genome.fa.s21.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  143  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45078863--45078889	14	1.9	14	100	0	54	37	14	3	44	1.63
45093327--45093386	15	3.3	18	68	25	54	26	8	26	38	1.85
45093303--45093408	36	2.9	36	87	0	149	29	10	26	33	1.89
45100658--45100711	28	1.9	28	85	7	74	33	12	9	44	1.75
45101806--45101872	35	2.0	35	85	8	95	32	5	8	52	1.57
45122467--45122515	23	2.1	23	92	0	80	10	32	20	36	1.86
45129733--45129794	30	2.1	30	82	11	74	48	4	0	46	1.23
45130736--45130786	20	2.5	20	83	3	57	50	0	5	43	1.26
45132533--45132592	20	3.0	20	85	4	77	10	31	21	36	1.87
45133100--45133137	13	2.9	13	84	7	51	39	5	21	34	1.76
45143597--45143621	12	2.1	12	100	0	50	16	16	0	68	1.22
45148544--45148581	18	2.1	18	95	0	67	28	0	36	34	1.58
45152076--45152133	29	1.9	29	86	6	80	43	6	20	29	1.78
45152606--45152793	51	3.7	51	79	8	222	29	15	25	30	1.96
45152606--45152688	26	3.2	26	65	27	68	30	12	25	32	1.92
45152606--45152826	101	2.2	102	79	4	232	30	14	24	30	1.94
45163268--45163294	5	5.4	5	100	0	54	81	0	0	18	0.69
45163834--45163883	19	2.7	18	85	11	66	68	4	4	24	1.24
45165031--45165061	5	6.2	5	100	0	62	19	0	0	80	0.71
45165334--45166574	618	2.0	617	95	0	2250	32	18	17	31	1.94
45175166--45175253	45	2.0	45	95	0	158	32	22	18	26	1.97
45175264--45175441	51	3.5	50	77	12	184	31	28	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45175262--45175444	101	1.8	102	89	3	289	31	28	15	25	1.96
45177339--45177369	15	2.1	15	93	0	53	29	0	6	64	1.18
45189684--45189756	38	2.0	37	94	5	130	31	19	9	39	1.84
45196263--45196328	13	5.1	13	74	7	71	36	25	6	31	1.81
45202833--45202961	61	2.2	55	84	13	161	48	13	4	33	1.62
45202866--45202961	28	3.4	28	91	5	149	47	14	3	34	1.60
45202864--45202941	14	5.5	13	69	19	57	48	12	5	33	1.63
45202833--45202961	28	4.5	28	82	10	145	48	13	4	33	1.62
45202882--45202957	14	5.3	15	75	12	79	47	13	2	36	1.56
45207597--45207779	46	4.0	46	88	4	262	27	27	8	36	1.86
45207594--45207781	92	2.0	92	90	2	297	28	26	8	36	1.86
45209002--45209049	17	2.9	17	78	3	53	47	20	2	29	1.61
45211360--45211415	27	2.1	27	82	0	67	37	14	25	23	1.92
45211393--45211441	25	2.0	25	87	0	71	28	12	28	30	1.93
45214793--45214882	29	3.1	29	77	6	85	22	22	33	22	1.97
45214936--45215017	29	2.8	29	79	0	74	20	24	31	23	1.98
45221778--45222261	87	5.6	87	89	1	720	25	23	21	28	1.99
45223498--45223537	7	5.6	7	88	11	55	12	15	0	72	1.12
45223506--45223532	13	2.1	13	100	0	54	14	14	0	70	1.17
45223490--45223541	20	2.6	19	82	14	61	13	15	0	71	1.15
45223978--45224007	12	2.4	13	94	5	53	13	0	13	73	1.10
45223977--45224008	13	2.4	14	85	15	50	12	0	12	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45230795--45230916	37	3.3	36	78	8	113	42	25	13	18	1.87
45233875--45233913	20	2.0	20	84	0	51	58	2	0	38	1.12
45234173--45234234	13	4.8	13	73	0	61	41	20	1	35	1.62
45241997--45242170	88	2.0	86	96	3	323	47	5	11	35	1.64
45242217--45242274	18	3.2	19	70	20	52	53	3	5	37	1.40
45242215--45242307	38	2.5	37	82	8	100	53	3	3	39	1.33
45242204--45242324	32	3.4	37	78	11	112	52	3	2	42	1.31
45245982--45246067	24	3.6	24	80	0	109	36	18	10	34	1.85
45246226--45246293	20	3.4	20	81	4	75	48	20	23	7	1.74
45256343--45257427	298	3.6	298	91	1	1708	28	18	19	32	1.96
45258474--45258499	12	2.2	12	100	0	52	19	26	7	46	1.77
45259164--45259250	37	2.3	37	79	13	90	33	21	2	42	1.66
45268368--45268406	20	2.0	20	89	0	60	41	2	0	56	1.13
45270658--45270693	18	2.0	18	100	0	72	33	27	11	27	1.91
45273972--45274086	21	5.5	21	89	2	135	46	16	21	14	1.83
45273961--45274088	42	3.1	43	80	13	151	47	16	21	14	1.82
45280366--45280912	278	2.0	278	95	0	995	31	21	16	31	1.95
45281249--45281288	16	2.4	16	91	4	62	72	7	0	20	1.08
45283044--45283089	9	5.1	9	89	0	74	47	13	8	30	1.72
45301618--45301656	19	2.1	19	95	0	69	20	28	17	33	1.96
45301543--45301680	44	3.0	44	80	6	132	21	22	18	38	1.93
45301541--45301682	25	5.9	25	77	9	152	21	21	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45301650--45301739	22	4.0	22	75	7	65	18	21	18	41	1.91
45311102--45311286	50	3.7	50	77	6	155	30	21	27	21	1.98
45324665--45325170	252	2.0	252	94	0	897	32	15	14	37	1.88
45325582--45325622	18	2.3	18	80	20	50	73	14	2	9	1.19
45326469--45326907	225	1.9	227	90	2	695	30	17	14	37	1.90
45345310--45345480	27	6.4	27	82	5	195	45	21	16	16	1.86
45346551--45346587	17	2.2	18	80	14	51	43	13	27	16	1.85
45351801--45351879	20	4.0	20	73	12	63	34	12	35	17	1.88
45351777--45351882	40	2.7	40	83	5	117	34	13	33	17	1.89
45358623--45358647	10	2.5	10	100	0	50	76	0	16	8	1.02
45358757--45358941	101	1.8	102	85	3	266	23	16	28	31	1.96
45358753--45358943	51	3.8	51	79	4	208	23	15	29	31	1.95
45359069--45359141	38	1.9	37	86	8	103	42	2	21	32	1.67
45362388--45362494	55	1.9	55	88	0	160	26	19	14	39	1.91
45389223--45389256	16	2.1	16	100	0	68	17	5	52	23	1.66
45392275--45392342	32	2.1	32	86	10	95	47	11	0	41	1.40
45392503--45392535	13	2.6	13	95	4	59	48	12	0	39	1.40
45396403--45396602	50	3.9	50	81	6	206	26	21	29	23	1.99
45401810--45401849	20	2.1	19	85	4	53	62	5	5	27	1.37
45402761--45402810	25	2.0	25	92	0	82	22	22	26	30	1.99
45416569--45416635	9	7.4	10	79	15	58	41	19	10	28	1.84
45416577--45416635	18	3.3	18	87	0	73	40	20	11	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45416568--45416640	27	2.7	27	78	6	85	42	19	10	27	1.84
45416699--45416761	19	3.4	18	79	16	58	22	3	9	65	1.37
45416718--45416756	12	3.3	11	89	10	51	20	0	10	69	1.17
45416787--45416829	18	2.4	18	100	0	86	9	4	44	41	1.57
45418661--45418699	14	2.8	14	84	0	51	33	5	0	61	1.18
45418828--45418856	15	1.9	15	100	0	58	6	13	0	79	0.93
45425538--45425618	25	3.1	25	80	5	72	44	1	17	37	1.57
45425588--45425669	34	2.4	34	85	4	103	42	0	18	39	1.50
45425775--45426162	126	3.1	127	88	4	565	38	15	17	29	1.90
45432504--45432541	19	2.0	19	85	10	51	50	2	5	42	1.39
45441401--45441434	17	2.1	16	88	5	50	70	0	29	0	0.87
45451791--45451907	54	2.2	53	81	7	128	30	19	23	26	1.98
45451810--45451917	54	2.0	54	85	0	144	31	20	21	26	1.98
45454618--45454662	24	1.9	24	82	13	58	55	6	0	37	1.26
45454703--45454743	17	2.3	19	88	12	61	53	2	0	43	1.13
45454719--45454770	26	2.0	26	85	11	70	51	1	1	44	1.23
45455655--45455679	10	2.5	10	100	0	50	28	8	0	64	1.22
45460953--45460979	13	2.1	13	100	0	54	22	7	14	55	1.64
45462792--45462916	26	4.9	25	89	1	169	36	25	16	20	1.94
45462792--45462916	51	2.5	51	85	2	171	36	25	16	20	1.94
45463266--45463312	22	2.1	22	100	0	94	40	36	4	19	1.71
45464584--45464629	21	2.2	21	84	3	58	30	2	2	65	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45466029--45466096	12	5.8	12	73	19	54	47	5	2	44	1.42
45466390--45466422	16	2.1	16	88	5	50	48	3	6	42	1.43
45465926--45466934	251	4.1	251	80	8	976	37	10	7	44	1.66
45466637--45466679	19	2.2	21	80	16	56	48	2	6	41	1.43
45466914--45466949	19	1.9	18	94	5	63	36	5	0	58	1.22
45467315--45467355	19	2.1	20	86	4	57	2	29	0	68	1.03
45472038--45472131	3	30.0	3	81	10	100	28	4	3	63	1.28
45472194--45472250	29	2.0	29	86	6	82	35	3	5	56	1.39
45474768--45474874	30	3.8	28	74	14	85	41	0	4	53	1.28
45474827--45474875	19	2.6	18	78	9	53	44	2	2	51	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211