genome.fa.s21.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  137  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43249970--43250002	17	1.9	17	93	0	57	60	0	9	30	1.27
43251615--43251664	22	2.2	24	79	13	61	40	4	2	54	1.31
43252323--43252357	16	2.2	16	89	0	52	48	5	17	28	1.69
43253483--43253625	4	35.8	4	100	0	286	50	24	0	25	1.50
43256936--43256976	14	2.9	14	81	0	55	43	7	9	39	1.65
43256945--43257011	34	1.9	35	87	3	100	35	8	10	44	1.70
43267958--43268082	45	2.8	45	81	10	132	25	24	22	27	2.00
43268191--43268299	44	2.5	44	79	13	116	26	22	20	30	1.98
43268267--43268722	44	10.6	44	70	11	223	28	21	20	29	1.98
43267965--43268425	217	2.1	217	89	2	719	27	22	21	29	1.99
43268267--43268551	128	2.2	128	91	1	455	29	21	20	29	1.98
43268050--43268734	345	2.0	345	93	0	1172	27	21	20	29	1.98
43280541--43280598	16	3.5	16	78	17	57	72	5	3	18	1.18
43281665--43281690	3	8.7	3	100	0	52	69	0	0	30	0.89
43282341--43282383	16	2.6	17	83	16	56	39	0	2	58	1.11
43282864--43282892	3	9.7	3	100	0	58	31	0	0	68	0.89
43290414--43290485	28	2.6	28	77	0	81	33	20	1	44	1.61
43290434--43290476	7	6.1	7	77	0	50	30	16	0	53	1.43
43295565--43295594	13	2.4	13	94	5	53	40	6	16	36	1.75
43296269--43296302	6	5.7	6	96	0	59	17	55	14	11	1.68
43296267--43296308	18	2.3	18	79	0	57	16	61	11	9	1.55
43297590--43297635	25	1.9	24	82	8	58	39	2	2	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43297653--43297730	10	7.8	10	71	5	59	37	0	0	62	0.95
43297650--43297733	31	2.8	31	94	3	145	39	0	0	60	0.97
43303096--43303134	18	2.1	18	85	4	51	38	2	0	58	1.12
43304436--43304472	18	2.1	18	100	0	74	37	16	5	40	1.71
43304644--43304673	10	2.8	11	95	5	53	63	0	0	36	0.95
43306306--43306343	20	1.9	20	88	0	58	55	0	13	31	1.38
43306331--43306475	16	9.1	16	70	16	70	54	4	6	34	1.46
43306353--43306492	44	3.0	46	87	8	194	56	4	5	33	1.43
43306404--43306474	20	3.3	20	68	21	63	59	2	5	32	1.35
43306402--43306491	8	10.8	8	70	18	51	61	3	4	31	1.32
43313517--43313548	17	1.9	17	93	6	57	56	3	9	31	1.47
43322596--43322646	3	17.0	3	100	0	102	33	0	0	66	0.92
43324338--43324634	36	8.4	36	67	10	182	31	20	24	23	1.98
43324335--43324634	71	4.2	71	81	5	329	32	20	24	23	1.98
43324338--43324594	141	1.8	142	88	1	399	32	20	23	23	1.98
43333456--43333553	41	2.4	40	81	6	126	63	11	0	25	1.27
43338555--43338619	25	2.6	26	82	4	71	35	23	18	23	1.96
43341342--43341387	23	2.0	23	95	0	83	23	39	4	32	1.75
43344937--43345071	67	2.0	67	94	0	234	28	31	18	21	1.97
43353445--43353479	18	1.9	18	88	0	52	54	20	11	14	1.70
43354222--43354325	31	3.4	30	84	5	145	19	38	25	17	1.93
43354222--43354352	62	2.1	63	85	7	178	19	38	23	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43359720--43359793	29	2.5	30	80	8	80	29	12	12	45	1.78
43359942--43360005	18	3.5	18	71	12	67	60	4	4	29	1.37
43359945--43360025	37	2.2	37	97	0	153	64	2	7	25	1.33
43359961--43360020	18	3.3	18	72	4	66	63	1	10	25	1.35
43368671--43368728	17	3.3	18	77	17	52	41	0	0	58	0.98
43374032--43374131	25	4.0	25	76	5	78	22	21	18	39	1.93
43374906--43375302	133	3.0	132	97	0	740	30	5	25	38	1.79
43376001--43376044	17	2.6	17	82	10	63	45	0	11	43	1.40
43385807--43385839	16	2.1	16	88	5	50	72	6	3	18	1.18
43385808--43385867	24	2.4	23	73	13	57	71	3	3	21	1.15
43385809--43385894	37	2.2	39	81	10	95	69	2	2	25	1.12
43385807--43385872	26	2.6	26	79	9	66	71	3	3	22	1.14
43386646--43386764	51	2.3	51	82	2	132	31	21	7	39	1.81
43387706--43387740	15	2.4	15	90	4	54	48	0	8	42	1.33
43392217--43392255	14	2.7	14	84	4	51	58	2	2	35	1.25
43392309--43392353	23	2.0	23	86	4	65	68	0	6	24	1.13
43392494--43392530	18	2.1	18	90	10	58	62	5	0	32	1.18
43393708--43393746	14	2.8	14	80	0	51	17	10	38	33	1.84
43394305--43394351	12	3.9	12	76	17	53	23	6	0	70	1.10
43395370--43395430	16	3.8	16	76	20	56	75	1	1	21	0.98
43395370--43395416	10	4.7	10	79	7	51	74	2	0	23	0.93
43395979--43396013	15	2.4	15	90	4	54	48	0	8	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43397555--43397634	40	2.0	40	95	0	142	42	10	21	26	1.84
43397571--43397654	40	2.1	40	81	0	96	45	13	16	25	1.83
43398970--43399072	40	2.6	40	93	0	170	41	10	23	24	1.86
43397535--43400421	715	4.0	718	84	5	3448	38	14	23	23	1.92
43399688--43399827	40	3.5	40	93	0	228	42	12	20	25	1.86
43402830--43402961	50	2.7	50	90	3	205	31	25	15	28	1.95
43403035--43403164	51	2.5	51	76	4	129	29	28	16	26	1.97
43402928--43403164	102	2.3	101	85	2	314	29	27	16	27	1.97
43409960--43410300	51	6.8	50	73	9	259	29	26	15	27	1.96
43410064--43410300	102	2.3	101	86	2	332	29	28	15	27	1.96
43411931--43411978	19	2.7	18	83	6	53	72	6	4	16	1.20
43412529--43412581	21	2.5	21	72	6	54	60	3	3	32	1.32
43412616--43412667	17	2.9	18	85	5	61	57	1	0	40	1.10
43413511--43413621	57	1.9	57	89	3	170	28	17	11	42	1.84
43418884--43418922	19	2.1	19	85	9	53	43	10	2	43	1.52
43419419--43419461	16	2.7	16	85	0	59	32	9	13	44	1.76
43423753--43423796	21	2.2	20	83	4	52	40	2	0	56	1.11
43429837--43429924	28	3.2	27	75	12	81	47	6	21	23	1.74
43431108--43431175	27	2.5	26	68	15	66	44	5	10	39	1.63
43431536--43431579	7	6.4	7	82	15	56	56	0	0	43	0.99
43431553--43431587	15	2.2	16	90	5	54	54	2	0	42	1.15
43431546--43431585	21	1.9	21	85	10	55	55	2	0	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43440469--43440499	13	2.3	14	94	5	55	51	0	6	41	1.27
43440691--43440874	41	4.5	41	80	2	183	20	27	15	36	1.93
43454889--43454931	22	2.0	22	81	9	52	44	4	11	39	1.62
43456366--43456407	21	2.0	21	85	0	57	42	2	0	54	1.13
43460191--43460259	33	2.1	33	81	10	79	71	5	7	15	1.29
43464512--43464679	67	2.6	65	77	11	186	41	3	3	51	1.36
43478456--43478492	18	2.1	18	90	5	58	18	24	37	18	1.94
43485023--43485051	14	2.0	15	93	6	51	10	6	20	62	1.50
43495146--43495316	43	4.0	43	80	11	172	25	16	26	30	1.97
43497162--43497204	23	2.0	23	90	9	72	23	4	23	48	1.69
43497532--43497575	13	3.5	13	75	12	56	56	4	2	36	1.32
43501631--43501689	18	3.1	18	75	15	64	50	0	3	45	1.18
43501609--43501689	40	2.0	43	90	7	132	50	0	3	45	1.19
43503416--43503463	20	2.2	20	82	10	51	41	0	2	56	1.11
43504715--43504752	12	3.2	12	96	3	69	52	0	18	28	1.45
43505099--43505146	21	2.3	21	78	7	53	64	8	4	22	1.38
43508867--43508902	16	2.1	17	90	10	56	25	0	2	72	0.98
43509128--43509176	25	1.9	26	91	4	82	53	40	2	4	1.32
43515825--43515880	27	2.1	27	93	0	94	39	25	3	32	1.73
43539091--43539120	14	2.1	14	100	0	60	30	6	26	36	1.82
43541842--43541890	13	3.8	13	83	0	71	30	8	26	34	1.86
43545049--43545199	75	2.0	75	94	2	268	30	19	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43559493--43559703	102	2.1	102	92	0	350	24	23	16	36	1.94
43566995--43567048	28	1.9	28	84	0	72	25	12	3	57	1.52
43567030--43567065	7	5.1	7	100	0	72	44	13	0	41	1.44
43567182--43567285	51	2.0	52	88	5	158	42	1	7	48	1.43
43577182--43577286	28	3.8	28	83	0	120	32	24	20	22	1.98
43577620--43577672	27	2.0	27	88	0	79	26	13	18	41	1.87
43577650--43578223	27	21.3	26	77	6	328	19	17	20	42	1.89
43577650--43578223	81	7.1	81	79	7	413	19	17	20	42	1.89
43588734--43588797	26	2.4	27	82	17	82	62	3	0	34	1.11
43588689--43588831	9	15.6	9	70	15	71	62	4	1	31	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211