genome.fa.s15.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  166  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52371871--52371924	16	3.6	15	76	18	51	12	20	24	42	1.87
52372558--52372600	19	2.3	19	88	4	61	37	2	4	55	1.33
52377403--52377427	9	2.8	9	100	0	50	32	20	12	36	1.89
52392892--52392959	31	2.2	31	86	2	93	60	7	14	17	1.57
52399193--52399485	50	5.8	50	88	0	433	25	22	31	20	1.98
52403368--52403398	16	1.9	16	93	0	53	74	0	3	22	0.96
52409488--52409521	6	5.7	6	100	0	68	14	35	32	17	1.91
52411486--52411595	42	2.6	43	84	5	143	32	24	18	24	1.97
52413808--52413868	28	2.2	28	87	0	86	27	31	19	21	1.97
52413816--52413873	28	2.1	28	93	0	98	25	32	22	18	1.97
52414606--52414652	13	3.4	14	80	14	53	53	6	0	40	1.27
52414758--52414802	19	2.4	19	85	7	65	64	8	0	26	1.23
52429945--52429977	17	2.0	17	88	5	50	27	6	30	36	1.81
52434666--52434705	19	2.1	19	100	0	80	30	15	27	27	1.96
52435568--52435637	27	2.6	27	95	0	122	28	27	25	18	1.98
52435757--52435849	35	2.6	34	81	6	105	31	17	18	33	1.94
52441816--52441883	16	4.2	16	77	7	66	27	26	2	42	1.70
52444910--52444942	5	6.6	5	92	0	57	45	0	54	0	0.99
52456552--52456585	16	2.0	18	88	11	54	29	52	0	17	1.45
52458291--52458512	111	2.0	111	89	5	342	40	13	11	34	1.81
52461431--52461476	13	3.5	13	78	0	56	28	2	28	41	1.68
52463539--52463571	14	2.4	14	94	0	57	51	15	15	18	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52464662--52464710	19	2.5	20	90	3	73	36	6	14	42	1.70
52464904--52464972	36	1.9	36	100	0	138	55	14	8	21	1.66
52469450--52469474	8	3.1	8	100	0	50	76	0	0	24	0.80
52472539--52472578	21	1.9	21	89	0	62	35	7	15	42	1.75
52478369--52478611	28	8.8	28	85	3	253	37	16	22	23	1.93
52478369--52478605	55	4.3	56	83	6	250	37	16	21	24	1.93
52478369--52478580	82	2.6	82	84	5	205	38	15	22	24	1.92
52491675--52491861	41	4.6	41	84	4	191	20	29	20	29	1.97
52491716--52491874	41	3.9	41	85	4	214	20	30	21	27	1.98
52499578--52499764	41	4.6	41	85	4	200	20	29	20	28	1.98
52499619--52499777	41	3.9	41	87	3	221	20	30	22	27	1.98
52504512--52504552	7	5.9	7	86	11	57	70	0	17	12	1.16
52505838--52506142	133	2.3	132	94	1	522	29	20	23	27	1.99
52506049--52506191	44	3.2	44	72	0	151	30	21	23	24	1.99
52506040--52506230	88	2.2	88	88	2	285	29	20	22	26	1.99
52506137--52506779	132	4.9	131	91	2	969	28	18	24	27	1.98
52505907--52506362	220	2.1	221	90	3	731	28	19	23	28	1.98
52507639--52507679	22	1.9	22	95	5	75	14	0	0	85	0.60
52508328--52508407	26	3.3	24	79	8	90	36	7	5	51	1.52
52512044--52512108	33	2.0	33	96	0	121	32	9	23	35	1.86
52513561--52513606	15	3.1	15	81	9	58	21	10	6	60	1.52
52513786--52513830	18	2.6	18	86	10	58	60	11	0	28	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52514220--52514260	19	2.2	19	95	0	73	46	0	36	17	1.48
52514561--52514674	31	3.8	29	75	13	88	47	2	2	47	1.30
52518949--52519022	10	7.1	10	79	14	62	79	0	14	5	0.90
52518963--52519017	6	8.8	6	88	9	76	81	0	14	3	0.82
52518949--52519017	19	3.6	18	86	11	77	81	0	14	4	0.84
52526740--52526786	25	1.9	24	86	4	67	10	8	12	68	1.40
52532181--52532289	39	2.8	39	84	2	130	33	17	32	16	1.92
52533205--52533243	16	2.4	17	83	16	55	23	0	7	69	1.14
52550681--52550759	27	2.8	28	79	11	72	56	3	3	35	1.35
52550701--52550759	30	2.0	30	86	6	84	57	1	3	37	1.25
52550796--52550845	24	2.1	24	85	7	66	64	0	8	28	1.22
52551093--52551184	3	30.0	3	71	16	55	65	4	2	28	1.23
52551152--52551185	7	5.0	7	92	7	61	73	0	0	26	0.83
52551451--52551495	23	1.9	24	90	4	74	44	13	6	35	1.70
52551451--52551527	19	3.7	21	83	11	79	44	12	7	35	1.72
52551812--52552063	128	2.0	128	82	7	305	28	21	19	30	1.98
52552378--52552745	44	8.5	44	77	6	367	28	23	18	29	1.98
52552540--52552618	38	2.1	38	82	0	95	25	20	17	36	1.94
52552416--52552745	170	1.9	170	83	4	425	29	22	17	30	1.97
52552388--52552705	126	2.5	126	85	4	404	29	22	18	29	1.97
52552745--52553067	88	3.7	88	92	0	538	19	23	28	28	1.98
52552783--52553009	44	5.2	44	63	4	143	22	24	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52552894--52553035	43	3.3	43	68	7	133	18	26	28	26	1.98
52552822--52553053	44	5.3	44	65	8	139	20	23	30	26	1.98
52559241--52559285	22	2.1	21	87	4	63	73	6	0	20	1.05
52559625--52559668	17	2.6	17	85	3	63	47	0	11	40	1.39
52559791--52559832	3	14.0	3	89	0	66	61	0	4	33	1.17
52560148--52560245	21	4.7	21	87	8	121	41	14	8	35	1.75
52566366--52566542	26	6.6	27	81	7	198	26	15	28	29	1.96
52566366--52566542	54	3.3	54	82	7	207	26	15	28	29	1.96
52566365--52566542	81	2.2	81	83	6	218	26	16	28	29	1.97
52568274--52568504	40	5.8	40	90	3	315	21	21	30	26	1.98
52568275--52568532	80	3.2	80	84	5	310	22	20	29	26	1.99
52576671--52576723	26	2.0	26	100	0	106	18	24	33	22	1.97
52576631--52576763	66	2.0	66	100	0	266	19	21	31	27	1.97
52576697--52576884	40	4.7	41	90	2	249	21	21	30	25	1.98
52582691--52582726	18	2.0	18	88	0	54	52	2	0	44	1.15
52582709--52582747	20	1.9	20	84	5	51	43	0	0	56	0.99
52589649--52589932	33	7.8	33	68	21	165	21	20	26	32	1.97
52589649--52589930	75	3.8	75	91	0	465	21	20	26	32	1.97
52597192--52597319	33	3.6	33	77	17	148	18	20	27	33	1.96
52597225--52597403	42	4.5	42	82	12	250	22	18	27	31	1.97
52597188--52597358	75	2.3	75	97	0	324	21	18	28	32	1.96
52597225--52597440	117	1.8	117	95	0	396	21	19	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52604157--52604228	37	1.9	37	88	5	110	40	30	12	16	1.86
52612167--52612214	22	2.0	25	88	11	75	35	16	0	47	1.47
52613602--52613634	17	1.9	17	93	0	57	42	0	12	45	1.41
52613984--52614032	20	2.4	22	83	12	61	38	10	2	48	1.48
52642277--52642751	98	4.9	99	92	1	737	35	8	18	37	1.81
52642444--52642600	48	3.2	48	63	22	119	37	6	17	38	1.75
52646727--52646884	81	1.9	82	90	1	255	38	10	12	38	1.77
52650873--52650904	5	6.4	5	96	0	55	18	40	25	15	1.90
52653971--52654119	42	3.5	42	79	3	147	42	16	22	17	1.88
52654345--52654457	42	2.7	42	84	2	138	39	17	25	16	1.91
52653832--52654532	349	2.0	349	99	0	1384	42	17	16	22	1.88
52657502--52657604	54	1.9	54	93	0	179	34	11	10	42	1.76
52666319--52666369	23	2.2	23	82	10	59	35	0	0	64	0.94
52666314--52666379	32	2.1	30	91	5	105	34	0	0	65	0.93
52666332--52666376	23	1.9	24	90	4	74	31	0	0	68	0.89
52666332--52666391	21	2.7	23	84	7	61	31	1	0	66	1.01
52666382--52666469	26	3.3	26	73	17	74	25	2	4	68	1.20
52666662--52666696	17	1.9	18	88	11	54	74	2	0	22	0.95
52670911--52670954	23	1.9	23	86	9	63	70	4	6	18	1.27
52670924--52670966	17	2.4	19	85	11	56	72	4	11	11	1.27
52674747--52674857	39	3.1	39	76	20	141	63	0	3	33	1.12
52674797--52674877	22	3.8	22	80	6	96	61	0	4	33	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52674814--52674876	11	5.5	11	75	5	54	61	0	4	33	1.17
52674733--52674785	10	4.9	11	77	13	65	56	0	1	41	1.10
52674795--52674895	22	4.7	22	78	9	77	62	0	3	33	1.14
52676389--52676457	16	4.2	16	92	3	120	24	1	37	36	1.65
52676389--52676457	33	2.1	32	94	2	120	24	1	37	36	1.65
52676438--52676528	45	2.0	45	85	2	121	27	6	28	37	1.82
52676693--52676727	18	2.0	17	88	5	52	54	0	0	45	0.99
52679842--52679950	33	3.3	33	80	12	127	32	8	17	42	1.79
52679897--52679999	51	2.0	50	94	5	181	28	7	18	45	1.77
52680066--52680246	86	2.1	86	98	1	355	47	7	4	40	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216