genome.fa.s21.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  131  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41508494--41508535	9	4.8	9	94	2	68	57	11	0	30	1.35
41508525--41508649	25	5.3	24	76	14	136	47	13	0	39	1.43
41508527--41508659	69	1.9	69	100	0	266	48	12	0	38	1.41
41509078--41509117	18	2.2	18	90	0	62	42	7	30	20	1.79
41509768--41509792	7	3.6	7	100	0	50	60	12	0	28	1.32
41509963--41510000	20	1.9	20	84	10	51	55	7	2	34	1.43
41510894--41510936	11	3.8	12	81	6	54	58	0	0	41	0.98
41513463--41513568	44	2.4	44	91	1	167	42	29	7	20	1.80
41513839--41513882	14	3.1	14	90	0	70	15	9	54	20	1.68
41532997--41533036	9	4.4	9	87	0	53	40	25	7	27	1.82
41533165--41533208	18	2.4	18	92	0	70	11	0	47	40	1.39
41535367--41535717	178	2.0	177	95	0	639	37	11	23	27	1.89
41538655--41538707	25	2.1	26	85	3	72	39	9	13	37	1.77
41542469--41542529	26	2.3	26	85	0	86	24	18	14	42	1.88
41542543--41542599	25	2.3	25	87	0	78	24	22	15	36	1.94
41542481--41542658	25	7.1	26	68	13	63	21	19	19	40	1.92
41555581--41555641	22	2.8	22	78	14	63	44	1	3	50	1.28
41557395--41557443	17	2.9	17	79	17	57	65	0	0	34	0.93
41558042--41558084	20	2.3	18	80	11	52	51	0	2	46	1.13
41570632--41570843	52	4.3	50	82	7	229	29	28	16	25	1.96
41574712--41574750	4	9.8	4	94	0	69	28	0	20	51	1.48
41583545--41583597	26	1.9	27	81	11	63	39	18	7	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41584761--41584805	17	2.6	17	96	0	81	17	26	26	28	1.98
41595284--41595318	18	1.9	18	94	0	61	31	34	14	20	1.92
41595331--41595360	15	2.0	15	93	0	51	16	50	13	20	1.78
41595341--41595486	63	2.3	62	78	8	152	18	37	19	23	1.94
41603829--41603890	31	2.0	32	90	3	99	59	0	1	38	1.07
41607859--41607889	5	6.2	5	92	0	53	38	3	0	58	1.15
41612689--41612800	56	2.0	57	87	1	163	43	15	12	28	1.83
41613602--41613636	18	1.9	18	94	0	61	11	0	48	40	1.39
41613934--41614050	24	4.5	25	69	18	71	67	3	0	28	1.12
41615072--41615109	20	1.9	20	88	0	58	36	5	5	52	1.47
41624688--41625172	46	10.6	46	96	0	767	30	23	13	32	1.93
41626917--41626948	12	2.6	13	85	14	50	56	6	0	37	1.25
41630841--41631053	4	53.2	4	100	0	426	50	24	0	24	1.50
41638157--41638436	140	2.0	140	94	1	490	34	14	13	38	1.85
41638615--41638652	19	2.0	19	85	10	51	21	2	5	71	1.19
41638855--41638910	27	2.1	27	100	0	112	26	17	19	35	1.94
41639039--41639107	27	2.6	27	83	0	93	17	33	31	17	1.93
41639159--41639243	28	3.0	28	75	14	86	67	0	31	1	0.99
41639151--41639283	34	3.7	37	84	10	161	66	0	32	1	1.01
41639161--41639271	24	4.6	23	72	20	84	67	0	30	1	1.01
41639608--41640384	159	4.9	151	73	13	629	49	8	11	30	1.68
41639608--41640384	317	2.4	315	92	3	1270	49	8	11	30	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41645555--41645600	3	15.3	3	100	0	92	67	0	0	32	0.91
41645983--41646047	27	2.4	27	94	0	112	18	29	32	20	1.96
41649725--41649795	18	3.9	18	73	10	65	66	1	5	26	1.22
41655512--41655650	51	2.7	51	80	5	147	32	28	17	21	1.96
41655577--41655759	86	2.1	87	79	8	194	31	25	16	26	1.97
41655667--41655937	51	5.3	50	81	7	280	30	25	15	28	1.96
41655700--41655933	102	2.3	102	95	0	414	31	26	14	27	1.95
41660530--41660555	4	6.5	4	100	0	52	0	0	23	76	0.78
41660577--41660622	23	2.0	23	83	8	58	39	10	17	32	1.84
41674431--41674505	35	2.1	35	92	0	123	28	4	33	34	1.76
41676154--41676185	13	2.5	13	94	0	55	31	0	12	56	1.37
41676280--41676521	50	4.7	50	86	4	297	26	24	29	19	1.99
41676280--41676529	100	2.4	103	88	6	364	26	24	29	20	1.99
41677936--41678019	28	3.0	28	82	6	107	36	15	22	25	1.93
41680694--41680831	68	2.0	68	85	8	188	50	7	2	39	1.42
41680686--41680790	20	5.7	18	68	22	58	50	6	1	40	1.39
41691518--41691562	22	2.0	22	87	8	65	31	2	26	40	1.68
41696466--41696510	22	2.1	21	84	12	56	62	2	6	28	1.33
41696954--41697000	18	2.6	18	79	0	58	27	0	2	70	0.99
41699347--41699765	108	3.9	109	91	4	677	29	17	19	33	1.95
41703768--41703837	21	3.1	22	74	12	63	74	7	10	8	1.23
41703756--41703850	44	2.1	45	86	5	131	73	6	10	9	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41705506--41706351	86	9.8	86	94	1	1188	27	21	24	25	2.00
41705506--41706743	172	7.2	171	85	7	1255	27	22	24	25	2.00
41706119--41706345	44	5.2	44	67	16	173	23	21	26	27	1.99
41706150--41706377	45	5.2	45	65	16	134	28	21	25	25	1.99
41706320--41706461	70	2.0	70	94	0	248	32	23	20	23	1.98
41706071--41706710	334	1.9	334	90	0	1030	27	23	24	24	2.00
41706231--41706710	158	2.9	164	85	5	621	28	23	24	24	2.00
41706390--41706750	88	4.1	88	89	1	539	27	22	24	24	2.00
41706144--41706636	246	2.0	246	91	0	806	28	22	24	24	2.00
41706392--41706710	44	7.2	44	67	16	158	28	23	24	23	2.00
41706756--41706875	44	2.7	45	76	6	120	32	16	20	30	1.95
41709049--41709467	108	3.9	109	90	4	659	29	16	19	33	1.94
41709897--41709940	22	2.0	22	81	0	52	34	11	0	54	1.36
41711569--41711700	60	2.2	60	81	0	147	49	15	13	21	1.79
41711599--41711731	31	4.4	31	73	7	101	45	14	17	23	1.85
41719332--41719404	3	24.7	3	94	2	130	64	0	1	34	1.02
41720536--41720576	19	2.2	19	95	0	73	43	12	4	39	1.63
41724243--41724335	42	2.2	43	87	9	131	50	11	4	33	1.59
41724362--41724409	23	2.0	24	92	4	80	41	10	4	43	1.58
41725211--41725235	2	12.5	2	100	0	50	0	0	52	48	1.00
41725470--41725496	7	3.9	7	100	0	54	85	0	0	14	0.61
41732999--41733047	20	2.7	18	77	22	57	51	4	2	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41742559--41742608	25	2.0	26	84	11	68	20	2	4	74	1.08
41747559--41747649	37	2.4	37	83	5	112	16	10	40	31	1.83
41750313--41750384	28	2.6	27	71	18	67	29	2	29	38	1.71
41750499--41750601	20	5.2	20	79	0	89	11	28	20	39	1.87
41750501--41750596	40	2.4	40	76	0	102	12	30	19	37	1.89
41759447--41759524	33	2.4	32	81	8	86	25	8	19	46	1.79
41768923--41768983	16	3.9	15	80	16	70	22	3	0	73	0.97
41768924--41768973	25	1.9	26	88	8	75	22	4	0	74	0.99
41768937--41768990	7	7.7	7	75	22	51	24	5	0	70	1.08
41769823--41770009	102	1.8	102	88	4	286	25	14	27	31	1.95
41775229--41775276	25	1.9	25	86	0	69	37	16	16	29	1.91
41779944--41779969	12	2.2	12	100	0	52	38	0	0	61	0.96
41784693--41784761	16	4.2	16	94	3	120	39	37	0	23	1.55
41784693--41784761	33	2.1	32	94	2	120	39	37	0	23	1.55
41785420--41785460	21	1.9	22	85	14	59	48	7	2	41	1.44
41787238--41787280	18	2.4	18	84	7	52	20	9	4	65	1.40
41791712--41791744	14	2.5	13	90	9	57	15	0	0	84	0.61
41791968--41792009	17	2.4	18	84	11	52	38	0	16	45	1.48
41792540--41792622	42	2.0	42	83	4	105	19	21	16	42	1.89
41799296--41799350	25	2.2	24	78	9	58	54	0	3	41	1.18
41801776--41801818	9	4.9	9	80	2	52	46	4	0	48	1.22
41801777--41801818	13	3.2	13	80	16	50	45	4	0	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41804475--41804518	23	2.0	21	82	8	52	54	0	11	34	1.36
41805044--41805111	30	2.3	30	89	0	100	25	30	20	23	1.98
41815100--41815151	23	2.2	24	83	10	63	65	5	7	21	1.40
41815117--41815213	5	18.0	5	73	19	72	71	3	3	22	1.15
41815108--41815165	23	2.8	21	76	20	59	70	3	6	18	1.24
41815145--41815214	14	4.9	13	74	22	61	72	1	1	24	1.00
41815149--41815211	34	1.9	31	87	9	90	73	1	1	23	1.01
41819641--41819716	37	2.1	37	92	0	125	26	21	18	34	1.96
41825465--41825508	16	2.8	16	92	0	70	50	9	22	18	1.75
41829123--41829175	22	2.4	22	81	6	63	35	0	16	47	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211