genome.fa.s15.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  45  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12896328--12896597	86	3.2	86	83	7	347	27	21	20	31	1.98
12897187--12897299	25	4.5	25	72	8	86	26	22	19	31	1.97
12902519--12902583	32	2.0	32	100	0	130	30	20	9	40	1.83
12915400--12915442	17	2.5	18	85	14	56	0	6	23	69	1.12
12916140--12916403	50	5.3	50	73	8	268	21	19	24	33	1.97
12916093--12916411	100	3.2	100	90	1	505	21	21	24	33	1.97
12916724--12916938	43	4.9	44	66	10	143	23	27	23	25	2.00
12916694--12917267	88	6.6	87	83	1	596	24	23	22	28	1.99
12916718--12916927	44	4.8	45	67	8	135	23	25	25	25	2.00
12920358--12920925	285	2.0	285	98	0	1100	23	26	15	34	1.95
12930085--12930157	22	3.2	22	69	13	58	27	15	1	56	1.48
12941057--12941110	26	2.1	26	100	0	108	38	14	11	35	1.82
12946217--12946247	5	6.0	5	96	3	53	41	0	0	58	0.98
12947242--12947286	23	2.0	23	86	8	65	20	11	2	66	1.33
12947696--12947732	17	2.2	17	100	0	74	51	0	0	48	1.00
12952197--12952239	21	2.0	21	95	0	77	13	30	18	37	1.90
12956117--12956156	20	2.0	20	100	0	80	35	10	10	45	1.71
12957535--12957608	32	2.5	29	89	10	107	50	17	2	29	1.60
12959008--12959068	27	2.3	27	82	0	77	49	8	4	37	1.54
12961006--12961045	18	2.2	18	86	8	55	70	0	27	2	1.01
12962694--12962751	29	2.0	29	96	0	107	36	13	12	37	1.82
12963467--12963513	22	2.1	23	88	4	69	27	21	8	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12964031--12964058	14	2.0	14	100	0	56	28	21	0	50	1.49
12969169--12969220	18	2.9	18	88	0	77	34	13	11	40	1.81
12972768--12972834	26	2.5	26	79	15	75	46	11	2	38	1.56
12977580--12977654	30	2.5	28	81	14	87	45	1	2	50	1.24
12989309--12989353	22	2.0	22	86	0	63	57	2	2	37	1.23
12989325--12989401	38	2.1	38	86	9	108	58	3	5	32	1.38
12990505--12990570	30	2.2	30	80	0	78	10	6	39	43	1.64
12990629--12990672	22	2.0	22	90	0	70	11	20	25	43	1.85
12990744--12990906	43	3.8	43	89	0	236	29	31	16	22	1.96
12994299--12994335	14	2.6	14	91	0	56	35	40	0	24	1.55
12994291--12994367	21	3.7	21	75	3	66	37	40	0	22	1.54
12995434--12995626	41	4.7	41	88	2	246	32	26	21	18	1.97
12995664--12995798	40	3.4	38	78	8	126	20	20	20	37	1.94
12995683--12995799	40	2.9	41	82	3	141	23	21	19	35	1.96
13000397--13000431	18	1.9	18	88	11	54	40	11	22	25	1.88
13005565--13005594	15	1.9	16	93	6	53	40	6	0	53	1.27
13010033--13010190	23	7.1	22	68	5	93	34	30	4	30	1.77
13010027--13010190	45	3.6	45	86	1	213	34	30	4	30	1.77
13010059--13010170	22	5.0	23	72	4	93	35	32	4	27	1.77
13014755--13015038	47	6.1	47	92	1	455	32	9	29	28	1.88
13015157--13015235	37	2.1	37	88	4	115	25	18	30	25	1.98
13016980--13017065	38	2.2	38	83	10	102	67	2	19	10	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13021300--13021414	22	5.1	22	76	4	122	38	31	3	26	1.73
13021251--13021414	45	3.6	45	90	1	231	37	31	2	29	1.70
13021290--13021414	23	5.5	22	75	4	115	39	31	3	26	1.72
13021290--13021446	45	3.5	44	84	4	138	40	30	3	25	1.71
13023279--13023381	44	2.4	42	80	10	118	26	16	27	30	1.97
13023285--13023431	42	3.4	43	75	15	126	25	19	26	29	1.98
13023285--13023443	43	3.7	42	72	13	137	25	18	27	28	1.98
13025387--13025502	34	3.3	35	80	11	132	21	28	31	18	1.97
13028848--13028886	20	2.0	20	84	0	51	33	30	23	12	1.92
13036360--13036410	17	3.1	16	81	15	52	43	1	0	54	1.11
13036374--13036410	17	2.2	17	90	9	58	43	0	0	56	0.99
13039153--13039194	22	1.9	22	90	0	66	57	14	19	9	1.64
13041015--13041065	20	2.4	21	81	15	61	60	1	1	35	1.19
13043139--13043355	4	54.2	4	97	0	362	24	3	24	47	1.68
13043411--13043453	22	2.0	22	100	0	86	39	13	18	27	1.89
13046533--13046582	25	2.0	25	84	7	66	28	8	20	44	1.79
13046560--13046725	51	3.3	51	83	0	208	21	16	25	36	1.94
13046586--13046676	25	3.6	25	76	2	101	23	18	24	34	1.96
13046549--13046700	25	6.0	24	71	7	90	21	15	25	37	1.92
13046687--13046749	25	2.5	25	78	0	72	20	19	26	33	1.96
13049051--13049086	18	2.1	18	89	5	56	52	0	0	47	1.00
13054853--13054877	6	4.2	6	100	0	50	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13055056--13055108	15	3.2	16	76	19	56	54	1	0	43	1.11
13066908--13066934	3	9.0	3	100	0	54	33	0	0	66	0.92
13068694--13068728	16	2.2	16	89	0	52	20	20	17	42	1.89
13072415--13072449	17	2.1	17	94	0	61	25	8	28	37	1.85
13094230--13094260	14	2.2	14	94	0	53	61	22	0	16	1.34
13096135--13096171	15	2.6	15	91	8	60	24	10	0	64	1.25
13097352--13097754	117	3.4	117	78	5	429	27	22	21	28	1.99
13097819--13098091	144	1.9	144	82	4	345	28	21	19	30	1.97
13109174--13109288	42	2.7	42	76	18	112	27	26	20	25	1.99
13113302--13113333	13	2.5	13	94	0	55	28	34	31	6	1.82
13114329--13114384	21	2.8	19	89	10	94	37	10	16	35	1.83
13114329--13114407	19	3.7	22	80	14	78	36	8	16	37	1.80
13114611--13114655	23	2.0	23	81	0	54	22	0	15	62	1.33
13114810--13114859	23	2.2	23	82	7	57	36	2	0	62	1.07
13115120--13115158	21	1.9	20	89	5	60	33	7	2	56	1.41
13120321--13120367	20	2.4	19	89	7	67	82	14	2	0	0.75
13120322--13120373	9	5.4	9	80	11	50	80	15	1	1	0.88
13120321--13120359	10	3.8	10	86	6	60	82	17	0	0	0.68
13121672--13122069	44	9.7	43	79	16	438	24	18	27	29	1.98
13121672--13122065	78	4.9	78	78	16	432	24	19	27	29	1.98
13121742--13122065	122	2.7	122	92	0	551	23	18	28	29	1.98
13121945--13122306	44	8.2	44	75	7	200	28	18	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13121942--13122279	88	3.8	88	69	9	242	28	18	24	28	1.98
13121994--13122377	176	2.2	176	90	4	614	29	19	24	26	1.98
13123054--13123111	19	2.7	22	84	10	68	36	8	17	37	1.80
13123313--13123357	23	2.0	23	86	0	63	24	0	13	62	1.31
13126318--13126363	22	2.0	23	84	12	60	39	0	21	39	1.54
13129375--13129418	15	3.0	15	83	12	56	0	25	2	72	0.96
13132450--13132535	25	3.5	24	76	12	84	24	23	19	32	1.98
13138787--13138846	25	2.4	25	85	0	93	20	31	20	28	1.97
13144656--13144727	36	2.0	36	91	5	119	30	20	8	40	1.82
13146988--13147020	15	2.2	15	89	10	50	21	0	0	78	0.75
13147806--13147856	22	2.3	22	82	0	66	21	5	7	64	1.41
13147778--13147856	11	7.2	11	77	0	59	15	7	11	65	1.45
13148877--13148919	8	5.5	8	86	5	61	83	0	0	16	0.64
13148877--13148919	15	2.8	15	82	3	59	83	0	0	16	0.64
13151247--13151310	29	2.2	30	83	13	80	53	6	1	39	1.36
13153113--13153179	27	2.4	29	78	12	77	67	0	4	28	1.10
13155693--13155726	13	2.4	14	90	9	52	20	0	0	79	0.73
13156329--13156362	9	3.8	9	88	0	50	47	0	2	50	1.16
13158650--13158690	20	2.0	20	90	0	64	9	19	19	51	1.74
13163018--13163068	26	2.0	24	85	7	66	27	0	3	68	1.07
13162920--13163070	9	16.0	9	67	19	60	33	1	3	61	1.23
13173909--13173949	17	2.3	19	76	16	52	36	14	14	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13179803--13179844	21	2.0	21	85	0	57	38	7	9	45	1.64
13181490--13181943	46	10.6	45	80	14	543	33	14	21	29	1.94
13181490--13181943	82	5.3	86	81	13	436	33	14	21	29	1.94
13181490--13181943	128	3.6	127	83	11	606	33	14	21	29	1.94
13182919--13182972	21	2.7	19	77	13	56	42	14	11	31	1.81
13188062--13188110	21	2.3	21	78	0	53	44	14	22	18	1.85
13188093--13188191	42	2.4	42	84	0	117	42	17	22	18	1.89
13196549--13196612	28	2.2	30	80	5	78	56	1	6	35	1.34
13211129--13211162	12	2.8	12	81	0	50	29	5	2	61	1.34
13211198--13211235	19	2.0	20	89	5	60	36	2	5	55	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216