28	7	10	53	1.62
40118403--40118448	20	2.2	21	92	7	85	32	0	19	47	1.50
40126929--40126977	20	2.5	20	82	0	71	44	4	0	51	1.20
40128229--40128289	32	1.9	32	96	0	113	50	18	3	27	1.62
40128229--40128302	32	2.5	30	87	10	100	51	18	2	27	1.60
40128230--40128316	27	3.0	27	83	11	77	51	18	3	26	1.62
40146825--40146893	31	2.3	30	87	2	102	43	13	7	36	1.71
40149312--40149357	14	3.5	14	71	17	53	30	36	13	19	1.90
40149308--40149359	25	2.1	25	100	0	104	32	34	11	21	1.89
40159839--40159901	29	2.1	30	85	8	85	22	17	23	36	1.95
40174445--40174478	15	2.3	15	100	0	68	29	0	11	58	1.33
40178048--40178158	25	4.4	25	81	8	127	20	26	18	34	1.96
40178048--40178185	50	2.8	50	83	4	154	20	25	20	34	1.97
40178048--40178185	25	5.5	25	77	10	120	20	25	20	34	1.97
40186561--40186629	21	3.3	21	76	8	68	14	10	33	42	1.79
40198216--40198247	16	2.0	16	93	0	55	3	6	6	84	0.86
40209035--40209074	21	1.9	21	85	10	55	27	10	2	60	1.42
40212027--40212084	4	14.5	4	100	0	116	24	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40214097--40214138	20	2.1	20	100	0	84	28	4	0	66	1.12
40216568--40216670	20	5.4	20	65	13	65	34	4	12	47	1.63
40216526--40216691	37	4.5	37	92	2	264	33	4	12	50	1.60
40216551--40216685	17	7.4	17	64	14	63	34	3	11	50	1.57
40216692--40216788	9	10.6	9	82	8	106	23	11	27	37	1.89
40217734--40217918	42	4.4	42	88	2	257	30	20	21	27	1.98
40217734--40217961	84	2.7	83	85	5	248	29	20	22	27	1.98
40219896--40219941	16	2.9	16	84	9	60	69	4	2	23	1.17
40219894--40219941	20	2.4	19	80	13	51	70	4	2	22	1.15
40220127--40220190	25	2.5	25	97	2	119	51	12	10	25	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216