genome.fa.s21.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  107  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33434966--33435010	19	2.3	20	92	3	74	48	4	6	40	1.49
33435756--33435797	20	2.0	20	86	9	57	45	4	16	33	1.69
33450835--33450876	22	1.9	22	90	0	66	38	14	9	38	1.78
33463829--33464076	136	1.8	136	82	3	320	31	26	22	20	1.98
33467044--33467068	8	3.1	8	100	0	50	24	0	12	64	1.27
33485367--33485559	50	3.7	50	81	4	197	25	20	28	24	1.99
33485811--33485859	20	2.5	20	75	15	57	57	6	22	14	1.59
33487042--33487084	20	2.1	21	87	8	63	32	4	2	60	1.30
33490784--33490823	19	2.0	20	90	4	64	32	10	5	52	1.56
33493706--33493745	20	2.0	21	90	5	64	62	10	0	27	1.27
33495808--33496251	146	2.9	148	81	12	460	39	10	4	44	1.60
33517560--33517613	26	2.1	26	86	6	74	24	16	22	37	1.94
33517593--33517875	27	10.5	27	85	6	328	20	18	18	42	1.90
33517581--33517875	81	3.7	80	82	5	362	21	18	19	41	1.91
33536767--33537067	27	11.1	27	87	3	383	42	16	17	23	1.89
33537270--33537369	26	3.8	26	80	5	121	16	22	22	40	1.91
33537327--33537377	26	2.0	26	92	0	84	17	19	21	41	1.91
33537476--33537585	30	3.8	28	81	9	130	22	25	21	30	1.99
33539556--33539802	27	9.2	26	80	4	199	44	18	16	21	1.87
33539556--33539788	81	2.9	80	80	3	234	44	19	15	20	1.87
33539567--33539802	54	4.4	54	81	4	235	44	18	16	21	1.87
33539975--33540064	26	3.5	26	80	3	92	17	21	20	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33540185--33540287	30	3.5	29	88	5	145	20	26	25	28	1.99
33540818--33540895	39	2.0	39	87	0	111	28	3	23	44	1.70
33543747--33543778	12	2.7	12	100	0	64	50	0	6	43	1.27
33548788--33548884	42	2.3	42	83	1	122	32	23	15	27	1.95
33549973--33549997	13	1.9	13	100	0	50	40	24	4	32	1.73
33552656--33552734	20	4.1	19	69	9	61	18	26	13	40	1.89
33555459--33555515	25	2.3	25	81	0	69	33	19	24	22	1.97
33557236--33557278	18	2.4	17	77	11	50	25	9	4	60	1.47
33557374--33557423	25	2.0	25	84	7	66	26	0	14	60	1.34
33559478--33559509	16	2.0	16	93	0	55	31	0	9	59	1.29
33570816--33570887	36	2.0	36	97	0	135	48	13	12	25	1.78
33570910--33570969	25	2.4	25	77	20	72	61	1	1	35	1.16
33570937--33570978	18	2.3	18	84	8	50	64	0	4	30	1.14
33581649--33582037	50	7.7	50	84	4	444	28	19	28	23	1.98
33591431--33591459	3	9.7	3	100	0	58	65	0	34	0	0.93
33605208--33605394	50	3.6	50	78	7	151	24	29	18	27	1.98
33605265--33605394	50	2.5	50	85	9	154	24	30	19	25	1.98
33613093--33613442	51	6.9	51	77	5	305	30	14	24	30	1.95
33613306--33613433	50	2.5	51	84	3	161	32	15	21	30	1.94
33624719--33624762	23	1.9	23	90	0	70	40	0	45	13	1.44
33624726--33624772	23	2.0	23	91	0	76	42	0	40	17	1.49
33625829--33625896	33	2.1	33	94	0	118	19	10	17	52	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33640392--33640433	22	1.9	22	90	0	66	30	30	11	26	1.92
33642151--33642227	20	3.7	21	75	10	77	10	36	27	25	1.89
33668973--33669213	50	4.9	50	80	2	245	26	21	28	22	1.99
33673941--33674226	50	5.7	50	86	1	369	24	30	19	25	1.98
33673941--33674226	99	2.9	100	87	2	396	24	30	19	25	1.98
33673941--33674223	149	1.9	150	89	0	442	23	30	19	26	1.98
33678824--33679114	50	5.8	50	84	2	327	28	21	27	22	1.99
33685755--33685797	22	2.0	21	86	4	59	48	2	2	46	1.27
33706041--33706079	19	2.1	19	85	9	53	56	0	15	28	1.40
33710638--33710692	25	2.2	25	83	0	65	21	16	25	36	1.94
33714394--33714571	27	6.6	27	81	5	189	26	14	28	29	1.95
33726250--33726377	50	2.6	50	84	2	159	25	24	30	19	1.98
33733484--33733552	32	2.2	32	91	0	111	31	20	8	39	1.83
33734025--33734075	26	2.0	26	92	0	84	41	23	17	17	1.90
33734286--33734619	27	12.4	27	83	7	319	18	18	20	42	1.89
33734286--33734619	81	4.1	82	81	8	371	18	18	20	42	1.89
33736450--33736593	68	2.1	70	83	6	177	44	16	9	29	1.80
33736951--33737090	41	3.4	41	89	0	190	33	22	18	25	1.97
33737681--33737787	6	17.7	6	96	1	196	51	14	0	33	1.43
33745157--33745303	41	3.6	41	87	1	215	31	23	19	25	1.98
33746960--33747121	69	2.3	70	83	5	186	27	20	22	28	1.99
33747025--33747452	221	1.9	223	87	4	627	25	20	25	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33747025--33747452	110	3.9	110	83	5	517	25	20	25	28	1.99
33747347--33747525	73	2.5	73	84	3	218	27	21	24	26	1.99
33747418--33747769	114	3.1	114	83	3	431	26	21	24	27	1.99
33747442--33747769	113	2.9	113	85	1	415	27	21	24	26	1.99
33747293--33747638	187	1.9	187	84	3	473	26	20	24	28	1.99
33748026--33748077	16	3.5	15	81	7	61	15	1	50	32	1.55
33748029--33748071	23	2.0	22	90	9	70	16	2	53	27	1.55
33748449--33748484	19	1.9	18	88	5	54	80	0	2	16	0.83
33763764--33763790	6	4.5	6	100	0	54	14	0	37	48	1.45
33764700--33764741	19	2.1	19	86	8	57	14	50	0	35	1.43
33773044--33773776	106	6.9	106	87	0	1027	32	18	17	30	1.94
33773050--33773772	318	2.3	318	91	1	1171	32	18	17	30	1.95
33774277--33774317	18	2.4	16	84	11	55	85	0	4	9	0.73
33775778--33776327	44	12.9	41	72	11	399	25	21	22	30	1.99
33775817--33776315	85	5.8	84	72	10	332	25	22	22	29	1.99
33775738--33776328	129	4.6	129	92	0	934	25	21	22	30	1.99
33787567--33787973	106	3.9	106	88	1	568	33	18	18	30	1.94
33792666--33792709	14	3.0	15	84	12	56	15	40	0	43	1.47
33793832--33794018	23	8.2	23	79	9	168	14	15	21	48	1.80
33793832--33794018	46	4.1	46	79	6	209	14	15	21	48	1.80
33793832--33794001	69	2.5	69	80	7	209	12	15	21	49	1.78
33800962--33801032	35	2.0	35	97	0	133	30	39	8	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33803732--33804022	40	7.3	40	82	2	334	19	29	16	34	1.93
33803737--33803880	20	7.2	19	64	17	60	18	32	15	32	1.93
33803954--33804018	20	3.2	20	71	0	67	16	35	16	30	1.92
33803744--33804024	119	2.4	119	86	1	393	19	29	16	34	1.94
33808668--33808720	20	2.7	20	73	5	54	15	33	16	33	1.90
33808666--33808880	40	5.4	40	75	8	143	16	29	16	37	1.91
33808666--33808879	79	2.7	80	75	6	220	16	29	16	37	1.91
33820271--33820322	21	2.5	20	85	14	70	71	3	3	21	1.18
33830049--33830237	51	3.7	50	74	6	184	31	27	15	25	1.95
33830051--33830235	101	1.8	101	87	3	273	31	26	15	25	1.96
33845994--33846031	18	2.1	18	85	9	51	52	7	15	23	1.69
33849153--33849263	40	2.8	37	83	12	134	35	26	22	16	1.95
33849337--33849632	41	7.2	41	83	0	349	21	19	29	29	1.98
33850027--33850066	15	2.7	15	92	3	64	27	0	35	37	1.57
33850074--33850145	34	2.1	34	97	0	135	22	0	44	33	1.53
33850043--33850113	21	3.4	21	75	7	63	23	1	38	36	1.64
33850175--33850205	15	2.0	16	93	6	55	19	0	38	41	1.51
33850183--33850244	27	2.3	27	91	0	97	14	3	43	38	1.62
33850084--33850264	7	25.3	7	70	17	54	22	1	41	35	1.61
33854482--33854711	43	5.4	42	80	7	187	26	18	25	30	1.98
33854482--33854711	86	2.7	85	80	9	236	26	18	25	30	1.98
33867970--33868155	50	3.6	51	78	5	151	26	19	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33875484--33875675	50	3.7	50	74	9	145	27	20	27	25	1.99
33875878--33875916	20	2.0	20	90	10	62	56	5	23	15	1.59
33881860--33881947	42	2.1	42	97	0	167	40	14	6	37	1.73
33884209--33884254	22	2.1	22	100	0	92	45	4	17	32	1.68
33892284--33892382	23	4.3	23	89	0	153	20	20	25	34	1.96
33892284--33892382	46	2.2	46	94	0	171	20	20	25	34	1.96
33894237--33894408	45	3.9	44	87	4	197	33	27	16	22	1.96
33894237--33894413	90	2.0	88	86	2	246	32	27	16	22	1.96
33894280--33894417	45	3.1	45	88	4	206	32	27	17	22	1.96
33896233--33896290	22	2.6	22	84	7	73	43	17	3	36	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211