genome.fa.s15.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  153  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48468982--48469138	38	4.2	38	86	0	217	32	31	21	14	1.93
48475006--48475049	15	2.9	15	93	0	79	27	29	13	29	1.94
48476131--48476157	13	2.1	13	100	0	54	62	7	0	29	1.22
48481913--48481946	17	2.0	17	88	0	50	79	5	2	11	1.02
48483171--48483216	19	2.4	19	88	0	65	32	23	13	30	1.93
48483171--48483225	19	2.9	19	83	0	56	30	23	14	30	1.94
48489501--48489618	43	2.8	41	71	10	112	33	25	15	25	1.95
48489773--48489825	23	2.4	22	81	9	63	54	7	1	35	1.40
48497013--48497073	21	2.8	21	78	12	61	40	1	1	55	1.19
48497028--48497087	21	3.0	21	80	9	54	40	3	1	55	1.27
48497159--48497244	45	1.9	45	82	0	109	41	8	3	46	1.50
48502413--48502437	13	1.9	13	100	0	50	0	24	40	36	1.55
48522679--48522791	51	2.2	51	100	0	226	38	20	7	33	1.82
48524857--48524987	21	6.2	21	72	7	86	19	33	21	25	1.97
48524872--48525009	63	2.2	63	98	0	267	18	34	20	27	1.95
48524873--48524990	21	5.7	20	76	11	112	16	34	22	26	1.95
48524873--48525010	21	6.6	21	76	15	90	17	34	21	27	1.95
48525855--48525902	24	2.0	24	91	0	78	35	8	16	39	1.79
48527300--48527346	20	2.3	20	85	3	58	68	0	2	29	1.02
48527882--48527947	31	2.2	30	78	7	80	48	7	0	43	1.31
48530120--48530212	48	1.9	48	89	4	143	21	24	7	46	1.77
48531591--48531638	18	2.5	19	86	6	62	20	25	2	52	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48532436--48532527	40	2.3	40	94	0	157	40	20	4	34	1.73
48532831--48532887	26	2.2	26	81	6	62	52	7	3	36	1.46
48533255--48533287	17	1.9	17	93	0	57	39	12	0	48	1.40
48543252--48543340	45	2.0	45	84	0	115	37	13	24	24	1.92
48549470--48549582	19	5.8	19	83	4	154	37	11	15	36	1.83
48549471--48549577	40	2.7	40	88	2	164	37	12	14	36	1.83
48550215--48550264	24	2.0	25	85	14	68	32	10	0	58	1.31
48550934--48551129	98	2.0	97	93	1	338	30	10	22	37	1.87
48551846--48551886	18	2.4	18	88	8	59	63	0	12	24	1.28
48556360--48556423	25	2.5	27	85	12	98	7	0	42	50	1.31
48562260--48562295	18	2.1	18	94	5	65	50	2	11	36	1.53
48564084--48564180	40	2.5	40	81	8	117	46	27	15	10	1.78
48568010--48568076	20	3.0	22	77	18	68	58	4	0	37	1.19
48572684--48572893	76	2.7	76	82	9	264	32	10	9	47	1.71
48573309--48573585	77	3.6	75	76	10	222	37	8	12	40	1.75
48573402--48573583	76	2.4	77	78	9	192	39	9	11	39	1.74
48575638--48575682	24	1.9	24	90	4	74	40	4	11	44	1.60
48581805--48581847	21	2.0	21	86	8	61	55	4	0	39	1.20
48582128--48582175	21	2.3	21	82	10	62	58	4	0	37	1.18
48582128--48582170	22	2.0	22	86	8	63	62	4	0	32	1.15
48584961--48585314	125	2.8	126	90	3	579	29	15	21	32	1.95
48589481--48589511	15	2.0	16	93	6	55	67	6	0	25	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48589666--48589716	22	2.3	22	100	0	102	39	0	33	27	1.57
48597782--48597849	29	2.3	29	85	5	75	50	2	5	41	1.42
48598288--48598331	20	2.2	21	84	8	56	36	0	6	56	1.26
48598428--48598498	23	3.0	23	81	4	97	36	2	1	59	1.21
48602253--48602359	40	2.7	40	79	4	119	41	21	16	20	1.91
48604025--48604057	12	2.9	12	86	13	52	51	0	6	42	1.26
48604023--48604085	20	3.1	20	82	11	83	52	0	4	42	1.22
48604026--48604085	10	5.8	10	82	11	68	50	0	5	45	1.23
48604020--48604091	30	2.4	29	82	11	92	47	1	4	47	1.30
48606433--48606516	27	3.1	27	77	19	102	20	3	3	72	1.15
48607200--48607227	12	2.3	12	100	0	56	32	7	10	50	1.64
48608483--48608836	43	8.3	42	77	4	332	24	15	28	30	1.96
48608481--48608814	86	3.9	85	82	5	388	25	15	28	30	1.96
48622191--48622277	27	3.2	26	70	15	70	20	21	34	22	1.97
48622523--48622557	3	11.7	3	87	0	52	31	0	5	62	1.18
48624850--48625303	157	2.9	151	72	17	397	31	10	8	50	1.66
48625704--48625776	35	2.1	35	87	10	105	0	35	1	63	1.04
48628665--48628748	29	2.9	30	77	8	84	34	25	13	27	1.93
48641495--48641588	40	2.3	40	81	0	107	23	14	30	30	1.95
48642443--48642510	27	2.5	28	83	7	86	38	8	0	52	1.33
48643003--48643590	246	2.4	250	80	7	628	37	9	6	45	1.64
48643779--48643824	19	2.3	20	85	3	67	41	2	10	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48647155--48647198	19	2.3	19	88	7	63	25	20	0	54	1.45
48649917--48649965	22	2.1	24	82	14	59	34	12	0	53	1.39
48662864--48662894	7	4.4	7	95	0	53	22	3	0	74	0.96
48666584--48666659	29	2.5	31	82	4	93	25	11	14	48	1.77
48666587--48666659	31	2.4	29	81	4	83	26	12	13	47	1.78
48678568--48678674	38	2.9	38	83	8	132	56	5	9	28	1.54
48681428--48681457	15	2.0	15	93	0	51	43	20	6	30	1.77
48686346--48686403	30	1.9	31	85	3	82	31	0	10	58	1.31
48693983--48694017	16	2.2	16	100	0	70	57	5	0	37	1.23
48694277--48694317	17	2.6	16	82	14	50	14	9	0	75	1.04
48697126--48697184	18	3.3	18	90	0	91	38	22	11	27	1.89
48697126--48697192	27	2.5	27	87	0	89	38	20	11	28	1.88
48697126--48697192	9	7.4	9	80	6	73	38	20	11	28	1.88
48697295--48697348	23	2.3	23	87	0	72	12	1	44	40	1.54
48700443--48700506	25	2.3	27	74	15	51	76	7	0	15	1.00
48700443--48700493	19	2.5	21	81	12	61	78	7	0	13	0.96
48700435--48700506	6	11.7	6	80	14	58	75	8	0	16	1.04
48705196--48705227	16	1.9	17	93	6	57	37	0	0	62	0.95
48705754--48705782	2	14.5	2	100	0	58	48	0	0	51	1.00
48707187--48707254	33	2.0	34	86	8	95	29	7	14	48	1.71
48709744--48709797	3	18.0	3	100	0	108	66	0	0	33	0.92
48711143--48711880	125	5.8	129	87	3	1007	26	21	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48711171--48711785	85	7.2	84	71	11	335	27	21	21	30	1.98
48711923--48712194	50	5.4	49	75	12	259	24	23	19	31	1.98
48711927--48712188	100	2.6	100	96	1	481	24	23	19	32	1.97
48712406--48712563	44	3.6	44	85	1	192	27	25	18	28	1.98
48714599--48714658	25	2.4	25	88	2	84	56	5	15	23	1.58
48718755--48718780	3	8.7	3	100	0	52	34	0	0	65	0.93
48721178--48721720	127	4.3	127	94	0	960	25	22	22	28	1.99
48721348--48721805	87	5.4	87	74	11	419	25	22	22	29	1.99
48726540--48726598	28	2.1	28	87	0	82	64	8	11	15	1.49
48741298--48741379	24	3.4	24	81	6	103	19	35	1	43	1.59
48741556--48741610	26	2.1	26	83	6	67	29	3	0	67	1.08
48745194--48745286	19	5.1	19	68	12	68	30	10	12	46	1.76
48745175--48745296	54	2.3	54	92	0	208	31	10	15	41	1.81
48749939--48750055	57	2.1	57	98	0	225	35	11	17	35	1.86
48752019--48752311	132	2.2	132	80	3	338	28	18	24	29	1.98
48751982--48752331	44	8.0	43	81	4	292	28	18	25	28	1.98
48752026--48752370	132	2.6	131	78	7	331	28	17	24	28	1.98
48752305--48752461	44	3.6	43	72	8	138	27	21	24	26	1.99
48752308--48752468	87	1.9	87	89	0	232	27	21	25	25	1.99
48752337--48752507	87	2.0	87	81	4	202	27	23	22	26	2.00
48752460--48752668	88	2.4	88	83	2	251	27	26	23	22	2.00
48753012--48753288	45	6.0	45	78	8	279	29	14	24	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48753037--48753320	96	3.0	96	81	7	282	29	16	25	28	1.97
48753419--48753584	44	3.8	43	66	17	99	28	21	25	24	1.99
48753343--48753542	88	2.3	88	84	1	249	32	20	24	23	1.98
48754844--48754881	15	2.5	15	87	8	51	36	0	2	60	1.11
48755014--48755086	27	2.8	27	80	12	80	39	6	0	53	1.28
48755014--48755097	27	3.2	27	77	13	77	39	8	0	52	1.32
48757455--48757530	23	3.3	23	66	23	68	47	13	11	27	1.77
48757438--48757531	47	2.0	47	100	0	188	46	12	12	27	1.78
48759622--48759648	5	5.4	5	100	0	54	59	0	0	40	0.98
48763842--48764035	26	7.3	26	81	7	178	28	24	12	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216