genome.fa.s21.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  154  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48532243--48532325	10	8.3	10	75	15	64	1	28	0	69	0.96
48532374--48532440	27	2.5	27	82	0	80	16	37	20	25	1.93
48532478--48532526	19	2.4	21	83	16	68	6	6	8	79	1.05
48539764--48539843	32	2.6	29	77	16	88	67	0	0	32	0.91
48539764--48539806	16	2.8	15	80	13	52	65	0	0	34	0.93
48540269--48540297	13	2.1	14	93	6	51	68	0	0	31	0.89
48541057--48541119	32	2.0	32	83	0	81	44	6	6	42	1.55
48548746--48548789	21	2.0	23	86	8	65	43	6	0	50	1.29
48552807--48552899	22	4.2	21	80	14	98	34	6	2	56	1.37
48554916--48555274	41	8.8	41	79	5	316	16	25	24	34	1.95
48555026--48555221	81	2.4	81	82	6	218	15	25	23	35	1.94
48555752--48555789	15	2.5	15	86	0	58	21	0	42	36	1.53
48556053--48556079	14	1.9	14	100	0	54	37	3	14	44	1.63
48557118--48557172	28	2.0	28	82	7	67	20	3	43	32	1.69
48557336--48557404	35	2.0	36	83	11	90	53	8	0	37	1.32
48560205--48561079	31	29.2	30	80	10	838	47	10	2	39	1.52
48560207--48560294	22	4.2	21	66	28	53	50	12	0	37	1.41
48560300--48560353	22	2.3	22	87	9	72	46	11	1	40	1.50
48560315--48560360	22	2.1	22	95	0	83	47	10	0	41	1.38
48560528--48560572	22	2.0	22	95	0	81	46	11	0	42	1.39
48560584--48560628	22	2.0	22	95	0	81	46	11	0	42	1.39
48560205--48561079	268	3.3	267	91	5	1287	47	10	2	39	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48560796--48560840	22	2.0	22	95	0	81	46	11	0	42	1.39
48560930--48560983	22	2.3	22	87	9	72	46	11	1	40	1.50
48560354--48561079	56	12.3	57	82	10	622	46	10	2	39	1.52
48560945--48560990	22	2.1	22	95	0	83	47	10	0	41	1.38
48561002--48561046	22	2.0	22	95	0	81	46	11	0	42	1.39
48561067--48561111	16	2.8	16	100	0	90	44	24	0	31	1.54
48561067--48561185	9	14.3	9	69	19	80	43	17	0	37	1.55
48561095--48561180	34	2.6	34	81	3	95	45	13	1	39	1.52
48561153--48561185	16	2.1	16	94	0	57	51	18	0	30	1.46
48566610--48566780	66	2.6	65	82	4	200	40	18	27	13	1.88
48566751--48566795	21	2.1	21	91	0	72	37	17	42	2	1.62
48566759--48566802	21	2.1	21	86	0	61	34	20	43	2	1.64
48566771--48566842	21	3.4	21	77	7	74	37	16	41	4	1.68
48567007--48567046	22	1.9	21	85	10	55	27	0	2	70	1.01
48567143--48567473	43	7.7	43	77	8	221	25	18	29	27	1.98
48567398--48567496	43	2.3	42	91	1	153	26	29	24	20	1.99
48568582--48568615	17	1.9	17	88	5	50	55	8	11	23	1.63
48574643--48574777	67	2.0	67	92	0	225	20	16	33	29	1.95
48575918--48575945	3	9.3	3	100	0	56	32	0	0	67	0.91
48577632--48577668	16	2.3	16	90	0	65	24	10	32	32	1.90
48582792--48582867	23	3.3	23	86	0	116	31	27	19	21	1.97
48584675--48584719	19	2.2	20	88	7	65	60	0	4	35	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48584678--48584719	17	2.5	17	80	7	50	61	0	4	33	1.17
48584671--48584719	21	2.4	21	89	3	73	61	0	4	34	1.15
48586541--48586705	44	3.8	43	83	6	206	27	23	21	28	1.99
48586546--48586705	88	1.8	87	86	6	234	26	22	21	28	1.99
48586861--48587111	129	2.0	126	87	2	358	27	19	20	31	1.97
48586876--48587068	44	4.5	43	70	11	135	29	21	19	29	1.97
48586906--48587117	44	5.0	44	70	8	116	25	18	21	33	1.96
48587149--48587532	44	8.8	44	70	7	233	24	25	19	29	1.98
48587101--48587529	132	3.2	132	91	0	671	24	24	20	29	1.99
48587461--48587645	88	2.1	88	84	0	244	25	23	23	27	2.00
48589064--48589124	1	61.0	1	76	0	59	1	1	8	88	0.65
48589063--48589125	9	7.1	9	77	16	69	1	1	11	85	0.73
48589063--48589124	33	1.9	31	90	6	97	1	1	9	87	0.69
48599091--48599163	23	3.2	23	67	7	67	42	12	6	38	1.69
48599091--48599182	46	2.0	46	97	0	175	42	10	5	41	1.63
48599245--48599310	13	5.2	12	74	16	55	71	4	21	3	1.18
48599245--48599310	25	2.6	26	79	11	66	71	4	21	3	1.18
48607258--48607319	20	3.5	17	74	14	54	48	0	29	22	1.51
48607669--48607705	9	4.1	9	89	0	56	32	10	10	45	1.74
48608617--48608786	50	3.4	50	74	0	160	25	20	20	34	1.96
48608910--48609065	44	3.5	44	77	9	138	31	24	17	26	1.97
48609075--48609474	132	3.0	129	89	5	586	24	22	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48612385--48612418	8	4.2	8	92	0	59	76	14	0	8	1.01
48612355--48612419	12	5.2	12	70	7	58	67	9	6	16	1.38
48612610--48612639	13	2.3	13	94	0	51	73	0	3	23	0.98
48613829--48613883	21	2.7	19	81	10	56	0	18	10	70	1.15
48615248--48615299	26	2.0	26	100	0	104	30	23	30	15	1.95
48615249--48615305	26	2.2	26	93	0	96	31	21	29	17	1.96
48622592--48622636	20	2.2	21	88	4	65	13	20	11	55	1.68
48624825--48624854	15	2.0	15	93	0	51	70	0	3	26	1.03
48626659--48626692	17	1.9	18	88	5	52	35	23	0	41	1.55
48627335--48627396	33	1.9	34	84	12	87	64	4	0	30	1.14
48634072--48634105	17	1.9	18	88	5	52	35	23	0	41	1.55
48634781--48634823	13	3.3	13	83	9	61	60	0	0	39	0.97
48635201--48635244	18	2.6	18	86	13	58	70	4	11	13	1.31
48635293--48635333	19	2.2	19	90	0	64	29	7	0	63	1.21
48635836--48635875	14	2.9	14	82	17	57	30	0	0	70	0.88
48636107--48636152	14	3.2	14	84	3	56	84	0	4	10	0.75
48636108--48636147	7	5.7	7	85	8	55	85	0	2	12	0.71
48638556--48638630	31	2.5	30	82	4	87	40	2	6	50	1.43
48638563--48638625	31	2.0	31	87	0	90	38	3	7	50	1.47
48643090--48643143	16	2.9	19	71	23	53	50	7	1	40	1.41
48646110--48646155	23	1.9	24	82	8	58	28	19	2	50	1.60
48646688--48646906	46	4.8	46	93	2	359	29	23	9	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48651299--48651359	23	2.6	24	71	19	58	32	0	4	62	1.17
48659790--48659907	33	3.6	33	78	11	134	40	14	9	35	1.78
48662961--48663042	26	3.0	27	75	12	87	43	1	2	52	1.22
48663049--48663232	37	4.8	38	65	17	101	44	1	7	46	1.39
48663096--48663130	18	2.0	17	88	5	52	45	0	0	54	0.99
48663215--48663249	18	2.0	17	88	5	52	45	0	0	54	0.99
48663454--48663488	18	2.0	17	88	5	52	45	0	0	54	0.99
48663043--48663982	120	7.9	120	98	0	1778	44	1	6	47	1.38
48663574--48663608	18	2.0	17	88	5	52	45	0	0	54	0.99
48663694--48663728	18	2.0	17	88	5	52	45	0	0	54	0.99
48663814--48663848	18	2.0	17	88	5	52	45	0	0	54	0.99
48663934--48663984	18	3.0	18	78	18	56	49	0	0	50	1.00
48663934--48663986	15	3.2	16	82	15	56	47	0	0	52	1.00
48663947--48663988	16	2.7	15	88	7	57	52	0	0	47	1.00
48664210--48664245	16	2.2	16	100	0	72	38	36	0	25	1.56
48664400--48664484	9	9.4	9	78	0	98	43	20	9	27	1.82
48664400--48664484	18	4.7	18	85	5	109	43	20	9	27	1.82
48670193--48670235	22	2.0	21	82	13	52	39	2	4	53	1.34
48671772--48671811	2	20.0	2	100	0	80	50	0	50	0	1.00
48672636--48672671	2	18.0	2	100	0	72	0	50	0	50	1.00
48677968--48678005	20	1.9	20	89	10	60	36	5	5	52	1.47
48678254--48678329	39	2.0	38	94	2	134	30	26	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48681565--48681599	18	1.9	18	88	11	54	34	5	0	60	1.21
48687531--48687580	10	4.9	10	82	9	57	38	2	4	56	1.30
48701630--48701666	14	2.5	15	86	4	58	48	5	0	45	1.25
48702056--48702106	27	1.9	26	84	11	68	49	3	5	41	1.45
48711787--48711843	27	2.1	27	100	0	114	43	10	17	28	1.82
48713498--48713522	13	1.9	13	100	0	50	8	32	8	52	1.60
48714359--48714385	13	2.1	13	100	0	54	29	14	18	37	1.91
48716758--48716799	15	2.9	15	82	10	52	47	0	0	52	1.00
48720571--48720612	22	1.9	22	85	9	59	23	28	28	19	1.98
48721930--48721954	7	3.6	7	100	0	50	28	0	12	60	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211