genome.fa.s15.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  14  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4413818--4413855	20	1.9	20	100	0	76	55	28	0	15	1.41
4419268--4419294	6	4.5	6	100	0	54	14	66	18	0	1.25
4432686--4432745	18	3.2	19	79	11	61	55	6	1	36	1.36
4437738--4437763	2	13.0	2	100	0	52	50	0	0	50	1.00
4441394--4441570	64	2.8	64	87	10	249	31	8	17	42	1.79
4441689--4441929	41	5.9	41	89	2	306	19	19	27	33	1.96
4442597--4442631	15	2.3	15	90	9	54	25	0	22	51	1.48
4448328--4448475	64	2.3	64	91	4	237	31	8	18	41	1.81
4448623--4448904	41	6.9	41	91	2	397	20	19	27	32	1.97
4449572--4449606	15	2.3	15	90	9	54	25	0	22	51	1.48
4456592--4456887	134	2.2	134	80	7	325	40	8	9	41	1.68
4457006--4457262	137	1.9	134	80	7	295	38	12	12	36	1.80
4462898--4462958	30	2.0	30	87	6	88	16	4	50	27	1.65
4462930--4463025	42	2.3	42	90	0	156	13	8	54	23	1.66
4462980--4463064	33	2.6	33	86	0	107	11	9	55	23	1.65
4463042--4463172	51	2.5	54	87	7	205	14	10	49	25	1.75
4463039--4463188	51	2.9	50	77	10	158	15	10	49	24	1.76
4464403--4464537	67	2.0	65	84	4	171	28	15	12	42	1.84
4484211--4484276	26	2.6	26	83	4	82	43	6	3	46	1.43
4487702--4487745	22	2.0	23	86	8	65	29	6	2	61	1.34
4491018--4491048	3	10.3	3	100	0	62	67	0	0	32	0.91
4492176--4492274	51	1.9	51	85	0	135	37	3	18	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4497851--4497882	3	10.7	3	93	0	55	34	0	0	65	0.93
4508773--4508821	22	2.1	22	85	7	62	57	10	6	26	1.55
4515713--4515757	18	2.5	19	82	10	58	40	0	0	60	0.97
4515708--4515767	28	2.2	27	85	5	77	36	0	0	63	0.95
4515712--4515766	10	5.7	10	75	14	53	38	0	0	61	0.96
4518170--4518240	7	10.4	7	78	14	51	30	1	0	67	0.99
4518177--4518238	22	3.0	21	83	6	81	33	1	0	64	1.03
4521768--4521815	24	2.0	24	88	8	71	56	2	10	31	1.45
4521985--4522052	26	2.8	24	78	12	66	51	4	10	33	1.56
4522921--4522964	13	3.2	13	80	6	52	86	0	9	4	0.70
4523925--4524692	44	17.4	45	75	6	622	29	26	16	28	1.97
4524009--4524692	132	5.2	132	94	0	1181	28	25	16	28	1.97
4536472--4536519	24	2.0	24	88	8	71	56	2	10	31	1.45
4536689--4536758	27	2.7	25	79	12	70	52	4	10	32	1.54
4539764--4539826	10	6.6	10	75	8	60	60	0	6	33	1.22
4539765--4539838	38	2.0	37	89	7	114	63	0	6	29	1.20
4539826--4539892	21	3.0	24	74	10	61	68	2	8	19	1.29
4540303--4540329	7	3.9	7	100	0	54	14	0	0	85	0.61
4546656--4546748	18	5.2	18	82	0	96	33	12	22	31	1.92
4546656--4546748	36	2.6	36	85	0	132	33	12	22	31	1.92
4548878--4548905	5	5.6	5	100	0	56	60	0	39	0	0.97
4551040--4551396	179	2.0	179	93	0	606	42	17	14	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4552461--4552505	18	2.5	18	85	7	56	35	13	22	28	1.92
4552481--4552510	15	2.0	15	93	0	51	26	16	23	33	1.96
4552474--4552508	18	1.9	18	100	0	70	28	14	22	34	1.93
4553843--4553879	18	2.1	18	100	0	74	43	21	8	27	1.80
4555261--4555428	84	2.0	84	82	4	205	34	10	27	27	1.89
4556427--4556455	14	2.1	14	100	0	58	65	13	0	20	1.26
4562912--4562955	22	2.0	22	86	4	63	38	0	0	61	0.96
4563179--4563222	19	2.4	19	81	7	56	68	6	0	25	1.14
4564417--4564447	9	3.4	9	95	0	53	25	0	0	74	0.82
4575748--4575960	45	5.2	39	76	17	200	19	19	21	39	1.93
4575775--4575962	45	4.3	45	80	11	221	19	19	21	39	1.92
4575758--4575960	82	2.4	83	86	5	284	19	19	22	38	1.93
4577433--4577480	22	2.2	21	89	7	78	18	18	14	47	1.82
4577439--4577486	22	2.2	22	92	0	78	25	22	14	37	1.92
4578516--4578586	33	2.2	33	92	0	115	35	40	8	15	1.78
4578896--4578937	15	2.9	15	86	10	52	57	0	42	0	0.99
4583933--4583966	17	2.0	17	100	0	68	29	11	5	52	1.61
4585732--4585764	15	2.3	15	89	5	50	27	0	3	69	1.03
4588579--4588607	3	9.7	3	100	0	58	31	0	0	68	0.89
4601125--4601265	69	2.1	67	78	12	150	29	7	9	53	1.60
4601724--4601788	31	2.1	31	88	0	94	46	9	9	35	1.68
4602035--4602088	10	5.2	11	74	19	53	64	5	0	29	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4602037--4602099	19	3.1	21	86	11	80	63	6	0	30	1.19
4602045--4602099	19	2.8	20	91	5	87	65	5	0	29	1.15
4607673--4607719	22	2.1	22	81	18	53	27	0	12	59	1.34
4612618--4612676	26	2.2	28	84	6	77	52	0	1	45	1.10
4612647--4612697	21	2.7	18	77	16	57	52	0	3	43	1.19
4615276--4615311	2	18.0	2	100	0	72	0	50	0	50	1.00
4615311--4615336	2	13.0	2	100	0	52	50	50	0	0	1.00
4622398--4622458	31	2.0	31	86	0	86	36	14	6	42	1.72
4627379--4627425	18	2.6	18	100	0	94	34	23	17	25	1.96
4627764--4627830	9	7.4	9	86	0	80	26	8	22	41	1.83
4629738--4629813	27	2.9	26	79	11	82	64	1	1	32	1.10
4632856--4632880	11	2.3	11	100	0	50	56	0	0	44	0.99
4641645--4641799	75	2.1	75	100	0	310	36	29	5	28	1.79
4643027--4643078	24	2.2	24	82	0	59	50	7	5	36	1.55
4644890--4644944	28	2.0	28	81	0	65	50	7	1	40	1.40
4645605--4645667	13	4.8	13	74	0	54	34	4	20	39	1.74
4645915--4645965	19	2.5	20	84	6	68	49	1	1	47	1.24
4645937--4645990	21	2.6	21	82	8	58	46	3	3	46	1.38
4647776--4648021	125	2.0	125	94	0	429	29	20	15	34	1.94
4649416--4649770	176	2.0	176	97	0	665	29	19	16	34	1.94
4659675--4659731	29	2.0	28	80	16	64	54	3	10	31	1.51
4661976--4662029	11	4.7	11	84	8	63	38	1	1	57	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4661961--4662028	11	6.4	11	77	17	54	39	1	1	57	1.17
4667346--4667381	2	18.0	2	94	0	63	0	50	2	47	1.15
4668081--4668112	3	10.7	3	100	0	64	0	34	0	65	0.93
4671178--4671209	15	2.1	15	94	0	55	15	6	0	78	0.95
4672289--4672339	5	10.0	5	95	4	93	80	0	0	19	0.71
4672727--4672753	10	2.7	10	100	0	54	74	14	0	11	1.08
4673785--4673948	83	2.0	84	91	1	267	28	12	19	39	1.89
4679148--4679316	89	1.9	89	92	0	284	39	14	15	30	1.88
4681286--4681581	147	2.0	148	96	2	551	47	17	6	27	1.72
4685146--4685181	3	12.0	3	100	0	72	33	33	0	33	1.58
4694451--4694490	20	2.0	20	100	0	80	10	35	25	30	1.88
4701191--4701225	17	2.0	18	88	5	54	37	34	8	20	1.83
4707964--4707988	3	8.3	3	100	0	50	32	0	0	68	0.90
4711768--4711837	31	2.3	31	82	0	86	35	10	18	35	1.84
4711937--4712012	37	2.1	37	100	0	152	39	9	26	25	1.85
4718455--4718497	22	2.0	22	81	9	52	27	11	4	55	1.55
4722720--4722777	29	2.0	29	83	6	73	44	10	10	34	1.73
4723019--4723052	16	2.1	16	88	0	50	14	5	35	44	1.70
4728602--4728627	5	5.2	5	100	0	52	42	19	19	19	1.90
4729371--4729430	30	2.0	30	83	3	75	41	0	38	20	1.52
4729646--4729682	9	4.1	9	92	0	65	29	10	13	45	1.77
4730712--4730769	25	2.4	25	80	13	59	34	5	5	55	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4732210--4732264	28	2.0	28	82	7	67	52	9	3	34	1.50
4732423--4732475	26	2.0	27	88	3	81	47	11	13	28	1.77
4732855--4732887	17	2.0	17	88	5	50	42	18	15	24	1.88
4733472--4733567	50	1.9	50	86	0	138	23	26	19	30	1.98
4733742--4733785	20	2.2	20	92	8	72	27	0	0	72	0.85
4733749--4733801	21	2.5	20	84	9	61	32	0	5	62	1.19
4744458--4744492	17	2.1	17	88	0	52	51	17	5	25	1.67
4747625--4747649	11	2.3	11	100	0	50	56	0	0	44	0.99
4749971--4750013	21	2.0	21	86	0	59	27	2	0	69	1.00
4751056--4751096	21	2.0	21	90	0	64	58	0	2	39	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216