Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  16  of  211  ( 25274 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5214409--5214583
30
5.9
30
70
12
85
40
6
22
30
1.80
5214579--5214618
15
2.7
14
85
11
53
12
0
2
85
0.71
5214580--5214618
9
4.3
9
84
9
53
10
0
2
87
0.65
5216106--5216213
40
2.7
41
76
8
107
35
22
17
25
1.95
5216257--5216423
41
4.1
40
77
10
160
20
19
27
32
1.96
5217396--5217452
14
3.9
15
86
6
73
15
0
49
35
1.45
5217420--5217452
7
4.6
7
92
7
57
15
0
51
33
1.43
5217389--5217452
21
3.0
22
86
6
78
15
0
46
37
1.46
5220321--5220571
43
5.9
43
83
2
299
21
17
27
32
1.96
5220302--5220564
129
2.0
128
84
5
343
22
17
27
32
1.96
5224461--5224518
17
3.1
17
70
25
53
36
1
13
48
1.53
5224444--5224527
40
2.1
40
97
0
159
34
3
14
47
1.61
5224444--5224513
23
3.3
23
73
22
89
35
1
15
47
1.55
5225646--5225671
12
2.2
12
100
0
52
19
0
0
80
0.71
5231947--5231986
20
2.0
20
85
9
55
2
17
25
55
1.55
5232521--5232637
44
2.7
44
76
11
123
23
23
24
28
2.00
5232775--5233251
175
2.8
173
83
6
574
25
23
22
28
1.99
5232798--5233251
88
5.2
88
89
2
559
25
23
22
29
1.99
5234934--5234978
12
3.8
12
80
8
56
11
0
11
77
0.99
5234934--5234989
18
3.2
17
77
7
58
10
1
8
78
1.03
5242822--5242861
20
2.0
20
85
9
55
2
17
25
55
1.55
5247789--5247815
13
2.1
13
100
0
54
25
0
29
44
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5248010--5248499
38
13.4
36
78
11
426
25
22
15
36
1.93
5248010--5248499
73
6.7
73
82
3
556
25
22
15
36
1.93
5250947--5251009
30
2.1
30
100
0
126
17
46
25
11
1.81
5253587--5253771
101
1.8
102
89
5
295
22
17
29
30
1.97
5253586--5253779
51
3.9
49
81
10
223
22
18
29
29
1.97
5257341--5257652
100
3.1
100
87
0
453
30
21
21
26
1.98
5257335--5257619
50
5.7
50
70
1
230
30
21
22
25
1.99
5257344--5257652
50
6.2
50
69
0
204
30
21
22
26
1.98
5257659--5257779
44
2.8
44
82
1
145
29
17
22
30
1.96
5259902--5259977
26
2.9
26
84
3
82
40
6
3
48
1.48
5266406--5267017
44
13.9
44
79
6
625
31
15
25
28
1.96
5266435--5267017
89
6.6
88
82
7
605
31
14
25
27
1.95
5266687--5266760
36
2.1
36
100
0
148
37
12
27
22
1.90
5270624--5270671
23
2.2
21
85
14
62
41
4
0
54
1.20
5271687--5271720
8
4.5
8
96
3
54
64
5
0
29
1.17
5271680--5271727
16
3.1
15
84
6
60
64
4
2
29
1.23
5271842--5271898
19
2.8
20
73
7
62
56
5
7
31
1.49
5271871--5272089
25
9.0
25
72
14
129
56
4
5
33
1.42
5271956--5272087
47
2.9
44
71
19
108
58
3
4
34
1.34
5271871--5272089
49
4.5
46
70
19
128
56
4
5
33
1.42
5272578--5272752
30
5.8
30
89
1
237
20
4
48
26
1.67
5273459--5273712
75
3.3
75
87
5
343
33
22
18
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5273784--5273834
14
3.6
14
77
12
50
64
1
11
21
1.36
5273787--5273820
16
2.1
16
94
0
59
70
0
8
20
1.13
5273857--5274030
72
2.4
73
89
0
260
33
22
15
28
1.95
5282344--5282376
7
4.6
7
96
3
57
66
3
0
30
1.06
5282332--5282383
23
2.2
23
80
10
61
65
1
3
28
1.21
5282499--5282555
19
2.8
20
73
7
62
56
5
7
31
1.49
5282534--5282582
25
2.0
25
91
0
80
51
6
8
34
1.57
5282595--5282653
29
2.0
29
83
6
75
59
3
5
32
1.36
5282616--5282749
25
5.6
25
68
15
77
57
2
4
35
1.34
5282540--5282684
25
5.6
27
70
14
92
53
4
8
33
1.52
5283244--5283355
30
3.7
30
88
4
111
21
4
47
26
1.70
5283236--5283380
60
2.4
60
86
4
186
20
4
47
27
1.68
5283280--5283380
30
3.4
30
97
0
184
17
3
49
28
1.65
5285561--5285598
19
2.0
20
84
5
51
68
7
0
23
1.16
5288935--5289258
43
7.7
43
76
12
271
33
25
17
22
1.96
5288935--5289258
170
1.9
169
87
3
472
33
25
17
22
1.96
5288935--5289216
85
3.3
85
93
0
476
33
26
18
21
1.96
5293691--5293754
18
3.6
18
79
8
58
35
0
3
60
1.12
5295646--5295685
20
2.0
21
90
9
66
52
5
0
42
1.23
5295641--5295687
20
2.5
19
80
19
62
48
4
0
46
1.21
5309813--5309943
44
3.0
44
79
2
129
29
22
16
32
1.95
5310107--5310218
55
2.0
55
94
0
197
25
24
20
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5321089--5321160
36
2.0
36
100
0
144
25
25
30
19
1.98
5323706--5323751
22
2.1
22
95
0
83
23
19
17
39
1.92
5325310--5325334
3
8.3
3
100
0
50
32
0
68
0
0.90
5326299--5326323
5
5.0
5
100
0
50
60
20
0
20
1.37
5335000--5335032
12
2.8
12
90
9
50
30
15
15
39
1.88
5338262--5338294
12
2.8
12
90
9
50
30
15
15
39
1.88
5339510--5339561
25
2.2
25
83
10
65
44
3
1
50
1.31
5340620--5340653
17
2.1
16
88
5
50
41
0
2
55
1.15
5341572--5341646
28
2.6
29
72
10
73
44
4
2
49
1.35
5350960--5351004
23
2.0
23
81
0
54
22
0
15
62
1.33
5351457--5351498
19
2.2
19
87
8
59
45
2
2
50
1.27
5351869--5351903
4
8.5
4
87
6
52
25
2
0
71
1.00
5353041--5353101
28
2.2
28
82
5
70
47
1
6
44
1.39
5354264--5354323
26
2.3
26
79
0
66
70
6
1
21
1.20
5354274--5354313
6
6.3
6
83
11
53
77
5
0
17
0.94
5360434--5360470
18
2.1
18
100
0
74
45
10
16
27
1.80
5366007--5366046
20
2.0
20
90
0
62
5
12
10
72
1.26
5366009--5366052
20
2.3
19
84
7
54
2
9
9
79
1.02
5366612--5366705
29
3.1
31
90
7
156
44
13
9
31
1.76
5370093--5370132
18
2.2
18
86
8
55
22
2
17
57
1.52
5376320--5376370
25
2.0
25
100
0
102
27
27
3
41
1.73
5377119--5377226
30
3.8
30
76
16
104
32
26
5
35
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5377156--5377205
24
2.1
24
92
0
82
32
30
6
32
1.82
5377546--5377649
3
36.3
3
79
14
82
75
0
25
0
0.81
5377546--5377653
13
8.1
13
82
12
112
75
0
24
0
0.80
5378453--5378625
17
9.8
18
74
8
108
31
12
11
45
1.77
5378453--5378604
17
8.8
17
77
5
135
29
11
11
47
1.75
5378592--5378642
20
2.6
19
84
6
66
39
13
13
33
1.84
5386523--5386558
16
2.2
16
100
0
72
25
0
36
38
1.56
5386794--5386828
18
2.0
17
88
5
52
54
0
0
45
0.99
5386708--5387002
162
1.8
163
96
0
556
43
3
4
49
1.38
5386936--5386977
15
2.7
16
82
14
52
52
2
0
45
1.13
5386945--5386986
15
2.9
15
82
10
52
52
0
0
47
1.00
5386733--5387073
162
2.1
161
82
6
377
45
4
4
46
1.42
5387056--5387107
15
3.6
15
80
12
56
53
1
0
44
1.11
5387176--5387227
15
3.6
15
80
12
56
53
1
0
44
1.11
5386939--5387465
120
4.4
120
97
1
961
49
5
2
42
1.39
5387296--5387347
15
3.6
15
80
12
56
53
1
0
44
1.11
5387513--5387560
26
1.9
25
84
16
64
52
2
0
45
1.12
5387469--5387691
92
2.5
91
82
10
221
47
4
2
45
1.35
5390603--5390634
5
6.4
5
100
0
64
18
0
0
81
0.70
5396499--5397001
145
3.6
144
74
12
509
29
20
18
31
1.97
5396955--5397360
89
4.4
88
79
9
320
30
21
16
31
1.95
5396533--5397175
278
2.3
278
85
1
912
30
20
17
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5397015--5397266
140
1.8
140
85
1
362
30
19
17
32
1.95
5397196--5397508
94
3.3
94
86
1
441
29
22
17
30
1.97
5396577--5397362
44
17.1
44
70
15
412
29
20
17
31
1.96
5402273--5402298
12
2.2
12
100
0
52
61
0
0
38
0.96
5402840--5402872
11
3.1
11
86
4
50
81
0
0
18
0.68
5402986--5403071
43
2.0
43
97
0
163
39
9
29
22
1.85
5407404--5407492
3
30.0
3
70
6
65
60
5
2
31
1.32
5407498--5407561
29
2.2
28
80
2
74
59
4
15
20
1.54
5409038--5409074
9
4.1
9
92
0
65
45
13
10
29
1.77
5410195--5410245
13
3.9
13
77
10
59
37
0
1
60
1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211