genome.fa.s21.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  133  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42197068--42197146	27	2.9	27	77	7	106	25	13	36	24	1.92
42197068--42197172	54	1.9	54	92	0	174	28	12	33	25	1.92
42197056--42197154	27	3.7	27	77	5	101	30	14	33	22	1.93
42197072--42197208	54	2.5	54	83	0	157	30	11	30	27	1.92
42197218--42197288	27	2.7	27	80	2	81	35	19	22	22	1.96
42197255--42197359	54	2.0	54	84	1	140	35	20	24	20	1.96
42197242--42197342	27	3.8	26	71	10	69	32	18	26	21	1.97
42205499--42205536	13	2.9	13	85	11	51	71	26	0	2	1.00
42205499--42205530	14	2.3	15	89	10	50	68	28	0	3	1.04
42206784--42206913	27	4.7	27	81	7	122	26	27	13	33	1.93
42213376--42213429	19	2.9	19	83	2	74	51	5	14	27	1.64
42215682--42215746	27	2.4	27	82	5	69	29	16	24	29	1.97
42218758--42218789	5	6.4	5	100	0	64	62	0	0	37	0.95
42219061--42219387	159	2.0	159	85	4	433	35	10	13	41	1.78
42223519--42223627	51	2.1	52	94	1	193	43	11	7	37	1.70
42227433--42227472	20	2.0	20	90	0	62	27	10	12	50	1.72
42227418--42227484	34	1.9	35	90	3	109	31	8	13	46	1.74
42227571--42227609	20	2.0	20	94	0	69	48	2	0	48	1.15
42231014--42231063	25	2.0	25	84	0	64	62	2	32	4	1.25
42232222--42232284	32	2.0	31	87	3	90	49	6	11	33	1.64
42236459--42236529	29	2.4	29	85	4	79	50	12	14	22	1.76
42254129--42254847	44	16.3	45	74	6	574	28	16	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42254129--42254624	264	1.9	263	87	1	724	28	16	25	30	1.97
42254416--42254817	133	3.0	130	85	4	491	28	15	25	29	1.96
42254880--42254992	50	2.3	50	79	3	120	26	19	23	30	1.98
42267539--42267605	25	2.7	26	93	4	111	26	20	26	25	1.99
42276479--42276591	57	2.0	57	94	0	199	31	12	23	31	1.92
42278118--42278166	20	2.5	19	80	9	55	26	12	6	55	1.60
42279325--42279352	14	2.0	14	100	0	56	42	7	7	42	1.59
42282931--42282959	15	2.0	15	93	6	51	48	20	0	31	1.50
42284448--42284509	27	2.3	27	86	5	81	24	22	33	19	1.97
42288095--42288134	16	2.5	16	91	0	71	20	5	17	57	1.58
42288879--42288914	2	18.0	2	100	0	72	50	0	50	0	1.00
42295974--42296032	30	1.9	31	86	3	84	62	1	5	30	1.26
42301749--42301801	22	2.4	22	75	15	56	62	3	0	33	1.13
42302259--42302298	17	2.2	18	86	8	55	25	0	2	72	0.97
42306639--42306717	39	2.0	39	100	0	158	40	22	5	31	1.76
42310752--42310816	5	13.4	5	75	18	66	40	1	0	58	1.07
42310752--42310816	9	6.7	10	78	15	66	40	1	0	58	1.07
42322302--42322341	14	2.9	14	80	0	53	27	22	25	25	2.00
42329493--42329549	28	2.0	28	93	0	96	28	14	14	43	1.83
42335659--42335688	14	2.1	15	93	6	53	73	0	6	20	1.05
42337058--42337182	24	5.3	24	68	18	77	32	6	4	56	1.46
42337068--42337136	23	2.9	23	81	10	86	31	5	4	57	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42337075--42337202	69	1.9	66	81	12	152	33	7	3	55	1.45
42337072--42337296	24	9.7	23	70	16	128	33	6	5	53	1.51
42337106--42337227	45	2.7	46	81	10	135	34	7	4	54	1.48
42337144--42337296	69	2.2	70	78	8	161	34	5	5	53	1.49
42340684--42340721	6	6.2	6	90	3	58	0	60	0	39	0.97
42340686--42340721	18	2.0	18	100	0	72	0	61	0	38	0.96
42340787--42340836	25	2.0	25	92	0	82	4	36	4	56	1.37
42342430--42342469	13	3.0	13	83	16	55	30	2	2	65	1.19
42342659--42342733	22	3.3	23	81	9	91	38	4	2	54	1.33
42342996--42343027	12	2.7	12	95	0	55	18	9	0	71	1.12
42347227--42347265	9	4.3	9	83	9	53	89	7	0	2	0.56
42347227--42347252	10	2.6	10	100	0	52	92	7	0	0	0.39
42347226--42347265	17	2.3	17	91	4	62	87	10	0	2	0.63
42347500--42347570	5	14.8	5	81	15	80	81	0	18	0	0.69
42347501--42347568	8	8.9	8	81	15	81	80	0	19	0	0.70
42347500--42347570	13	5.7	13	80	18	80	81	0	18	0	0.69
42347501--42347576	8	9.1	8	79	12	64	80	0	18	1	0.79
42348956--42349295	44	7.8	43	69	10	179	31	20	21	26	1.98
42348968--42349335	131	2.8	130	90	0	592	30	22	20	26	1.98
42349432--42349743	173	1.8	173	91	0	516	30	16	23	29	1.96
42349681--42349999	147	2.2	147	81	4	349	31	18	20	30	1.96
42351921--42351960	13	3.0	13	83	16	55	30	2	2	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42352166--42352225	22	2.9	21	82	7	68	36	1	3	58	1.25
42352490--42352521	12	2.7	12	95	0	55	18	9	0	71	1.12
42355021--42355053	12	2.8	12	90	4	50	42	33	18	6	1.75
42356087--42356139	21	2.5	21	90	0	79	32	37	7	22	1.82
42357327--42357386	26	2.3	27	91	2	104	40	3	1	55	1.27
42357443--42357519	27	2.9	27	92	0	127	24	22	31	22	1.98
42358068--42358163	19	5.2	19	81	5	124	39	11	0	48	1.39
42358068--42358163	37	2.6	37	94	0	165	39	11	0	48	1.39
42358232--42358396	82	2.0	82	98	0	321	38	6	10	45	1.63
42358480--42358543	19	3.4	19	73	4	76	50	1	12	35	1.50
42358535--42358587	22	2.4	21	75	9	52	52	7	0	39	1.30
42358883--42358974	27	3.4	27	92	1	148	51	0	8	40	1.33
42359708--42359741	17	2.0	17	88	0	50	52	0	0	47	1.00
42359987--42360024	2	19.0	2	100	0	76	50	0	0	50	1.00
42367575--42367599	5	5.0	5	100	0	50	80	0	0	20	0.72
42368073--42368222	53	2.7	54	85	9	205	44	14	8	34	1.74
42380927--42380975	25	2.0	25	83	0	62	34	14	12	38	1.83
42382008--42382042	12	2.8	13	86	4	54	45	17	8	28	1.77
42383710--42383741	17	1.9	17	93	6	57	50	3	3	43	1.33
42390716--42390813	35	2.8	35	92	1	160	20	12	29	37	1.89
42394664--42394790	43	3.0	41	82	10	157	30	25	17	26	1.97
42398357--42398458	50	2.0	50	98	0	195	46	16	13	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42399817--42399858	21	2.0	22	85	4	59	38	21	7	33	1.81
42401930--42402046	43	2.7	43	83	7	141	29	24	19	25	1.98
42404756--42404968	40	5.4	40	88	1	295	45	27	15	12	1.82
42404756--42404968	80	2.7	80	90	1	340	45	27	15	12	1.82
42412016--42412064	25	2.0	25	83	0	62	46	10	4	38	1.57
42416909--42416933	2	12.5	2	100	0	50	52	0	0	48	1.00
42420274--42420324	24	2.1	24	100	0	102	29	37	0	33	1.58
42422212--42422242	9	3.4	9	90	0	53	25	12	22	38	1.90
42422210--42422252	18	2.3	18	92	4	68	32	13	18	34	1.90
42425143--42425170	6	4.7	6	100	0	56	14	0	35	50	1.43
42433946--42434046	33	3.4	32	70	30	105	44	16	7	30	1.77
42433902--42434055	56	2.7	57	90	6	251	44	15	9	30	1.77
42438376--42438504	43	3.0	42	74	10	127	23	17	27	31	1.97
42441312--42441349	18	2.2	18	86	13	53	65	7	0	26	1.19
42459184--42459462	28	9.8	28	79	6	256	56	8	12	22	1.62
42459180--42459462	57	4.9	57	80	6	275	56	8	13	22	1.63
42460272--42460314	22	2.0	22	86	9	61	53	2	23	20	1.57
42462497--42462547	17	2.8	19	82	11	70	56	5	5	31	1.47
42467045--42467192	79	1.9	79	89	0	233	29	10	14	45	1.78
42471014--42471061	3	15.7	3	86	4	60	60	0	6	33	1.22
42473298--42473639	51	6.7	50	81	6	352	28	15	26	29	1.96
42473298--42473636	102	3.3	101	87	2	441	28	15	26	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42473293--42473639	153	2.3	152	83	3	430	28	15	25	29	1.96
42476034--42476061	2	14.0	2	100	0	56	0	50	0	50	1.00
42479502--42479540	3	13.0	3	100	0	78	0	33	0	66	0.92
42484241--42484473	65	3.5	65	90	4	369	55	6	12	26	1.60
42489291--42489352	29	2.1	29	82	5	72	43	8	0	48	1.32
42490821--42490845	6	4.2	6	100	0	50	52	16	0	32	1.44
42494509--42494554	25	1.9	24	86	8	67	28	8	6	56	1.54
42496572--42496597	4	6.5	4	100	0	52	76	0	0	23	0.78
42502726--42502762	3	12.3	3	94	0	65	32	37	0	29	1.58
42516816--42516851	19	1.9	19	88	5	56	44	0	2	52	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211