genome.fa.s21.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  184  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56968592--56968622	7	4.4	7	100	0	62	29	0	38	32	1.57
56968686--56968897	115	1.9	111	80	7	250	26	2	28	42	1.67
56968879--56968928	21	2.4	22	83	6	68	18	0	44	38	1.50
56968882--56968945	28	2.2	29	81	10	78	17	0	43	39	1.49
56969656--56969703	25	2.0	25	84	12	64	12	6	18	62	1.50
56970027--56970232	43	4.8	42	82	7	220	23	19	29	27	1.98
56970372--56970502	14	9.0	14	69	19	81	0	29	0	70	0.93
56970362--56970444	24	3.7	23	76	14	91	0	28	0	71	0.87
56970390--56970501	4	27.0	4	74	21	74	0	29	0	69	0.94
56970362--56970498	44	3.1	44	78	10	165	0	29	0	70	0.93
56970357--56970501	18	8.1	19	72	25	97	0	29	0	69	0.93
56970379--56970488	38	2.8	40	77	14	131	0	29	0	70	0.94
56970439--56970515	26	2.8	26	75	11	66	1	32	0	66	1.00
56970556--56970614	27	2.2	27	90	0	91	15	30	33	20	1.93
56985909--56985942	13	2.6	13	95	0	59	20	0	38	41	1.53
56986438--56986481	21	2.2	21	84	8	56	59	0	4	36	1.18
56988786--56988839	11	4.8	12	72	19	53	24	31	3	40	1.72
56988799--56988898	51	2.0	51	84	7	132	25	26	3	46	1.67
56990044--56990069	7	3.7	7	100	0	52	26	0	15	57	1.38
56991016--56991064	21	2.3	21	86	6	64	32	38	26	2	1.68
56991749--56991790	13	3.2	13	89	0	57	45	7	14	33	1.72
56991974--56992031	30	1.9	30	86	13	84	50	0	3	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57008554--57008595	23	2.0	20	95	5	57	40	11	9	38	1.75
57022870--57023118	50	4.8	50	86	4	302	20	29	23	26	1.99
57022869--57023118	100	2.4	104	88	6	357	20	29	23	26	1.99
57023218--57023244	13	2.1	13	100	0	54	62	7	0	29	1.22
57023456--57023513	30	1.9	30	89	0	89	31	24	3	41	1.71
57030393--57030427	15	2.4	15	90	4	54	48	0	8	42	1.33
57030393--57030451	29	2.0	29	83	6	75	44	0	10	45	1.37
57033251--57033340	42	2.2	42	93	2	155	24	15	13	46	1.82
57034472--57034502	15	2.1	15	100	0	62	54	25	6	12	1.62
57034627--57034668	22	1.9	22	90	0	66	11	21	26	40	1.88
57034723--57034886	43	3.8	43	83	1	195	29	29	20	20	1.98
57034724--57035018	43	6.9	43	78	6	165	29	29	18	22	1.97
57034810--57035040	43	5.4	43	77	6	177	28	29	16	25	1.97
57035394--57035518	66	1.9	66	90	6	200	16	24	17	41	1.89
57035411--57035539	66	2.0	66	85	3	179	16	25	17	41	1.89
57035607--57035652	23	1.9	24	86	8	67	13	21	26	39	1.90
57040724--57040810	20	4.3	20	78	7	95	36	18	33	11	1.87
57042160--57042193	11	3.1	11	86	0	50	52	8	2	35	1.47
57046149--57046201	13	3.9	13	77	18	54	71	1	18	7	1.19
57048072--57048204	39	3.0	44	64	25	118	54	11	9	24	1.66
57047954--57048414	90	5.2	88	84	3	516	52	12	7	27	1.65
57048828--57048962	59	2.3	59	79	6	150	29	19	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57056558--57056620	27	2.3	27	80	0	72	30	15	28	25	1.96
57056609--57056668	27	2.2	27	81	0	75	23	13	30	33	1.93
57068793--57069083	46	6.6	45	84	10	361	35	14	21	28	1.93
57068829--57068901	36	2.0	36	94	0	128	36	13	20	28	1.91
57068793--57069040	82	2.8	86	85	8	333	35	14	21	28	1.92
57078721--57078780	31	1.9	31	93	0	102	38	5	16	40	1.71
57078768--57078827	31	1.9	31	83	6	77	43	15	10	31	1.79
57080110--57080282	42	4.1	42	80	2	184	26	24	21	27	1.99
57080110--57080274	85	1.9	85	82	2	206	26	24	21	27	1.99
57080631--57080679	21	2.3	21	85	0	62	6	38	20	34	1.77
57080716--57080787	21	3.4	21	90	0	99	2	47	16	33	1.61
57080633--57080827	108	1.8	108	91	0	327	10	32	18	37	1.85
57084620--57084665	22	2.1	22	84	8	58	34	36	4	23	1.75
57084977--57085064	39	2.2	40	86	9	128	47	23	2	26	1.63
57085455--57086114	208	3.2	208	91	0	1043	29	23	17	28	1.97
57096066--57096165	42	2.4	42	98	0	191	38	10	26	26	1.87
57098011--57098054	23	1.9	22	82	17	54	38	22	0	38	1.55
57098125--57098171	23	2.0	23	95	0	85	31	27	21	19	1.97
57098138--57098203	32	2.1	32	100	0	132	33	30	21	15	1.94
57099881--57099970	23	3.8	24	76	2	76	26	12	20	41	1.87
57103047--57103106	28	2.1	28	100	0	120	38	11	20	30	1.88
57110611--57110757	46	3.3	46	75	4	165	14	18	23	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57110555--57110708	68	2.3	68	80	2	184	15	17	21	45	1.85
57116431--57116503	22	3.3	22	80	0	83	30	28	15	26	1.96
57118859--57118927	25	2.8	24	80	8	77	27	23	15	33	1.95
57121068--57121173	52	2.0	52	90	0	167	45	14	11	29	1.79
57124705--57124756	27	1.9	27	81	14	63	32	5	1	59	1.32
57126155--57126210	27	2.1	27	100	0	112	37	0	35	26	1.57
57128416--57128442	14	1.9	14	100	0	54	29	0	0	70	0.88
57132440--57132465	12	2.2	12	100	0	52	15	30	15	38	1.88
57136721--57136768	17	2.8	16	78	12	51	45	16	0	37	1.48
57142685--57142782	50	2.0	50	85	0	133	41	14	13	30	1.84
57144587--57144627	19	2.0	21	86	9	59	36	19	0	43	1.51
57154337--57154437	31	3.3	31	73	8	107	52	3	2	40	1.35
57154740--57154909	85	2.0	85	97	0	322	20	23	17	38	1.93
57158829--57158964	41	3.5	39	77	10	143	34	25	15	24	1.95
57159832--57159863	16	2.1	15	94	5	55	0	21	0	78	0.76
57161810--57162049	107	2.2	108	84	1	311	19	18	22	40	1.91
57161808--57162060	134	1.9	134	87	1	373	19	18	21	40	1.91
57161810--57162083	27	10.2	27	82	3	284	18	17	22	41	1.90
57162695--57162741	24	1.9	24	86	4	67	27	34	0	38	1.57
57165007--57165247	27	9.0	27	83	7	258	20	17	20	41	1.90
57165007--57165254	54	4.6	53	82	6	293	20	17	20	41	1.90
57165015--57165247	107	2.2	108	87	2	335	20	17	20	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57170659--57170747	46	1.9	46	88	0	133	35	10	15	38	1.81
57171837--57171871	16	2.2	16	89	0	52	34	5	8	51	1.56
57176039--57176082	16	2.6	18	82	10	56	43	22	0	34	1.54
57178749--57178877	25	5.2	25	76	7	113	31	20	28	18	1.97
57178749--57178877	50	2.6	49	82	6	145	31	20	28	18	1.97
57178795--57178877	24	3.4	24	81	8	89	34	20	28	15	1.94
57181207--57181244	18	2.2	17	86	9	51	55	10	0	34	1.34
57187973--57188022	19	2.6	20	78	6	59	48	0	28	24	1.52
57187918--57188077	74	2.2	73	87	7	225	44	0	31	24	1.54
57187992--57188064	27	2.7	27	77	12	78	43	0	30	26	1.55
57190241--57190488	43	5.8	43	85	1	327	25	28	18	27	1.98
57190833--57190878	21	2.2	21	88	0	65	6	39	19	34	1.78
57190920--57190965	21	2.2	21	88	0	65	4	39	19	36	1.72
57190833--57191031	87	2.3	87	89	0	290	11	29	19	39	1.86
57191812--57191848	19	1.9	19	100	0	74	18	32	5	43	1.73
57194892--57194943	26	1.9	27	84	7	70	21	9	13	55	1.66
57199225--57199381	41	3.8	41	84	1	197	21	17	31	30	1.96
57200767--57200876	54	2.0	54	92	0	184	17	24	33	24	1.96
57201462--57201491	9	3.3	9	95	0	51	60	23	0	16	1.36
57209056--57209103	24	1.9	24	83	8	60	33	14	6	45	1.70
57212867--57212914	13	3.7	13	85	0	69	22	6	27	43	1.77
57215106--57215154	20	2.5	19	77	6	53	63	6	14	16	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57223116--57223142	6	4.5	6	100	0	54	18	0	0	81	0.69
57227203--57227239	14	2.6	14	95	0	65	32	21	10	35	1.88
57228513--57228574	21	3.0	21	87	0	88	43	17	19	19	1.88
57239322--57239362	21	2.0	21	90	0	64	19	29	21	29	1.98
57242702--57242747	17	2.8	16	80	9	56	67	2	0	30	1.03
57243212--57243255	10	4.4	11	80	16	51	59	2	0	38	1.10
57243631--57243680	20	2.5	20	78	12	57	30	6	2	62	1.31
57248263--57248310	23	2.1	24	88	7	73	18	4	18	58	1.55
57248270--57248319	23	2.1	24	88	3	75	18	2	18	62	1.43
57258534--57258574	18	2.3	18	95	4	75	60	9	19	9	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211