genome.fa.s21.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  118  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37258193--37258234	14	3.1	14	89	3	59	76	0	16	7	1.00
37259081--37259124	14	3.1	15	87	9	65	70	0	15	13	1.17
37259081--37259124	7	6.1	7	82	12	54	70	0	15	13	1.17
37260930--37260995	31	2.1	31	88	0	96	22	22	25	28	1.99
37270091--37270147	19	3.0	20	82	10	66	56	0	3	40	1.17
37270855--37270889	16	2.2	16	89	0	52	25	8	8	57	1.57
37280259--37280303	22	2.0	23	82	8	56	42	8	8	40	1.67
37283131--37283165	18	2.0	18	88	5	54	37	0	0	62	0.95
37296664--37296886	94	2.3	96	85	2	297	41	3	18	37	1.66
37300854--37300912	30	2.0	30	82	0	73	8	15	44	32	1.76
37300866--37300927	30	2.1	30	84	6	81	9	12	45	32	1.75
37302567--37302626	28	2.2	28	84	3	77	55	1	3	40	1.27
37303042--37303070	14	2.0	15	93	6	51	27	0	3	68	1.05
37307889--37308010	52	2.4	50	83	12	162	40	6	2	50	1.42
37307970--37308039	28	2.6	27	88	4	88	42	7	0	50	1.30
37307938--37308039	26	3.8	27	76	13	113	45	6	1	46	1.41
37308405--37308444	18	2.2	18	100	0	80	45	5	27	22	1.73
37323578--37323615	17	2.2	18	85	4	51	36	2	5	55	1.37
37324639--37324671	17	2.0	17	88	5	50	18	9	6	66	1.40
37325492--37325538	25	2.0	23	87	8	67	36	4	4	55	1.39
37325778--37325896	11	11.4	11	73	22	96	61	0	2	36	1.10
37325769--37325885	40	2.9	38	82	11	121	64	0	1	34	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37325779--37325896	51	2.3	52	92	1	202	61	0	2	36	1.10
37330920--37331159	101	2.4	101	91	0	399	28	24	16	30	1.96
37343975--37344052	38	2.1	38	92	0	129	43	24	7	24	1.80
37347689--37347730	7	6.0	7	94	0	75	69	0	14	16	1.20
37348953--37349230	87	3.2	87	84	4	355	27	21	25	25	2.00
37349202--37349493	128	2.3	126	77	10	324	31	18	24	26	1.97
37349439--37349719	44	6.5	43	70	12	164	28	17	24	29	1.97
37353944--37354334	112	3.5	111	89	4	576	36	18	13	32	1.89
37354596--37354653	26	2.2	27	79	11	66	27	5	0	67	1.12
37354735--37354772	20	1.9	20	100	0	76	47	0	0	52	1.00
37362127--37362303	46	3.8	46	90	0	291	36	9	24	29	1.87
37367067--37367120	25	2.2	25	93	0	90	27	9	25	37	1.87
37369366--37369569	94	2.2	92	90	5	313	37	19	11	31	1.87
37369615--37369652	20	1.9	20	84	10	51	34	13	15	36	1.87
37369713--37369850	10	14.8	10	68	19	52	66	2	0	30	1.08
37369716--37369748	16	2.1	16	100	0	66	75	0	0	24	0.80
37369713--37369829	29	4.2	25	71	23	67	67	1	0	29	1.06
37369733--37369829	28	3.4	27	78	16	90	65	2	1	30	1.10
37369713--37369850	19	7.4	19	71	14	76	66	2	0	30	1.08
37369729--37369812	29	2.9	28	83	13	98	65	2	0	32	1.05
37369713--37369841	26	4.7	27	72	16	77	65	1	0	31	1.07
37369713--37369850	28	5.0	27	75	15	81	66	2	0	30	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37370112--37370217	10	10.8	10	67	15	51	32	6	0	60	1.29
37370112--37370176	30	2.2	28	82	15	78	29	4	0	66	1.12
37370138--37370216	19	4.1	19	75	9	63	32	7	1	58	1.34
37370208--37370272	28	2.3	29	84	7	80	38	1	1	58	1.17
37370439--37370645	83	2.4	85	84	7	244	32	10	18	39	1.84
37371821--37371857	18	2.1	18	100	0	74	27	5	10	56	1.55
37372346--37372377	11	2.9	11	95	0	55	9	12	9	68	1.39
37374216--37374253	18	2.1	18	95	0	67	42	21	13	23	1.88
37376317--37376353	6	6.2	6	93	0	56	0	13	16	70	1.17
37380413--37380446	12	2.8	12	90	0	50	41	11	2	44	1.56
37384722--37384926	27	7.6	27	83	3	223	26	15	29	29	1.96
37384723--37384926	54	3.8	54	84	3	257	25	15	29	29	1.96
37387872--37387904	14	2.3	15	89	5	50	27	15	33	24	1.95
37387993--37388073	5	15.8	5	81	12	85	77	0	20	1	0.83
37387983--37388068	6	14.8	6	80	12	67	76	0	20	2	0.89
37387983--37388068	11	7.5	11	79	17	86	76	0	20	2	0.89
37387989--37388073	28	3.0	28	82	8	100	76	0	22	1	0.85
37387996--37388075	14	5.6	14	70	16	65	77	0	21	1	0.84
37389313--37389850	89	6.0	89	89	0	770	29	25	21	23	1.99
37389433--37389838	44	9.1	46	73	11	184	29	25	21	23	1.99
37404585--37404622	19	2.0	19	100	0	76	36	31	5	26	1.79
37411762--37411828	17	3.7	17	70	25	57	46	23	1	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37411681--37411857	39	4.5	39	94	0	300	46	22	3	28	1.68
37420401--37420427	6	4.5	6	100	0	54	18	0	48	33	1.49
37422634--37422665	3	10.7	3	100	0	64	68	0	0	31	0.90
37423078--37423144	31	2.2	30	84	7	82	43	2	10	43	1.54
37424582--37424645	29	2.2	29	86	5	85	26	12	12	48	1.76
37424837--37424949	59	1.9	58	83	5	147	44	8	6	40	1.61
37427893--37427931	18	2.2	18	85	0	51	41	0	28	30	1.57
37431348--37432246	452	2.0	452	98	0	1744	31	14	23	30	1.94
37439452--37439503	7	7.6	7	83	12	72	71	0	15	13	1.15
37439451--37439503	21	2.6	21	90	3	90	71	0	15	13	1.14
37440958--37441469	44	11.0	44	67	18	234	33	18	21	26	1.96
37440958--37441054	43	2.2	44	85	1	124	30	21	24	22	1.99
37440962--37441531	142	4.0	142	93	0	946	33	18	20	27	1.96
37441147--37441328	98	1.9	97	81	6	224	32	18	20	28	1.96
37441293--37441470	98	1.8	97	80	7	216	32	18	20	29	1.96
37441391--37441480	44	2.0	44	91	0	144	32	18	21	27	1.97
37441693--37441874	99	1.8	100	85	1	258	36	23	18	22	1.95
37447967--37448000	7	4.9	7	100	0	68	26	44	0	29	1.55
37448710--37448750	15	2.6	16	81	14	50	58	2	2	36	1.24
37448728--37448771	17	2.6	17	75	13	54	63	0	0	36	0.95
37449655--37449693	20	2.0	20	89	0	60	38	2	0	58	1.12
37450140--37450203	33	2.0	30	82	8	74	46	3	6	43	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37451784--37451827	15	3.0	15	76	6	54	54	2	0	43	1.12
37452274--37452349	27	2.8	27	93	2	134	32	28	7	30	1.86
37461861--37461969	36	3.0	36	97	0	200	38	11	20	30	1.87
37461825--37462055	82	2.8	85	77	19	249	36	12	21	29	1.90
37461933--37462055	46	2.7	45	90	6	187	35	13	21	29	1.92
37463806--37463983	3	59.3	3	96	0	329	65	0	34	0	0.93
37466037--37466120	24	3.5	24	75	3	78	17	22	19	40	1.91
37466274--37466343	25	2.8	25	80	2	77	24	22	21	31	1.98
37469171--37469262	39	2.3	39	88	5	132	25	28	22	23	2.00
37469152--37469315	40	4.1	40	80	10	176	24	27	23	25	2.00
37473698--37473752	25	2.2	25	83	6	67	43	16	10	29	1.82
37478843--37478947	44	2.5	40	77	18	115	33	29	4	32	1.78
37478860--37478949	45	2.0	44	89	6	137	35	28	5	30	1.80
37478929--37478961	16	2.1	16	94	0	57	24	33	6	36	1.80
37482315--37482394	34	2.3	35	85	6	101	41	0	2	56	1.13
37495342--37495390	14	2.9	18	68	22	52	59	2	0	38	1.09
37495811--37495904	38	2.5	39	78	14	108	40	2	0	57	1.11
37497650--37497701	19	2.6	21	77	20	58	44	9	17	28	1.80
37497833--37497874	20	2.2	19	91	4	66	38	9	11	40	1.75
37498889--37498928	20	2.0	20	85	9	55	35	25	10	30	1.88
37503159--37503436	140	2.0	140	98	0	538	33	11	20	34	1.89
37506206--37506244	18	2.2	17	86	13	53	33	0	20	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37506470--37506545	23	3.3	23	80	14	102	25	21	23	30	1.99
37520186--37520231	22	2.0	23	95	4	85	21	10	4	63	1.44
37520606--37520774	59	2.9	58	89	5	259	46	11	18	23	1.81
37521023--37521072	21	2.4	21	80	12	59	46	2	0	52	1.12
37529532--37529569	20	1.9	20	94	0	67	47	10	0	42	1.38
37529525--37529559	12	2.9	12	91	0	52	48	11	2	37	1.54
37538800--37538857	30	1.9	30	89	0	89	41	3	24	31	1.71
37539069--37539100	13	2.5	13	94	0	55	31	0	12	56	1.37
37539195--37539436	50	4.7	50	85	3	295	26	23	29	19	1.99
37539199--37539444	100	2.4	104	86	5	356	26	23	28	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211