genome.fa.s15.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  212  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65634184--65634603	141	3.0	140	79	7	422	46	17	9	26	1.78
65634477--65635176	94	7.6	93	74	11	417	43	14	7	34	1.74
65634467--65635447	184	5.4	180	73	11	607	44	14	7	33	1.73
65634467--65635439	91	10.6	90	72	11	503	44	14	7	33	1.73
65634492--65635439	278	3.4	273	74	11	667	44	13	7	34	1.72
65634482--65635500	94	11.1	93	71	12	281	44	14	7	34	1.73
65635824--65636229	91	4.5	91	75	10	271	46	15	8	30	1.74
65637768--65637818	13	3.9	13	72	10	50	39	19	3	37	1.70
65642105--65642281	46	3.8	46	88	0	264	28	24	9	37	1.87
65643478--65643524	17	2.8	17	90	3	69	55	17	0	27	1.42
65644541--65644615	34	2.2	33	84	9	98	25	29	1	44	1.63
65644541--65644617	22	3.5	22	81	18	97	25	28	1	44	1.62
65644541--65644617	11	6.9	11	74	21	72	25	28	1	44	1.62
65652510--65652579	26	2.5	28	75	6	72	67	1	4	27	1.18
65652912--65652993	19	4.3	19	69	14	53	21	0	8	69	1.15
65655945--65656174	40	5.7	40	74	7	169	33	18	21	26	1.96
65655945--65656285	123	2.7	124	82	6	371	35	18	19	25	1.95
65657086--65657128	18	2.4	18	88	0	59	41	44	2	11	1.53
65657236--65657276	9	4.6	9	87	0	55	24	4	21	48	1.69
65667780--65667852	30	2.4	30	83	0	83	35	23	4	36	1.74
65668021--65668063	20	2.3	18	88	11	61	83	4	11	0	0.78
65668354--65668411	27	2.0	28	90	9	91	79	3	17	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65668693--65668769	10	7.8	10	72	18	63	77	1	20	0	0.83
65668730--65668769	7	5.7	7	82	11	55	85	0	15	0	0.61
65668695--65668768	18	3.8	18	70	20	60	78	1	20	0	0.83
65668918--65668959	19	2.2	19	83	8	50	33	0	0	66	0.92
65669075--65669143	21	3.6	21	70	21	71	34	13	13	39	1.83
65669072--65669162	37	2.5	37	82	8	123	32	14	12	40	1.83
65669097--65669161	19	3.7	17	73	15	53	33	13	12	40	1.82
65669276--65669378	20	5.4	20	72	16	69	42	14	8	33	1.77
65669311--65669390	20	3.8	21	77	9	83	40	16	7	36	1.77
65671082--65671110	6	4.8	6	100	0	58	65	17	0	17	1.27
65671157--65671206	26	1.9	26	88	8	75	26	10	18	46	1.80
65701922--65701958	18	2.1	18	94	0	65	67	24	0	8	1.17
65701934--65701962	15	1.9	15	100	0	58	68	24	0	6	1.13
65705459--65705531	31	2.4	31	83	2	85	38	12	5	43	1.65
65705991--65706049	31	1.9	31	92	0	100	25	20	10	44	1.83
65713439--65713562	33	3.6	32	72	23	108	62	0	1	36	1.05
65713454--65713554	11	9.5	11	68	22	56	61	0	1	36	1.07
65713445--65713529	40	2.1	40	93	4	145	67	0	1	31	0.99
65713466--65713510	15	3.1	15	78	15	58	71	0	0	28	0.87
65713485--65713562	32	2.4	32	95	2	138	64	0	1	34	1.02
65714508--65714582	38	2.0	38	89	0	114	53	12	6	28	1.63
65724851--65724960	31	3.6	32	72	13	86	23	8	15	52	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65734279--65734380	41	2.5	42	84	6	129	31	24	17	26	1.97
65736459--65736485	10	2.7	10	100	0	54	29	0	0	70	0.88
65736863--65736921	30	2.0	30	86	6	84	49	15	6	28	1.70
65740941--65740992	23	2.3	22	93	3	86	46	0	1	51	1.12
65745386--65745471	45	1.9	45	80	4	102	48	8	13	29	1.71
65761724--65761787	31	2.1	31	84	0	83	17	14	15	53	1.74
65764857--65764882	2	13.0	2	100	0	52	50	0	0	50	1.00
65765414--65765444	3	10.3	3	100	0	62	32	0	0	67	0.91
65770729--65770777	25	1.9	25	84	12	64	36	12	4	46	1.60
65783117--65783465	177	2.0	174	94	1	617	40	18	16	24	1.90
65786117--65786205	30	2.9	32	77	12	98	41	5	7	44	1.57
65786087--65786205	31	3.9	30	74	10	91	42	6	6	44	1.57
65795100--65795489	195	2.0	192	91	1	636	42	18	15	23	1.88
65796484--65796544	31	2.0	31	83	0	77	40	13	11	34	1.80
65804457--65804494	20	1.9	20	94	0	67	31	0	18	50	1.47
65805540--65805598	5	11.4	5	81	13	57	15	6	0	77	0.96
65808763--65808805	21	2.0	20	86	13	59	41	0	0	58	0.98
65811544--65811595	25	2.1	25	92	0	86	65	15	3	15	1.41
65815687--65815722	11	3.2	12	88	11	58	47	0	52	0	1.00
65816677--65816997	40	7.9	41	79	9	361	22	20	25	31	1.98
65816676--65817009	82	4.1	82	95	1	582	21	20	25	32	1.98
65817019--65817294	50	5.6	49	71	6	182	25	21	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65817001--65817300	100	3.0	99	79	8	376	25	21	22	30	1.99
65817444--65818201	132	5.7	132	96	0	1311	29	26	16	27	1.97
65818853--65818939	44	2.0	45	97	2	167	27	28	16	27	1.97
65831138--65831173	11	3.2	12	88	11	58	47	0	52	0	1.00
65833330--65833402	23	3.2	23	88	7	121	31	24	20	23	1.98
65833489--65833517	8	3.6	8	100	0	58	34	27	13	24	1.93
65833636--65833674	18	2.2	17	86	13	53	46	20	0	33	1.51
65835480--65835520	21	2.0	21	85	0	55	19	7	2	70	1.22
65848734--65848772	18	2.2	18	86	4	53	48	2	0	48	1.15
65860815--65860845	16	1.9	16	93	0	53	35	3	12	48	1.58
65862098--65862137	19	2.0	20	85	4	55	27	0	2	70	1.01
65863264--65863310	19	2.5	19	92	0	76	19	14	2	63	1.40
65869659--65869729	31	2.3	30	83	9	81	35	5	12	46	1.66
65871849--65871880	12	2.7	12	90	0	55	59	0	9	31	1.29
65872173--65872213	22	2.0	20	85	9	55	48	2	12	36	1.54
65875504--65875580	29	2.5	30	81	8	93	31	5	12	50	1.63
65880639--65880681	24	1.9	21	86	13	59	37	0	2	60	1.10
65880779--65880806	9	3.1	9	100	0	56	57	10	0	32	1.33
65880749--65880967	77	3.1	68	86	12	325	46	8	4	40	1.55
65880847--65880883	9	4.1	9	100	0	74	56	10	0	32	1.34
65880956--65880997	16	2.6	16	92	0	66	42	7	2	47	1.43
65880971--65881031	22	2.8	22	80	9	63	45	1	1	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65880851--65880989	66	2.2	65	81	14	184	48	8	2	40	1.49
65883581--65883715	42	3.2	42	88	3	191	25	22	4	47	1.70
65886702--65886727	11	2.4	11	100	0	52	50	7	7	34	1.60
65888133--65888205	29	2.5	30	84	2	94	41	15	10	32	1.82
65897853--65897924	35	2.1	34	84	10	92	48	0	0	51	1.00
65900459--65900495	18	2.0	19	89	5	58	24	5	5	64	1.36
65900728--65900763	18	2.0	18	88	0	54	33	13	13	38	1.85
65904050--65904078	3	9.7	3	100	0	58	34	0	0	65	0.93
65911778--65911804	2	13.5	2	100	0	54	51	0	0	48	1.00
65923152--65923212	32	1.9	32	100	0	122	32	19	11	36	1.88
65938797--65938826	2	14.5	2	93	6	51	50	3	0	46	1.18
65938956--65939205	81	3.1	81	88	0	374	34	16	21	27	1.95
65938900--65939205	162	1.9	164	86	5	438	34	17	21	26	1.95
65948278--65948318	19	2.2	18	86	4	55	63	0	0	36	0.95
65948298--65948355	29	2.0	29	86	0	80	56	8	3	31	1.46
65948613--65948927	109	2.9	109	91	3	521	30	15	14	39	1.87
65950254--65950295	14	3.0	14	80	13	59	30	7	26	35	1.83
65953305--65953329	7	3.6	7	100	0	50	12	0	60	28	1.32
65955699--65955773	25	3.0	25	82	3	89	21	28	17	33	1.96
65955707--65955790	25	3.4	25	86	0	114	21	27	19	32	1.97
65956722--65956764	17	2.5	17	100	0	86	13	20	37	27	1.91
65958291--65958333	21	2.0	21	86	4	59	72	2	11	13	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65961713--65961818	54	2.0	54	96	0	194	40	16	8	34	1.78
65961812--65961868	29	2.0	29	96	0	105	35	15	10	38	1.82
65970535--65970571	17	2.2	17	100	0	74	59	10	13	16	1.61
65971552--65971610	20	2.9	22	75	10	54	67	1	0	30	1.00
65971698--65971761	21	3.0	20	84	13	76	21	7	3	67	1.31
65971920--65972023	50	2.1	49	89	1	154	43	6	11	38	1.67
65972651--65972702	22	2.3	23	74	9	54	57	3	1	36	1.28
65972663--65972733	35	1.9	38	81	13	87	56	7	1	35	1.35
65975991--65976027	9	4.1	9	89	0	56	48	8	13	29	1.71
65976063--65976105	20	2.1	21	86	4	61	25	30	0	44	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216