genome.fa.s15.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D02
Parameters: 2 7 7 80 10 50 1000
Length:  67659327

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   

This is table  133  of  216  ( 25871 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42253599--42253815	79	2.7	80	89	3	330	54	5	0	39	1.29
42253591--42253826	10	23.5	10	67	17	96	55	5	0	38	1.28
42253809--42253841	16	2.1	16	88	11	50	69	0	0	30	0.88
42254414--42254461	19	2.5	19	75	0	51	33	0	8	58	1.28
42256758--42256787	13	2.3	13	100	0	60	36	13	10	40	1.78
42257634--42257662	15	1.9	15	100	0	58	55	3	0	41	1.17
42257852--42257899	3	16.3	3	82	4	62	60	2	4	33	1.27
42257852--42257898	17	2.7	17	83	3	58	59	2	4	34	1.29
42258867--42259124	50	5.1	51	67	13	174	26	25	20	27	1.99
42258892--42259161	50	5.4	50	67	11	165	24	24	20	30	1.98
42258841--42259156	101	3.1	101	93	0	535	25	24	19	30	1.98
42258791--42259156	202	1.8	193	87	6	545	25	24	19	30	1.98
42261061--42261246	40	4.6	39	86	5	205	25	20	26	26	1.99
42261114--42261269	80	2.0	79	82	8	192	27	19	25	26	1.99
42265158--42265184	12	2.2	12	100	0	54	33	40	18	7	1.78
42267305--42267357	23	2.3	22	78	15	54	60	0	15	24	1.35
42267337--42267392	27	2.1	26	83	3	67	60	8	14	16	1.57
42274945--42275003	3	20.0	3	80	3	66	62	3	3	30	1.28
42274945--42274991	17	2.7	17	83	3	58	59	2	4	34	1.29
42281548--42281643	10	10.9	9	64	20	51	36	2	1	60	1.15
42281544--42281580	15	2.4	16	82	17	51	35	0	0	64	0.94
42281613--42281642	15	1.9	16	93	6	53	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42284726--42284802	32	2.4	32	80	0	91	44	6	24	24	1.77
42289231--42289307	32	2.4	32	80	0	91	44	6	24	24	1.77
42294245--42294284	20	2.0	21	85	5	55	30	0	27	42	1.56
42298682--42298760	40	2.0	40	94	0	140	27	15	20	36	1.92
42308138--42308187	20	2.5	20	83	6	57	32	20	12	36	1.89
42310706--42310747	18	2.3	18	91	0	66	45	11	9	33	1.73
42320738--42320786	24	2.0	24	100	0	98	28	26	4	40	1.74
42329153--42329197	20	2.3	19	84	7	54	24	33	11	31	1.90
42331329--42331412	25	3.4	25	72	0	69	36	19	23	20	1.95
42331429--42331482	23	2.2	25	77	12	67	33	20	27	18	1.96
42331435--42331482	23	2.1	23	88	0	69	33	18	29	18	1.95
42331475--42331524	26	1.9	26	91	0	82	40	24	18	18	1.91
42335067--42335151	29	3.0	26	73	20	73	58	3	2	35	1.28
42335076--42335154	29	2.8	28	77	14	81	60	2	2	34	1.23
42335239--42335274	17	2.1	18	89	5	56	11	8	13	66	1.44
42338417--42338714	140	2.1	140	87	0	434	31	21	20	26	1.98
42338903--42339025	43	2.9	43	91	0	192	30	34	15	19	1.93
42339029--42339059	16	1.9	16	93	0	53	54	0	0	45	0.99
42339222--42339281	18	3.4	18	64	13	52	40	10	6	43	1.64
42343532--42343659	52	2.4	53	94	1	231	28	14	6	51	1.66
42343897--42343968	34	2.1	35	87	12	105	33	44	0	22	1.53
42343897--42343968	7	10.4	7	77	8	67	33	44	0	22	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42344551--42344825	41	6.7	41	86	0	372	27	24	22	25	2.00
42344863--42344958	39	2.4	39	82	3	102	20	21	19	37	1.94
42379315--42379339	9	2.8	9	100	0	50	24	44	0	32	1.54
42379401--42379441	21	2.0	21	90	0	64	19	29	21	29	1.98
42386049--42386087	21	1.9	20	84	5	51	61	5	17	15	1.51
42386719--42386759	21	2.0	21	85	9	57	31	26	2	39	1.70
42389830--42390264	223	2.0	221	88	2	649	27	17	16	38	1.91
42390036--42390472	123	3.5	124	88	3	583	30	16	14	38	1.88
42394652--42394810	54	2.9	54	84	1	194	31	18	16	33	1.93
42395658--42395702	16	2.8	16	86	10	56	75	0	17	6	1.01
42395915--42395988	33	2.3	33	88	2	105	62	4	28	5	1.36
42401400--42401653	46	5.6	46	91	1	406	35	15	20	29	1.93
42404804--42404916	37	3.1	37	78	13	117	39	2	2	54	1.28
42404947--42404978	12	2.6	13	85	14	50	50	0	0	50	1.00
42409639--42409669	12	2.6	12	94	0	53	22	41	29	6	1.78
42414487--42414531	10	4.7	10	74	20	51	51	0	0	48	1.00
42414484--42414520	17	2.2	17	100	0	74	51	0	0	48	1.00
42414809--42414876	17	4.2	16	71	17	52	54	1	2	41	1.24
42414826--42414890	33	2.0	33	81	6	78	52	1	4	41	1.31
42424602--42424640	19	2.1	19	85	9	53	38	2	10	48	1.51
42425411--42425439	14	2.1	14	100	0	58	65	6	6	20	1.40
42427208--42427314	54	2.0	54	88	0	160	32	18	24	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42430468--42430497	3	10.0	3	100	0	60	33	33	0	33	1.58
42434249--42434336	31	2.8	31	89	0	140	22	35	0	42	1.54
42436813--42436862	14	3.2	15	83	13	57	46	4	0	50	1.20
42442821--42442858	13	2.9	13	81	14	51	52	0	7	39	1.31
42447618--42447684	29	2.3	29	92	5	109	41	7	37	13	1.73
42449138--42449179	21	2.0	21	85	0	57	33	0	23	42	1.55
42449538--42449657	25	4.8	25	76	10	95	17	27	21	33	1.96
42449648--42449705	25	2.3	25	96	0	107	25	31	13	29	1.94
42451233--42451898	332	2.0	332	96	0	1233	38	15	16	28	1.90
42467163--42467219	21	2.7	20	71	10	51	33	10	8	47	1.69
42474146--42474205	21	2.9	21	80	7	68	63	3	5	28	1.31
42474152--42474211	20	2.9	20	72	20	52	65	3	6	25	1.33
42474639--42474691	24	2.2	24	82	0	61	22	30	5	41	1.77
42494649--42494678	12	2.5	12	94	0	51	23	40	30	6	1.80
42497520--42497568	16	3.1	16	90	0	80	59	16	10	14	1.61
42497584--42497869	78	3.7	77	86	5	362	45	13	11	29	1.79
42500177--42500274	30	3.2	30	62	18	74	36	12	13	37	1.82
42500165--42500291	63	2.0	63	100	0	254	36	13	14	36	1.85
42501885--42501917	15	2.1	16	88	5	50	60	0	33	6	1.21
42505715--42505742	6	4.7	6	100	0	56	14	0	0	85	0.59
42506507--42506590	31	2.7	30	73	12	80	41	10	2	45	1.52
42506614--42506672	30	1.9	31	82	3	75	38	15	6	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42509169--42509208	21	1.9	21	89	0	62	60	2	20	17	1.48
42526484--42526523	21	1.9	21	89	0	62	60	0	2	37	1.11
42528057--42528135	40	2.0	40	94	0	140	37	5	15	41	1.69
42537926--42537955	6	5.0	6	100	0	60	83	0	0	16	0.65
42540495--42540529	15	2.3	15	100	0	70	40	25	5	28	1.78
42548128--42548301	87	2.0	87	95	0	312	29	20	21	28	1.98
42550653--42550765	57	2.0	57	82	0	136	39	14	15	30	1.87
42551218--42552069	305	2.8	304	86	4	1198	48	16	14	21	1.81
42553540--42553736	30	6.6	30	85	0	268	38	17	11	32	1.86
42553540--42553736	60	3.3	60	91	0	331	38	17	11	32	1.86
42554137--42554184	5	9.6	5	100	0	96	60	18	0	20	1.36
42554895--42554957	15	4.2	15	77	0	72	49	6	0	44	1.28
42559117--42559325	41	5.1	41	84	2	267	35	17	28	18	1.94
42559193--42559297	21	5.1	21	65	9	72	34	17	29	19	1.94
42559245--42559308	20	3.2	20	72	12	67	34	17	34	14	1.89
42566075--42566183	54	2.0	54	100	0	218	36	16	11	35	1.84
42566080--42566195	54	2.1	54	93	3	198	41	15	10	32	1.81
42580598--42580638	16	2.5	17	84	8	57	7	14	0	78	0.96
42580938--42580962	13	1.9	13	100	0	50	28	32	0	40	1.57
42581210--42581280	10	7.7	9	76	16	56	39	0	1	59	1.06
42581207--42581307	28	3.6	28	78	7	98	40	0	0	57	1.12
42581259--42581297	20	1.9	21	89	5	62	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42581430--42581603	92	1.9	89	80	5	197	35	10	17	36	1.84
42582875--42582918	23	1.9	23	81	9	54	25	4	9	61	1.45
42589432--42589491	27	2.1	28	87	12	86	35	20	16	28	1.94
42589660--42589799	40	3.7	36	75	13	104	25	19	21	33	1.97
42589779--42589941	69	2.4	68	82	1	191	21	22	23	33	1.98
42595258--42595436	85	2.1	85	97	0	340	37	7	27	26	1.84
42597576--42598217	47	13.6	47	92	3	1022	33	8	28	29	1.87
42603398--42603690	50	5.8	50	91	2	462	21	30	21	26	1.98
42603785--42603814	13	2.3	13	94	0	51	50	13	3	33	1.58
42605800--42605843	22	1.9	24	86	9	65	59	11	6	22	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216