genome.fa.s15.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  179  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55918269--55918358	28	2.8	32	71	23	82	28	25	22	23	1.99
55918290--55918347	28	2.1	27	90	3	89	25	25	24	24	2.00
55918683--55918902	27	8.2	27	81	3	228	22	14	19	44	1.86
55920706--55920852	46	3.2	46	86	0	186	28	17	23	29	1.97
55921557--55921594	20	1.9	20	88	0	58	55	21	0	23	1.44
55924032--55924063	10	3.0	11	90	9	57	43	0	18	37	1.51
55924575--55924666	24	3.8	24	70	8	78	15	26	22	35	1.94
55948035--55948243	33	5.7	34	72	21	140	31	25	20	22	1.98
55948036--55948244	76	2.8	75	92	0	328	31	26	20	22	1.98
55948147--55948345	101	2.0	101	89	2	310	32	25	20	21	1.97
55950059--55950106	24	2.0	24	83	0	60	14	31	22	31	1.94
55951746--55951818	26	2.8	26	80	10	87	16	21	23	38	1.93
55954009--55954037	14	2.1	14	100	0	58	44	34	0	20	1.52
55955166--55955803	27	23.6	27	83	7	742	41	17	20	20	1.90
55956021--55956116	26	3.7	27	75	6	108	16	20	23	38	1.93
55956224--55956311	30	2.9	30	84	0	113	21	27	23	27	1.99
55957423--55957470	25	1.9	25	87	8	71	41	20	18	18	1.90
55964449--55964500	25	2.1	24	86	10	70	40	25	19	15	1.90
55965286--55965338	25	2.1	25	100	0	106	47	20	0	32	1.51
55978584--55978663	27	3.0	27	84	0	106	18	28	22	30	1.98
55988917--55988979	19	3.3	19	70	18	58	60	3	0	36	1.13
55988886--55988998	39	2.9	41	77	15	121	59	2	0	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55995452--55995496	18	2.5	18	85	7	65	20	35	2	42	1.64
55996625--55996660	18	2.0	18	100	0	72	22	5	27	44	1.75
56005217--56005258	21	2.0	21	90	4	66	52	30	2	14	1.54
56006450--56006726	29	9.9	28	71	8	86	36	19	17	25	1.94
56006462--56006525	29	2.2	29	91	0	101	35	21	21	20	1.96
56006638--56006726	26	3.4	26	84	0	115	37	21	17	23	1.94
56017315--56017353	14	2.8	14	88	7	53	38	20	15	25	1.92
56017790--56017827	16	2.3	17	86	4	51	63	2	0	34	1.09
56017792--56017833	19	2.0	21	86	13	61	64	2	0	33	1.07
56021466--56021495	14	2.1	14	93	0	51	0	16	0	83	0.65
56024917--56024946	9	3.2	9	95	4	51	60	0	3	36	1.14
56026194--56026358	9	17.3	9	68	23	72	25	4	16	53	1.61
56026953--56026996	20	2.2	20	84	4	54	25	2	15	56	1.51
56028831--56028890	29	2.1	29	93	0	102	28	1	16	53	1.53
56028838--56028898	16	4.0	16	79	12	74	27	1	16	54	1.52
56031048--56031095	25	1.9	25	86	0	69	20	22	18	37	1.94
56031050--56031117	25	2.7	25	77	6	66	22	23	20	33	1.97
56034755--56034810	24	2.3	24	81	0	67	23	42	10	23	1.85
56038922--56038971	21	2.4	21	82	0	64	20	18	18	44	1.88
56038952--56039027	21	3.6	21	70	12	57	22	22	11	43	1.85
56038940--56039055	42	2.8	42	79	7	128	18	20	15	44	1.86
56046640--56046772	42	3.2	42	83	0	158	18	18	17	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56046640--56046692	21	2.5	21	75	0	52	16	16	18	47	1.83
56046694--56046751	21	2.7	22	71	7	66	22	18	15	43	1.88
56048276--56048303	9	3.1	9	100	0	56	64	0	0	35	0.94
56049449--56049525	31	2.5	31	83	6	86	58	9	3	28	1.47
56058096--56058126	16	2.0	16	93	6	55	6	19	3	70	1.22
56062978--56063014	7	5.1	7	87	6	56	24	45	0	29	1.53
56062975--56063033	14	3.9	16	85	12	72	18	45	0	35	1.50
56069674--56069711	20	1.9	20	89	10	60	34	0	5	60	1.19
56073587--56073627	15	2.6	17	81	18	61	19	43	0	36	1.51
56073586--56073640	17	3.2	17	73	14	51	16	43	0	40	1.48
56091644--56091677	16	2.1	16	94	0	59	11	35	0	52	1.38
56092275--56092314	18	2.2	18	90	0	62	22	5	15	57	1.57
56092570--56092602	11	3.0	11	90	0	57	30	9	9	51	1.64
56093782--56093848	34	1.9	35	87	3	100	46	11	8	32	1.72
56099664--56099762	49	2.0	49	100	0	198	24	26	10	39	1.87
56103301--56103387	42	2.1	42	95	0	156	48	18	0	33	1.48
56104487--56104529	20	2.1	21	91	4	70	37	0	0	62	0.95
56108040--56108091	24	2.2	24	86	13	72	38	0	3	57	1.17
56108055--56108095	14	3.0	14	76	16	50	39	0	2	58	1.11
56112156--56112208	21	2.7	19	82	5	61	28	37	9	24	1.86
56114321--56114521	21	9.6	21	74	4	181	46	16	20	15	1.84
56114324--56114518	42	4.6	42	85	2	257	46	16	20	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56117829--56118111	147	1.9	147	92	0	476	33	8	18	38	1.82
56127857--56127882	2	13.0	2	100	0	52	50	0	0	50	1.00
56137337--56137386	2	25.0	2	95	0	91	50	48	0	2	1.12
56138025--56138096	20	3.6	20	70	7	56	36	16	27	19	1.93
56138012--56138118	40	2.7	40	76	2	108	38	15	28	17	1.91
56144004--56144089	45	1.9	45	83	4	111	26	24	9	39	1.85
56154819--56154955	72	1.9	72	86	0	193	40	13	19	27	1.89
56156081--56156369	144	2.0	144	97	0	551	20	21	28	29	1.98
56156085--56156403	144	2.2	144	92	2	534	20	21	29	28	1.98
56165259--56165320	15	4.1	17	71	25	59	38	0	0	61	0.96
56165268--56165317	26	1.9	26	88	8	75	34	0	0	66	0.92
56168600--56168688	45	2.0	45	93	0	151	33	22	17	25	1.96
56168690--56168885	51	3.9	50	82	4	232	31	28	16	23	1.96
56168795--56168827	14	2.5	13	90	9	50	39	27	9	24	1.85
56168695--56168881	101	1.8	101	90	3	304	32	28	16	22	1.96
56170159--56170185	3	9.0	3	100	0	54	66	0	0	33	0.92
56171415--56171463	23	2.1	24	84	3	64	44	2	8	44	1.45
56171982--56172030	19	2.5	19	80	9	55	55	6	0	38	1.25
56171982--56172020	18	2.1	19	85	4	53	56	5	0	38	1.22
56180891--56181302	204	2.0	201	82	3	506	23	19	13	43	1.86
56181744--56181787	13	3.5	12	79	11	52	27	2	31	38	1.69
56189665--56189716	24	2.2	24	86	6	70	34	1	7	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56191724--56191767	1	44.0	1	81	0	52	90	9	0	0	0.44
56191726--56191767	18	2.3	18	87	0	66	90	9	0	0	0.45
56197918--56197978	18	3.4	17	84	8	68	37	22	22	16	1.93
56204174--56204221	18	2.6	20	78	18	59	35	22	22	18	1.96
56205165--56205222	29	2.0	29	96	0	107	37	8	17	36	1.80
56206252--56206332	31	2.7	29	85	11	101	44	11	9	34	1.73
56211483--56211642	50	3.1	50	81	4	151	40	8	10	40	1.70
56211539--56211663	50	2.5	50	83	3	137	44	8	5	41	1.57
56211738--56211767	14	2.1	14	93	0	51	56	0	0	43	0.99
56212174--56212221	14	3.3	14	78	16	53	47	0	2	50	1.12
56214945--56215072	27	4.7	27	75	3	78	26	23	13	36	1.92
56218811--56218838	6	4.7	6	100	0	56	0	17	14	67	1.22
56219174--56219235	29	2.1	28	85	5	79	24	14	16	45	1.84
56220675--56220800	63	2.0	63	85	1	171	42	18	10	29	1.83
56222383--56222407	5	5.0	5	100	0	50	60	0	0	40	0.97
56227265--56227305	14	2.9	14	80	20	50	14	19	0	65	1.26
56229167--56229208	19	2.2	19	83	8	50	14	4	0	80	0.86
56229161--56229211	25	2.0	25	85	7	68	13	3	1	80	0.94
56229181--56229211	14	2.1	15	94	5	55	16	0	0	83	0.64
56229465--56229506	20	2.1	20	95	0	75	11	9	11	66	1.44
56233745--56233998	45	5.6	45	84	3	325	20	18	16	44	1.86
56242164--56242270	42	2.5	42	86	3	144	23	23	28	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56244909--56244972	27	2.4	27	89	2	94	51	7	4	35	1.52
56247111--56247234	45	2.7	46	80	2	135	20	16	14	48	1.81
56248067--56248101	17	2.1	17	100	0	70	48	17	0	34	1.47
56256925--56257064	69	2.0	69	94	2	246	36	17	12	32	1.88
56258552--56258589	15	2.5	15	84	16	51	21	2	2	73	1.07
56260039--56260300	128	2.0	129	97	0	490	33	6	25	34	1.81
56263668--56263697	14	2.1	14	100	0	60	80	0	0	20	0.72
56296943--56296996	25	2.2	25	89	0	81	16	29	38	14	1.89
56298295--56298339	25	1.9	22	86	13	63	37	28	13	20	1.90
56298296--56298345	23	2.2	23	82	13	59	38	30	12	20	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216