genome.fa.s21.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  185  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57259702--57260006	161	1.9	160	86	4	436	46	10	27	15	1.79
57262447--57262496	18	2.6	19	84	6	57	54	12	0	34	1.38
57262766--57262820	26	2.1	26	89	0	83	27	25	7	40	1.82
57262782--57262825	21	2.2	20	83	4	52	29	20	6	43	1.78
57263065--57263122	25	2.2	25	87	6	80	39	0	1	58	1.08
57264325--57264358	14	2.4	14	85	14	52	64	8	14	11	1.49
57271406--57271447	20	2.1	20	86	0	57	47	0	7	45	1.30
57272388--57272415	13	2.2	13	100	0	56	46	7	21	25	1.76
57295964--57296067	41	2.5	41	87	0	136	31	21	19	27	1.97
57303965--57304068	41	2.5	41	85	0	127	31	23	18	26	1.97
57304549--57304602	12	4.2	12	77	13	63	44	9	3	42	1.54
57307144--57307186	13	3.2	14	84	15	56	37	0	11	51	1.39
57307578--57307668	28	3.2	28	73	14	96	20	15	17	46	1.84
57312280--57312322	22	2.0	22	81	9	52	62	6	6	23	1.45
57312281--57312311	14	2.2	14	94	0	53	61	6	6	25	1.45
57327099--57327141	22	2.0	22	81	9	52	62	6	6	23	1.45
57327100--57327130	14	2.2	14	94	0	53	61	6	6	25	1.45
57347294--57347318	6	4.2	6	100	0	50	32	16	0	52	1.44
57352745--57353084	102	3.4	101	87	3	445	29	14	25	30	1.95
57352741--57353074	51	6.6	50	79	5	339	29	15	25	29	1.96
57353276--57353348	37	1.9	38	86	2	103	42	2	23	31	1.68
57355187--57355277	29	3.3	26	78	17	87	29	7	3	59	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57355328--57355435	29	3.8	28	75	16	98	25	4	4	64	1.32
57355336--57355553	26	8.4	25	70	21	121	27	5	5	61	1.40
57355329--57355455	57	2.3	54	81	12	152	27	4	3	63	1.32
57355393--57355562	75	2.3	74	79	8	175	28	6	4	60	1.42
57368852--57368937	43	2.0	43	97	0	163	24	18	22	34	1.96
57375110--57375153	16	2.7	17	86	6	56	52	2	2	43	1.26
57375160--57375346	61	3.1	60	69	17	188	47	6	3	42	1.46
57375116--57375411	59	4.9	58	66	17	167	49	4	3	42	1.39
57375113--57375407	120	2.4	121	92	2	486	49	4	3	42	1.40
57375455--57375598	47	3.1	45	65	23	102	49	4	2	43	1.36
57375348--57375630	91	3.0	93	82	8	306	48	3	3	44	1.35
57375423--57375630	91	2.3	90	89	4	308	47	3	3	45	1.39
57375448--57375590	44	3.2	43	67	16	110	48	3	2	45	1.34
57375473--57375611	47	3.0	47	68	17	137	49	4	2	43	1.34
57379463--57379730	106	2.5	106	95	1	475	41	11	20	26	1.86
57379499--57379663	53	3.1	52	62	16	122	44	9	21	24	1.82
57379552--57379716	53	3.1	53	62	22	119	41	11	19	27	1.86
57380671--57380725	22	2.5	22	88	5	76	41	23	12	21	1.88
57381383--57381421	20	1.9	20	89	5	60	35	2	2	58	1.25
57386683--57386708	7	3.7	7	100	0	52	30	15	0	53	1.42
57386711--57386750	15	2.5	16	88	8	55	37	0	0	62	0.95
57386804--57386847	16	2.7	16	80	16	54	56	2	0	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57389705--57389739	17	2.1	17	89	10	54	57	8	0	34	1.29
57391560--57391960	44	8.9	44	78	9	326	29	19	17	33	1.95
57391553--57392107	89	6.0	89	74	10	377	28	19	17	34	1.95
57391553--57392107	177	3.0	180	76	10	439	28	19	17	34	1.95
57392117--57392161	21	2.1	21	91	0	72	24	26	6	42	1.79
57392138--57392324	102	1.8	102	88	2	286	31	19	16	33	1.93
57395768--57395821	28	1.9	28	84	0	72	22	11	18	48	1.79
57401140--57401174	17	2.1	17	89	10	54	57	8	0	34	1.29
57401352--57401396	3	15.3	3	82	13	58	68	2	0	28	1.01
57401495--57401535	4	10.2	4	85	15	50	78	0	0	21	0.76
57402894--57402985	48	1.9	48	86	4	132	51	1	28	19	1.54
57406540--57406635	31	3.2	30	80	5	104	28	20	14	36	1.92
57418972--57419116	71	2.0	71	83	0	182	30	13	9	46	1.74
57425451--57425487	3	12.3	3	88	0	56	29	2	2	64	1.21
57429877--57430200	51	6.3	50	86	7	416	29	23	14	32	1.94
57429877--57430200	152	2.1	156	88	4	485	29	23	14	32	1.94
57429877--57430200	101	3.1	101	88	5	445	29	23	14	32	1.94
57432156--57432187	10	3.2	10	100	0	64	50	0	0	50	1.00
57433835--57433881	24	2.0	24	87	8	69	31	10	0	57	1.33
57433835--57433872	12	3.2	12	82	10	51	34	10	0	55	1.34
57445569--57446096	44	11.9	44	84	2	673	30	14	24	30	1.95
57445569--57446166	221	2.7	221	83	4	557	30	15	23	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57447613--57447659	24	2.0	24	87	8	69	31	10	0	57	1.33
57447613--57447650	12	3.2	12	82	10	51	34	10	0	55	1.34
57448095--57448264	59	2.9	59	98	0	322	44	9	5	40	1.59
57448275--57448316	16	2.6	16	92	0	66	42	7	2	47	1.43
57448290--57448345	23	2.5	23	82	2	69	44	1	1	51	1.22
57452980--57453051	35	2.1	34	82	5	83	34	4	1	59	1.25
57453024--57453066	22	2.0	22	90	0	68	39	2	0	58	1.11
57454544--57454825	126	2.2	125	85	4	372	28	14	22	34	1.94
57456215--57456257	6	6.8	6	92	7	68	46	16	16	20	1.84
57456235--57456386	45	3.4	44	89	1	223	42	21	17	18	1.89
57457770--57457814	9	5.1	9	82	15	58	53	2	0	44	1.13
57460861--57461354	64	7.7	62	88	5	677	28	0	25	44	1.57
57460879--57461361	29	15.3	29	82	14	507	29	0	25	44	1.59
57460863--57461361	127	3.9	127	90	6	772	29	0	25	44	1.58
57463723--57463771	22	2.2	21	80	16	55	30	0	32	36	1.58
57463726--57463825	52	1.9	52	85	0	137	37	0	30	33	1.58
57463778--57463846	22	3.1	22	93	0	111	40	0	27	31	1.57
57468817--57468880	29	2.2	29	97	2	121	28	6	32	32	1.82
57472027--57472109	29	3.0	26	75	18	71	56	0	2	40	1.12
57472206--57472245	18	2.2	17	86	13	53	30	5	0	65	1.14
57487489--57487538	25	2.0	25	92	0	82	22	14	18	46	1.84
57489101--57489201	50	2.0	50	92	0	166	37	9	18	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57491597--57491723	4	31.8	4	98	0	236	25	1	25	48	1.60
57500934--57501173	9	26.9	9	72	9	154	34	0	19	46	1.50
57500986--57501110	47	2.7	47	89	8	179	32	0	21	46	1.52
57500936--57501151	117	1.8	117	92	0	369	33	0	19	46	1.51
57501523--57501578	28	2.0	28	89	3	87	51	5	3	39	1.42
57501567--57501760	38	5.7	37	68	23	156	50	14	2	32	1.56
57501539--57501753	66	3.3	66	94	0	358	50	13	2	33	1.55
57504330--57504639	124	2.5	124	88	2	460	26	19	18	35	1.95
57504330--57504658	126	2.6	123	86	2	435	26	20	17	35	1.95
57504758--57504803	21	2.1	22	84	11	60	47	0	4	47	1.21
57505358--57505518	7	23.1	7	71	11	89	43	33	1	21	1.61
57505566--57505615	21	2.4	21	75	0	55	44	36	0	20	1.52
57505649--57505691	14	2.9	15	82	6	61	55	27	0	16	1.41
57505636--57505691	29	1.9	29	92	0	94	57	23	0	19	1.41
57505631--57505690	14	4.2	14	76	4	57	58	21	0	20	1.40
57510812--57510851	16	2.5	16	83	0	53	35	5	0	60	1.19
57514515--57514540	13	2.0	13	100	0	52	30	15	15	38	1.88
57515429--57515470	19	2.3	19	84	16	61	71	4	0	23	1.05
57521830--57521877	25	2.0	24	83	4	60	45	31	4	18	1.68
57523239--57523288	26	1.9	26	83	0	64	32	4	8	56	1.47
57526665--57526740	38	2.0	38	97	0	143	35	5	19	39	1.75
57530109--57530163	24	2.3	24	84	6	67	61	1	0	36	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57530567--57530619	27	1.9	27	84	3	70	26	7	11	54	1.62
57532181--57532237	15	3.5	15	71	17	51	50	1	1	45	1.22
57542412--57542545	67	2.0	67	85	1	180	29	29	19	22	1.98
57552271--57552305	18	1.9	18	88	0	52	22	5	2	68	1.24
57552317--57552359	15	2.8	16	86	13	63	34	4	0	60	1.17
57554770--57554908	49	2.8	49	91	0	215	30	26	16	25	1.97
57556088--57556232	23	6.3	23	85	0	200	31	25	20	22	1.98
57556088--57556231	46	3.1	46	92	0	234	31	25	20	22	1.98
57558747--57558772	3	8.7	3	100	0	52	65	0	0	34	0.93
57563124--57563238	42	2.7	42	83	4	142	23	17	26	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211