genome.fa.s15.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  36  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10310678--10310752	27	2.8	27	84	11	109	44	20	16	20	1.87
10310612--10310783	54	3.2	54	78	8	145	44	18	14	23	1.86
10310885--10311106	109	2.0	109	93	0	381	19	17	30	32	1.95
10311099--10311150	26	2.0	26	96	0	95	17	23	25	34	1.96
10311257--10311375	28	4.3	28	88	7	190	21	23	23	31	1.99
10313272--10313571	27	11.2	27	82	1	316	41	20	19	19	1.91
10313307--10313531	80	2.8	79	87	4	308	40	22	19	18	1.92
10313269--10313571	107	2.8	107	83	4	360	41	20	18	19	1.91
10317512--10317648	62	2.2	62	82	2	168	23	23	29	24	1.99
10318837--10318906	28	2.5	28	83	4	88	55	14	10	20	1.67
10320306--10320373	29	2.3	30	80	5	77	57	2	2	36	1.29
10320476--10320509	17	2.0	17	88	0	50	70	2	17	8	1.25
10325372--10325434	25	2.5	25	89	0	99	26	23	22	26	2.00
10329735--10329794	5	12.2	5	84	10	79	36	0	1	61	1.06
10330609--10330652	3	14.7	3	80	0	52	36	0	2	61	1.09
10333199--10333783	300	2.0	299	89	1	902	31	21	15	31	1.95
10336402--10336435	16	2.2	16	89	5	52	32	5	0	61	1.20
10338474--10338518	3	15.0	3	100	0	90	33	0	0	66	0.92
10341112--10341178	27	2.6	26	85	4	91	52	2	23	20	1.61
10351600--10351739	37	4.2	34	65	27	84	40	0	2	56	1.19
10351673--10351725	18	2.9	18	94	2	88	37	1	1	58	1.20
10351885--10351977	44	2.1	46	87	4	136	35	29	4	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10353180--10353695	51	10.5	51	81	9	552	16	6	46	30	1.71
10353180--10353695	153	3.5	153	84	8	726	16	6	46	30	1.71
10353438--10353759	87	3.6	87	78	14	362	17	6	45	30	1.72
10353177--10353757	186	3.0	186	88	5	784	15	6	46	30	1.71
10353387--10353644	135	1.9	136	93	2	446	15	6	46	31	1.72
10355157--10355242	42	2.0	44	86	8	124	52	2	3	41	1.31
10362069--10362095	13	2.1	13	100	0	54	33	14	22	29	1.94
10362329--10362467	75	1.9	75	81	6	174	33	17	21	26	1.96
10364084--10364124	17	2.4	17	87	0	55	34	34	17	14	1.90
10365650--10365697	19	2.4	19	82	6	51	66	4	4	25	1.27
10368395--10368637	50	4.8	50	91	0	378	20	31	22	25	1.98
10368847--10369047	41	4.9	41	86	1	242	23	25	19	30	1.98
10369882--10369910	11	2.7	11	94	5	51	0	20	0	79	0.74
10369879--10369910	16	1.9	17	93	6	57	0	21	0	78	0.76
10376028--10376201	41	4.2	41	86	0	204	23	24	20	32	1.98
10377039--10377067	11	2.7	11	94	5	51	0	20	0	79	0.74
10377036--10377067	16	1.9	17	93	6	57	0	21	0	78	0.76
10382609--10382770	41	4.0	41	90	1	227	22	27	20	29	1.98
10383613--10383641	11	2.7	11	94	5	51	0	20	0	79	0.74
10383610--10383641	16	1.9	17	93	6	57	0	21	0	78	0.76
10384902--10384926	13	1.9	13	100	0	50	68	24	0	8	1.16
10386799--10387041	50	4.8	50	88	0	342	20	30	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10387136--10387165	13	2.3	13	94	0	51	50	13	3	33	1.58
10387379--10387434	29	1.9	29	82	7	69	30	23	3	42	1.71
10391033--10391120	20	4.3	20	71	7	70	42	21	23	12	1.87
10392531--10392581	26	2.0	24	88	7	75	29	11	7	50	1.67
10394407--10394520	54	2.1	54	88	3	167	45	20	14	19	1.85
10394402--10394520	27	4.4	27	78	9	136	45	19	15	19	1.86
10394546--10394602	25	2.2	25	84	9	71	21	14	21	43	1.87
10398893--10398942	25	2.0	25	100	0	100	40	8	16	36	1.77
10399210--10399252	21	2.0	21	100	0	86	39	18	9	32	1.83
10399972--10400034	33	1.9	33	86	0	90	46	11	14	28	1.78
10400185--10400229	15	3.0	15	77	9	56	20	13	0	66	1.24
10402465--10402529	31	2.1	32	82	2	78	40	1	1	56	1.18
10402477--10402637	59	2.6	62	74	16	154	40	4	1	52	1.34
10402506--10402573	27	2.6	25	80	15	68	39	4	0	55	1.20
10406255--10406308	29	2.0	29	82	13	71	44	5	7	42	1.55
10407099--10407156	27	2.1	27	84	6	73	50	0	1	48	1.11
10407123--10407208	37	2.4	34	77	14	82	50	0	3	46	1.18
10408678--10409141	51	9.5	51	81	10	540	12	6	49	31	1.66
10409108--10409264	36	3.9	36	71	22	125	19	7	44	28	1.78
10409061--10409314	87	2.9	87	93	0	418	16	7	47	28	1.73
10408775--10409228	150	3.2	139	79	10	484	14	6	48	31	1.70
10409237--10409440	45	4.1	45	74	18	165	12	5	50	31	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10409238--10409468	51	4.5	51	80	12	258	13	6	48	31	1.67
10409238--10409394	57	2.9	55	83	5	178	10	5	51	31	1.60
10409325--10409356	3	10.7	3	93	0	55	3	0	65	31	1.08
10409337--10409446	45	2.4	45	95	0	193	13	5	50	30	1.64
10414415--10414486	36	2.0	36	81	13	85	44	0	9	45	1.36
10416598--10416846	124	2.0	123	91	0	399	40	11	19	28	1.87
10420873--10420926	11	5.5	10	80	14	60	31	0	0	68	0.90
10436377--10436431	24	2.3	24	87	0	83	36	20	25	18	1.94
10436477--10436532	26	2.2	26	83	6	69	35	19	28	16	1.93
10445337--10445367	5	6.2	5	100	0	62	0	38	0	61	0.96
10446655--10446709	24	2.3	24	87	6	76	38	18	23	20	1.93
10446751--10446799	26	1.9	25	87	4	71	34	18	24	22	1.96
10448811--10449068	140	1.8	140	87	1	383	27	20	20	31	1.97
10451208--10451237	16	1.9	15	93	6	51	43	0	10	46	1.37
10455371--10455517	35	4.5	35	71	14	132	25	21	15	37	1.93
10457186--10457217	3	10.7	3	100	0	64	65	0	0	34	0.93
10460245--10461084	188	4.5	188	83	0	939	27	20	19	32	1.97
10460245--10461084	282	3.0	282	82	1	979	27	20	19	32	1.97
10460388--10461010	44	13.3	44	66	21	198	26	21	18	32	1.97
10460245--10461076	94	8.9	94	80	2	812	27	20	19	32	1.97
10468759--10468787	14	2.1	14	93	6	51	0	10	6	82	0.83
10474062--10474379	25	12.4	24	69	19	114	29	6	4	60	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10474186--10474251	31	2.1	31	83	5	80	27	3	6	63	1.32
10474255--10474303	22	2.3	22	89	3	73	28	6	4	61	1.38
10474229--10474329	47	2.2	46	84	8	125	26	4	5	62	1.39
10474059--10474403	26	13.4	25	73	12	177	29	6	4	59	1.42
10474353--10474400	24	2.0	23	84	4	60	29	12	4	54	1.56
10474292--10474403	49	2.2	51	79	4	120	28	7	5	58	1.46
10479535--10479771	46	5.5	45	73	14	189	27	18	21	32	1.97
10479402--10479775	169	2.2	170	87	5	531	26	20	20	31	1.98
10493903--10493936	17	2.0	16	88	11	50	61	0	0	38	0.96
10495887--10495977	18	5.1	18	70	11	71	54	4	0	40	1.20
10499179--10499285	26	4.3	25	81	6	94	32	2	1	62	1.20
10499151--10499285	51	2.6	51	81	8	141	30	2	2	64	1.20
10499237--10499285	22	2.2	20	77	19	53	34	4	0	61	1.15
10499225--10499290	24	2.9	22	82	8	69	30	4	0	65	1.13
10499170--10499295	25	5.0	25	74	13	100	30	3	1	63	1.22
10499177--10499328	51	3.0	49	80	7	135	31	3	2	62	1.25
10499313--10499432	25	4.9	24	71	12	93	27	3	5	64	1.30
10499313--10499401	25	3.6	24	79	8	99	25	2	3	68	1.17
10500411--10500458	21	2.3	21	86	10	64	14	16	10	58	1.63
10504482--10504514	14	2.3	15	89	5	50	27	15	33	24	1.95
10505483--10506065	44	12.8	46	71	11	161	32	16	20	30	1.95
10505485--10505978	181	2.7	182	84	3	600	33	16	20	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10505848--10506095	44	5.5	46	76	9	215	31	18	19	29	1.96
10505710--10506066	137	2.6	135	75	6	342	34	18	19	28	1.95
10505848--10506097	88	2.7	91	81	6	283	32	18	20	29	1.96
10507739--10507880	24	5.6	25	79	9	121	30	4	1	64	1.21
10507733--10507831	28	3.8	27	79	12	109	28	4	2	65	1.21
10507739--10508025	50	5.9	49	74	17	178	29	4	3	62	1.33
10507739--10507880	26	5.6	25	76	12	121	30	4	1	64	1.21
10507811--10507871	22	2.8	20	77	20	59	34	3	0	62	1.12
10507899--10508020	25	5.0	25	67	17	76	27	5	5	60	1.42
10507899--10507987	25	3.6	24	76	8	90	25	4	4	65	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216