genome.fa.s21.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  196  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60539080--60539263	85	2.2	84	79	9	205	29	22	21	26	1.99
60539647--60539736	21	4.3	21	82	2	92	4	40	20	35	1.72
60541809--60542148	41	8.3	41	90	0	527	29	20	28	22	1.98
60541809--60542142	82	4.1	82	100	0	668	29	20	28	22	1.98
60544544--60545257	365	2.0	366	92	0	1187	35	20	14	29	1.92
60545273--60545298	4	6.5	4	100	0	52	23	0	0	76	0.78
60545693--60545731	14	2.7	15	84	4	53	43	43	0	12	1.42
60546494--60546956	115	4.0	116	90	2	704	28	24	22	25	1.99
60546869--60547028	73	2.2	72	92	2	257	28	23	21	26	1.99
60548006--60548044	15	2.7	15	88	4	53	51	0	5	43	1.24
60550601--60550644	16	2.6	16	82	13	52	70	2	0	27	0.99
60550614--60550675	31	2.0	32	82	14	78	70	1	4	22	1.14
60555353--60555434	40	2.0	40	100	0	164	34	12	10	42	1.77
60560344--60560382	18	2.2	17	86	13	53	33	0	20	46	1.51
60560608--60560705	23	4.3	23	90	2	162	20	21	26	31	1.98
60560610--60560698	45	2.0	45	95	0	160	19	22	26	31	1.97
60574196--60574248	29	1.9	28	85	11	74	66	1	26	5	1.25
60574234--60574269	10	3.5	10	85	7	54	75	2	11	11	1.16
60576250--60576302	21	2.5	21	87	0	79	24	7	37	30	1.83
60577424--60577456	12	2.8	12	86	4	50	6	18	33	42	1.75
60588317--60588371	27	2.1	26	86	3	74	60	5	3	30	1.37
60591015--60591066	19	2.7	19	93	3	86	71	0	21	7	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60591018--60591067	4	12.8	4	82	4	66	72	0	22	6	1.07
60592258--60592304	24	2.0	24	84	16	62	31	0	19	48	1.49
60592460--60592550	41	2.2	40	88	5	130	28	14	21	35	1.93
60592702--60592759	20	2.9	20	97	0	107	34	10	25	29	1.89
60592987--60593024	20	1.9	20	94	0	67	34	10	26	28	1.90
60597276--60597415	46	3.0	46	94	0	244	28	27	9	35	1.88
60612094--60612127	18	1.9	17	94	5	59	14	0	5	79	0.91
60614042--60614151	43	2.6	42	76	9	123	31	25	18	24	1.97
60618919--60618967	23	2.1	24	81	11	57	24	2	6	67	1.24
60620630--60620693	25	2.5	25	76	20	62	18	6	6	68	1.32
60623210--60623420	42	5.1	41	86	5	250	28	22	19	28	1.98
60623253--60623420	83	2.0	82	89	4	257	29	22	20	28	1.98
60632767--60632832	34	2.0	34	85	5	91	46	0	10	42	1.38
60639421--60639483	21	3.3	19	71	16	51	60	4	0	34	1.18
60639650--60639689	20	2.1	19	85	4	53	25	0	2	72	0.97
60640562--60640678	61	1.9	61	84	8	159	51	12	11	24	1.73
60640567--60640706	61	2.3	59	81	8	140	48	13	13	24	1.78
60642822--60643064	42	5.7	42	77	7	202	25	14	25	33	1.94
60642845--60643116	43	6.3	42	72	13	182	24	14	27	33	1.94
60642831--60643116	129	2.2	128	79	6	317	25	15	26	33	1.95
60643297--60643583	42	6.8	42	89	2	416	32	20	21	24	1.98
60643297--60643670	126	3.0	126	85	2	439	31	20	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60643297--60643685	84	4.6	82	81	6	393	31	20	20	27	1.97
60643738--60643771	14	2.4	14	95	0	59	52	20	8	17	1.71
60643995--60644065	21	3.4	21	80	0	79	2	45	18	33	1.64
60645847--60645886	11	3.7	11	93	3	64	27	27	10	35	1.89
60647812--60647888	7	11.0	7	73	5	57	45	35	1	18	1.58
60647812--60647888	14	5.5	13	73	11	64	45	35	1	18	1.58
60647928--60647977	17	3.0	17	94	2	84	50	16	0	34	1.45
60647999--60648349	113	3.1	111	80	7	402	26	23	19	30	1.98
60648129--60648531	188	2.1	188	93	0	689	27	22	18	32	1.97
60648322--60648747	114	3.7	114	79	4	464	26	23	19	30	1.98
60651125--60651155	16	1.9	16	93	0	53	22	3	22	51	1.62
60651142--60651269	68	1.9	68	91	0	211	21	3	15	60	1.49
60651162--60651293	6	22.7	6	75	3	101	21	3	13	62	1.45
60651484--60651527	16	2.8	16	92	0	70	13	15	18	52	1.75
60651627--60651758	62	2.1	61	88	4	194	24	6	21	47	1.74
60651866--60651895	15	2.0	15	93	0	51	16	6	36	40	1.75
60653682--60653740	26	2.3	26	85	5	75	32	8	10	49	1.67
60653620--60653852	97	2.4	96	80	5	283	26	6	19	48	1.72
60663872--60663914	22	1.9	23	85	4	61	4	6	23	65	1.37
60669898--60669971	37	2.0	38	82	12	91	45	1	4	48	1.29
60670205--60670275	16	4.4	16	83	0	97	29	26	5	38	1.79
60670299--60670376	38	2.0	39	95	2	140	19	2	26	51	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60670468--60670540	34	2.1	34	95	5	130	57	23	5	13	1.57
60670467--60670543	35	2.2	35	90	9	131	57	22	5	15	1.58
60676827--60676852	12	2.2	12	100	0	52	38	38	15	7	1.76
60683191--60683241	26	2.0	26	96	0	93	29	0	5	64	1.17
60686391--60686442	25	2.1	25	96	0	95	34	3	5	55	1.42
60695356--60695630	81	3.3	81	69	17	236	29	20	19	30	1.97
60695324--60695654	171	1.9	171	91	2	540	28	19	20	31	1.97
60695527--60695630	40	2.6	40	73	4	93	30	21	18	29	1.97
60695757--60695891	44	3.1	44	67	8	121	20	25	30	24	1.98
60695733--60696029	88	3.4	88	85	1	373	24	26	23	25	2.00
60697294--60697331	7	5.7	7	87	12	62	15	13	0	71	1.16
60697294--60697328	12	2.7	13	86	13	54	14	11	0	74	1.08
60706496--60706612	41	2.8	42	84	5	150	31	28	19	20	1.97
60709580--60709609	12	2.5	12	94	0	51	60	3	0	36	1.14
60709593--60709627	16	2.2	16	89	0	52	57	0	0	42	0.99
60709576--60709644	28	2.5	28	79	6	70	56	2	1	39	1.23
60711203--60711240	12	3.2	12	88	0	58	28	10	15	44	1.80
60725744--60725781	17	2.2	17	90	0	58	26	34	5	34	1.79
60726480--60726605	25	5.3	24	85	6	134	38	19	24	16	1.92
60727553--60727595	5	8.6	5	100	0	86	58	0	0	41	0.98
60728467--60728512	12	4.0	12	86	11	69	0	19	0	80	0.71
60728467--60728502	18	2.0	18	94	0	63	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60728478--60728519	16	2.6	16	84	0	57	2	19	0	78	0.86
60728571--60728636	7	8.6	7	76	18	53	53	3	1	42	1.25
60728558--60728636	27	2.8	30	76	20	80	49	3	1	45	1.28
60733126--60733188	28	2.3	28	86	8	85	50	0	11	38	1.38
60733141--60733176	18	1.9	19	88	5	56	47	0	11	41	1.39
60734819--60734909	44	2.1	44	81	4	103	27	21	14	36	1.92
60734925--60735911	44	22.3	44	69	9	490	27	23	18	31	1.97
60734925--60735933	133	7.6	130	69	9	493	26	23	18	31	1.97
60734895--60735555	89	7.4	89	83	7	704	27	23	18	31	1.97
60735610--60735979	181	2.1	177	90	3	571	25	24	19	30	1.98
60735610--60735979	89	4.1	89	87	1	508	25	24	19	30	1.98
60737279--60737384	47	2.2	47	83	6	133	12	28	15	44	1.82
60737296--60737387	47	2.0	46	89	2	139	11	26	17	44	1.83
60737299--60737398	47	2.1	47	83	0	119	12	27	16	45	1.82
60742098--60742159	26	2.5	25	76	21	67	48	0	16	35	1.46
60743550--60743593	16	2.8	15	86	10	61	72	13	0	13	1.12
60743550--60743591	20	2.1	20	86	8	59	73	14	0	11	1.09
60745145--60745385	44	5.5	44	68	14	122	26	24	19	29	1.98
60745113--60745383	132	2.1	132	85	2	366	25	23	19	30	1.98
60745163--60745431	132	2.0	132	79	4	283	27	24	19	28	1.98
60745973--60746074	45	2.2	45	76	8	107	51	8	13	25	1.70
60750217--60750250	16	2.1	16	88	0	50	41	17	17	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60764630--60764685	28	2.0	28	100	0	112	39	14	17	28	1.89
60768987--60769073	39	2.2	40	89	6	133	41	1	4	52	1.29
60771850--60771886	16	2.3	16	95	0	65	45	16	2	35	1.61
60773972--60774008	20	2.0	20	84	10	51	67	2	13	16	1.34
60781013--60781051	21	1.9	21	89	5	62	41	2	0	56	1.13
60791590--60791639	26	2.0	25	88	4	73	20	22	20	38	1.94
60791580--60791700	25	4.9	25	77	7	113	19	23	22	34	1.96
60793115--60793140	3	8.7	3	100	0	52	34	0	0	65	0.93
60794704--60794832	62	2.1	62	98	0	249	43	6	19	31	1.75
60794704--60794805	31	3.2	31	71	20	95	43	6	17	32	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211