genome.fa.s21.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  10  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3424587--3424627	20	2.1	20	86	13	59	34	2	14	48	1.57
3438207--3438237	2	15.5	2	100	0	62	48	51	0	0	1.00
3440224--3440274	20	2.6	20	75	12	52	45	1	17	35	1.60
3441035--3441075	20	2.0	20	100	0	82	14	4	24	56	1.58
3441413--3441489	39	2.0	38	82	12	95	15	14	3	66	1.40
3441413--3441489	37	2.0	39	82	12	97	15	14	3	66	1.40
3443309--3443351	22	2.0	22	90	9	70	32	0	0	67	0.91
3450772--3450836	31	2.1	31	91	2	105	58	13	3	24	1.50
3451332--3451396	27	2.4	27	87	5	87	40	21	21	16	1.92
3455565--3455599	11	3.2	11	88	11	54	0	54	0	45	0.99
3456356--3456392	19	1.9	19	88	0	56	40	2	5	51	1.39
3475877--3476551	44	15.3	44	76	5	470	27	16	26	29	1.97
3475918--3476504	132	4.4	132	95	0	1012	27	15	26	29	1.96
3478159--3478204	23	2.0	23	82	0	56	30	2	13	54	1.50
3478436--3478472	19	1.9	19	88	0	56	40	2	5	51	1.39
3479992--3480112	42	2.9	42	87	0	179	28	26	14	30	1.95
3483029--3483130	41	2.5	41	87	3	134	28	19	24	27	1.99
3497938--3497973	16	2.2	17	90	5	56	77	2	2	16	1.00
3503804--3503844	20	2.0	22	90	9	68	41	9	2	46	1.50
3505065--3505103	20	2.0	20	100	0	78	15	15	7	61	1.55
3509310--3509342	7	4.7	7	96	0	57	75	0	0	24	0.80
3516401--3516465	22	3.0	22	83	0	76	15	30	18	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3516556--3516614	31	1.9	31	92	0	100	52	3	22	22	1.61
3523328--3523365	15	2.5	15	100	0	76	47	0	5	47	1.24
3523501--3523588	25	3.6	24	79	17	101	15	26	18	39	1.90
3523514--3523581	22	3.0	22	86	6	73	14	27	19	38	1.91
3529409--3529492	43	2.0	43	95	0	150	32	15	14	38	1.87
3533171--3533843	335	2.0	334	95	0	1213	37	12	12	38	1.81
3566476--3566536	29	2.1	29	81	6	70	49	13	11	26	1.75
3569139--3569184	24	1.9	24	86	0	65	28	0	6	65	1.17
3569180--3569218	20	1.9	21	85	15	55	35	0	5	58	1.20
3570269--3570301	12	2.8	12	95	0	57	21	0	0	78	0.75
3572126--3572197	36	2.0	36	100	0	144	19	27	19	33	1.96
3578751--3578804	20	2.7	20	77	11	65	44	1	0	53	1.11
3582229--3582302	20	3.8	20	73	18	75	64	2	4	28	1.25
3583210--3583245	16	2.2	16	90	9	56	33	0	38	27	1.57
3583480--3583514	18	2.0	17	88	5	52	54	0	0	45	0.99
3583463--3583861	61	6.7	58	68	14	229	49	5	2	42	1.39
3583463--3583933	120	3.9	120	95	0	820	49	5	1	42	1.37
3583699--3583750	15	3.6	15	80	12	56	51	1	0	46	1.12
3584216--3584374	77	2.1	77	100	0	318	41	8	7	42	1.64
3586819--3586847	15	1.9	15	100	0	58	62	0	27	10	1.28
3589983--3590015	17	1.9	17	100	0	66	57	6	6	30	1.47
3593380--3593679	145	2.1	145	89	3	471	27	15	12	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3593744--3593816	31	2.4	31	79	6	87	17	9	16	56	1.66
3593653--3594052	138	2.9	135	77	10	438	25	14	12	48	1.78
3593444--3593909	243	1.9	244	88	5	697	26	13	11	48	1.77
3593691--3594042	135	2.6	132	86	6	454	25	13	11	49	1.76
3593966--3594156	105	1.9	103	90	5	307	26	12	11	49	1.74
3594876--3594917	14	2.9	15	82	10	52	38	33	0	28	1.58
3594854--3594928	29	2.6	29	78	16	93	36	37	0	26	1.57
3594909--3594948	20	2.0	20	85	9	55	40	40	0	20	1.52
3595499--3596041	114	4.9	110	84	8	642	26	26	22	24	2.00
3595499--3596041	224	2.5	217	86	4	745	26	26	22	24	2.00
3605945--3605969	13	1.9	13	100	0	50	32	0	0	68	0.90
3605938--3606025	36	2.5	37	81	10	103	43	1	3	52	1.25
3625300--3625349	26	1.9	26	84	8	66	28	10	10	52	1.67
3625371--3625410	17	2.4	17	86	0	53	40	2	0	57	1.12
3626443--3626500	29	2.0	29	90	3	91	36	0	6	56	1.26
3626502--3626540	21	1.9	20	84	5	51	53	2	5	38	1.37
3645187--3645269	30	2.8	30	92	0	139	59	9	3	27	1.46
3645198--3645252	19	3.3	19	63	36	54	54	10	3	30	1.52
3646847--3646884	15	2.5	15	84	12	51	65	0	2	31	1.06
3652208--3652244	19	2.0	20	89	10	60	35	8	0	56	1.29
3654383--3654475	42	2.2	44	80	5	102	55	5	5	33	1.45
3655940--3655973	17	2.1	17	88	5	52	5	8	44	41	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3656457--3656786	44	7.6	45	74	10	221	26	20	21	31	1.98
3665001--3665039	18	2.2	17	86	13	53	33	0	20	46	1.51
3665265--3665340	23	3.3	23	96	0	143	21	21	26	31	1.98
3672330--3672368	18	2.2	17	86	13	53	33	0	20	46	1.51
3672593--3672668	23	3.3	23	96	0	143	21	21	26	31	1.98
3674566--3674599	15	2.3	15	89	0	50	29	0	11	58	1.33
3679599--3679639	20	2.0	20	100	0	82	19	0	9	70	1.14
3682226--3682268	19	2.2	20	87	4	61	46	6	18	27	1.75
3686241--3686337	48	2.0	48	86	6	133	56	2	6	35	1.36
3686240--3686338	24	4.0	24	75	12	94	56	2	7	34	1.38
3696242--3696313	29	2.5	29	82	6	92	29	25	8	37	1.85
3706893--3706941	15	3.3	15	97	0	89	22	24	12	40	1.88
3723793--3723832	6	6.7	6	100	0	80	17	35	15	32	1.91
3726694--3726858	43	3.8	43	76	6	165	30	24	17	27	1.97
3726694--3726863	86	2.0	85	82	5	209	30	25	17	27	1.97
3728409--3728471	30	2.1	30	93	0	108	57	14	3	25	1.52
3732484--3732533	18	2.8	17	82	8	64	32	10	0	58	1.31
3732847--3732880	16	2.1	16	89	10	52	17	2	5	73	1.16
3739935--3740080	41	3.6	41	91	1	213	19	30	20	29	1.97
3739935--3740108	82	2.1	82	82	2	215	21	28	20	29	1.98
3742079--3742111	15	2.1	16	88	5	50	54	21	0	24	1.45
3744683--3744787	54	2.0	53	81	12	126	60	2	2	33	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3744780--3744840	21	3.0	21	83	11	90	52	4	1	40	1.33
3745306--3745366	28	2.3	25	83	8	77	32	3	1	62	1.21
3745392--3745449	20	3.0	19	78	12	57	37	0	3	58	1.15
3747190--3747267	42	1.9	40	82	7	95	21	29	28	20	1.98
3758362--3758388	14	1.9	14	100	0	54	29	7	0	62	1.22
3758749--3758773	6	4.2	6	100	0	50	84	0	0	16	0.63
3758767--3758797	16	1.9	16	100	0	62	58	3	0	38	1.15
3766111--3766149	11	3.5	11	86	10	53	58	0	2	38	1.12
3766146--3766170	11	2.3	11	100	0	50	84	0	0	16	0.63
3774326--3774380	28	2.0	28	100	0	110	40	14	14	30	1.86
3775277--3775328	23	2.3	23	83	9	63	51	15	17	15	1.76
3777855--3777897	20	2.2	20	83	8	52	30	0	16	53	1.43
3777866--3777926	21	3.0	22	81	15	69	32	0	16	50	1.45
3777846--3777913	35	1.9	35	81	0	82	33	0	16	50	1.45
3777848--3777940	27	3.4	25	75	19	80	33	1	16	49	1.53
3778337--3778426	42	2.1	42	91	0	144	36	8	20	34	1.84
3785650--3785837	90	2.1	92	85	7	251	45	3	3	47	1.38
3785784--3785831	26	1.9	25	84	16	64	45	0	2	52	1.12
3785909--3786118	66	3.4	63	69	22	192	41	3	6	48	1.44
3785872--3786162	119	2.4	120	92	5	484	42	2	4	49	1.38
3785992--3786025	17	2.0	17	88	11	52	44	0	0	55	0.99
3786124--3786165	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3786115--3786156	15	2.9	15	82	10	52	47	0	0	52	1.00
3786115--3786342	75	3.0	75	62	17	173	46	3	3	46	1.35
3786099--3786379	150	1.9	151	96	0	519	47	3	3	45	1.34
3786261--3786295	18	2.0	17	88	5	52	45	0	0	54	0.99
3786285--3786334	26	2.0	25	84	11	66	50	0	4	46	1.20
3789013--3789092	29	2.6	30	84	5	90	45	11	8	35	1.71
3799057--3799108	20	2.6	19	84	9	59	63	5	19	11	1.47
3811896--3811924	3	9.7	3	100	0	58	0	65	0	34	0.93
3812299--3812360	29	2.2	28	85	2	79	56	6	0	37	1.25
3813467--3813507	21	2.0	21	85	9	57	39	2	4	53	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211