genome.fa.s21.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  37  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10846236--10846267	13	2.4	14	89	10	57	28	0	31	40	1.57
10848231--10848346	62	1.9	59	85	5	160	42	4	2	50	1.35
10855292--10855333	21	2.0	21	85	0	57	16	45	19	19	1.86
10856998--10857035	18	2.2	18	86	9	53	47	7	10	34	1.67
10868121--10868158	19	2.0	19	100	0	76	21	10	5	63	1.46
10870587--10870624	17	2.2	18	95	4	69	28	10	15	44	1.80
10872973--10873013	17	2.4	17	95	4	73	29	9	14	46	1.77
10876362--10876388	14	1.9	14	100	0	54	29	14	33	22	1.94
10877885--10877962	23	3.3	23	66	16	68	34	1	21	42	1.61
10877875--10877968	49	1.9	49	95	0	170	37	1	20	41	1.59
10878198--10878287	23	4.0	23	75	8	94	21	25	18	34	1.96
10879369--10879393	13	1.9	13	100	0	50	48	0	16	36	1.46
10880642--10880719	30	2.6	30	78	8	95	43	7	15	33	1.75
10890233--10890262	7	4.4	7	91	8	53	13	0	0	86	0.57
10890233--10890262	13	2.2	14	94	5	53	13	0	0	86	0.57
10899719--10900006	100	2.9	100	85	3	366	57	13	1	26	1.45
10900081--10900147	34	2.0	34	96	0	125	62	11	0	25	1.29
10900513--10900553	19	2.1	20	86	13	59	73	0	0	26	0.84
10900513--10900554	20	2.1	20	86	8	59	73	0	0	26	0.83
10900756--10900800	20	2.2	20	88	8	63	62	2	0	35	1.08
10900821--10900876	20	2.8	20	79	15	62	55	3	0	41	1.17
10900840--10900883	20	2.2	20	92	8	72	61	4	0	34	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10906668--10906756	44	2.0	46	86	8	130	34	6	21	37	1.80
10906855--10906989	61	2.3	58	79	7	148	51	4	0	42	1.27
10923542--10923590	25	2.0	25	91	0	80	36	8	20	34	1.82
10938477--10939179	88	7.8	88	73	11	435	32	18	20	28	1.96
10938476--10939147	44	15.0	44	75	9	385	32	18	20	28	1.96
10939017--10939179	45	3.6	45	86	3	213	31	17	22	28	1.97
10949323--10949389	34	2.0	34	87	0	98	52	4	4	38	1.42
10964470--10964511	20	2.1	20	100	0	84	54	4	9	30	1.53
10972380--10972409	11	2.6	11	94	5	51	36	3	0	60	1.14
10975456--10975575	42	2.9	39	69	17	91	55	4	5	35	1.43
10986130--10986214	9	9.4	9	84	0	98	40	22	9	28	1.85
10986137--10986214	18	4.3	18	85	0	111	38	24	10	26	1.87
10986130--10986214	27	3.1	27	82	0	116	40	22	9	28	1.85
10986293--10986328	19	1.9	19	88	5	56	11	0	47	41	1.39
10986620--10986724	28	3.8	28	77	7	99	26	18	26	28	1.98
10994691--10994725	18	1.9	18	88	0	52	28	45	0	25	1.54
10994991--10995312	162	2.0	161	85	1	430	24	22	16	36	1.94
11001194--11001250	28	2.0	28	96	0	105	47	22	14	15	1.82
11003639--11003709	30	2.4	30	80	0	88	43	9	25	21	1.83
11003554--11003773	119	1.8	119	84	2	289	38	11	25	24	1.89
11009260--11009345	42	2.0	43	82	6	104	25	16	24	33	1.95
11009973--11010254	22	12.4	22	70	14	171	23	9	21	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11010040--11010087	11	4.4	11	79	10	53	25	2	27	45	1.64
11009976--11010231	69	3.7	68	85	3	343	24	9	20	46	1.80
11010178--11010239	11	5.6	11	69	7	54	22	8	24	45	1.79
11009973--11010231	138	1.9	138	87	3	387	23	9	20	45	1.80
11010109--11010276	91	1.8	91	83	5	223	23	8	20	46	1.79
11009989--11010310	138	2.3	136	80	11	336	24	9	19	45	1.80
11017797--11017957	22	7.2	22	74	9	146	23	9	22	44	1.83
11017839--11018007	47	3.7	47	74	7	175	23	11	20	45	1.82
11017797--11018026	91	2.5	90	90	2	361	23	9	21	45	1.81
11017915--11018075	69	2.3	69	85	1	214	22	10	20	45	1.81
11019527--11019630	52	2.0	52	90	3	165	35	16	20	27	1.94
11024215--11024253	12	3.2	13	89	10	64	64	12	0	23	1.28
11032268--11032311	22	2.0	22	82	8	54	13	15	6	63	1.49
11043020--11043054	17	2.0	18	88	5	54	65	11	14	8	1.46
11043910--11043988	20	4.0	20	80	4	81	32	8	12	45	1.73
11043911--11043988	40	2.0	39	87	7	113	32	8	12	46	1.73
11049937--11049975	20	2.0	20	100	0	78	41	0	2	56	1.13
11052233--11052282	20	2.5	20	86	0	64	32	12	14	42	1.82
11054205--11054311	53	2.0	53	94	0	187	50	9	15	24	1.74
11054575--11054602	13	2.2	13	100	0	56	46	7	17	28	1.75
11062880--11062938	29	2.0	29	100	0	118	30	13	10	45	1.76
11063855--11063929	17	4.5	16	75	12	62	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11065137--11065183	22	2.1	22	100	0	94	25	27	14	31	1.95
11065504--11065561	20	2.8	22	78	19	63	27	3	6	62	1.37
11065648--11065680	15	2.2	15	89	10	50	33	21	6	39	1.78
11068289--11068339	26	2.0	26	96	0	93	11	23	35	29	1.90
11068211--11068433	103	2.2	104	92	2	369	17	18	31	31	1.95
11068352--11068503	71	2.1	72	92	1	252	23	17	29	30	1.97
11075427--11075651	104	2.2	104	91	1	371	18	19	31	31	1.96
11075570--11075721	71	2.1	72	91	1	243	23	17	28	30	1.97
11081157--11081198	20	2.2	19	87	12	59	57	4	21	16	1.58
11091099--11091302	107	1.9	107	90	2	329	34	7	8	49	1.62
11091107--11091327	107	2.1	107	84	3	284	35	9	8	46	1.66
11095285--11095348	31	2.1	31	100	0	128	31	6	23	39	1.79
11096790--11096874	33	2.7	30	81	10	107	29	10	18	41	1.84
11096992--11097182	43	4.4	43	86	0	256	25	13	26	34	1.93
11115757--11115941	101	1.8	102	88	5	286	24	16	27	31	1.97
11115754--11115939	51	3.7	50	81	3	212	24	16	27	31	1.97
11121888--11121921	16	2.1	16	88	5	50	76	2	11	8	1.12
11122389--11122414	7	3.7	7	100	0	52	46	11	0	42	1.40
11127651--11127721	33	2.2	32	84	5	88	40	15	2	40	1.62
11127728--11127752	13	1.9	13	100	0	50	36	0	0	64	0.94
11128112--11128195	28	3.0	28	85	1	96	20	17	11	50	1.78
11129531--11130648	559	2.0	559	100	0	2236	28	15	17	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11132574--11132606	12	2.8	12	95	0	57	33	48	6	12	1.65
11133551--11133660	3	36.7	3	75	3	96	31	5	1	60	1.30
11134353--11134658	109	2.8	108	88	2	409	31	18	17	32	1.94
11137326--11137369	21	2.1	21	86	0	61	11	15	56	15	1.66
11137333--11137378	21	2.2	21	84	0	56	21	21	41	15	1.90
11148326--11148381	22	2.5	22	91	0	94	58	3	7	30	1.42
11149618--11149654	18	2.1	18	94	0	65	8	0	45	45	1.32
11150068--11150461	207	1.9	208	92	1	657	27	25	17	29	1.97
11150398--11150544	44	3.4	44	75	9	140	27	25	16	30	1.97
11149983--11150496	207	2.5	206	81	7	635	28	24	17	29	1.97
11150400--11150503	43	2.4	43	85	4	129	27	26	16	28	1.97
11150479--11150691	106	2.0	106	91	3	349	27	23	17	31	1.97
11150617--11150924	41	7.0	42	70	14	128	28	21	17	31	1.97
11152639--11152738	42	2.4	42	88	5	139	29	24	16	31	1.96
11152814--11152856	13	3.5	13	87	6	54	0	18	0	81	0.69
11157805--11157850	24	1.9	24	86	0	65	56	2	2	39	1.24
11162069--11162122	24	2.3	23	84	9	65	57	3	1	37	1.27
11172581--11172642	33	1.9	32	87	9	90	29	16	20	33	1.94
11172783--11172968	92	2.0	92	93	2	320	34	16	20	28	1.94
11174932--11174977	22	2.1	22	91	0	74	60	28	0	10	1.30
11176951--11176975	13	1.9	13	100	0	50	20	0	0	80	0.72
11179123--11179154	12	2.6	13	85	14	50	56	6	0	37	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11181082--11181115	5	6.6	5	96	3	59	76	0	0	23	0.79
11185777--11185817	21	2.0	21	90	9	66	36	2	0	60	1.10
11189221--11189280	28	2.1	29	96	3	113	46	13	25	15	1.81
11202449--11202482	8	4.5	8	92	7	54	17	0	0	82	0.67
11202445--11202481	14	2.7	13	88	12	56	18	0	0	81	0.70
11205788--11205849	22	2.8	23	78	7	67	30	30	24	14	1.95
11207671--11207738	33	2.1	33	97	0	127	19	16	16	48	1.81
11207974--11208010	18	2.1	18	90	10	58	8	21	10	59	1.56
11213119--11213179	11	6.0	10	73	9	52	27	0	26	45	1.54
11214035--11214076	11	3.7	12	79	20	54	30	28	0	40	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211