genome.fa.s21.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  159  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49973412--49973537	63	2.0	63	98	0	243	23	18	17	40	1.91
49976079--49976683	300	2.0	300	97	0	1138	21	19	20	38	1.94
49979046--49979091	12	3.7	13	82	2	51	47	6	17	28	1.72
49979054--49979120	23	2.8	23	82	11	73	49	8	14	26	1.73
49979037--49979182	13	11.1	13	68	17	70	52	8	13	25	1.70
49982121--49982161	22	1.9	22	90	5	66	31	0	7	60	1.24
49983336--49983520	42	4.3	42	81	8	180	29	20	22	27	1.99
49983956--49984000	21	2.1	21	87	0	63	2	44	22	31	1.65
49989580--49990235	27	23.6	27	81	8	631	33	2	12	51	1.52
49989602--49990256	63	11.0	63	78	14	685	34	2	12	51	1.51
49989598--49990249	36	18.4	36	83	7	523	34	2	12	51	1.51
49993259--49993293	14	2.4	15	90	4	54	42	37	0	20	1.52
49996566--49996591	4	6.5	4	100	0	52	0	23	0	76	0.78
49996774--49996839	21	3.0	22	75	4	71	28	4	7	59	1.45
49997512--49997613	40	2.5	40	84	3	134	31	23	22	22	1.98
49997634--49997850	118	1.8	117	82	4	276	29	17	24	28	1.97
49998015--49998054	7	5.7	7	93	0	71	17	0	37	45	1.49
49998003--49998054	14	3.7	14	86	0	68	19	0	34	46	1.50
49998003--49998061	21	2.8	21	87	5	84	20	0	32	47	1.50
49998281--49998366	21	4.2	20	68	14	50	19	1	26	52	1.53
49998308--49998473	7	23.7	7	72	7	86	20	2	30	46	1.63
49998422--49998473	27	1.9	27	96	0	95	15	0	32	51	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49998611--49998689	42	1.9	42	89	2	124	34	16	21	27	1.95
49998992--49999027	16	2.2	16	95	0	63	2	50	13	33	1.57
49999815--49999852	7	5.3	7	96	3	67	47	0	0	52	1.00
49999944--50000026	18	4.6	18	71	7	60	48	14	0	37	1.44
49999993--50000024	9	3.6	9	91	0	55	43	18	0	37	1.51
50005211--50005249	14	2.9	13	85	14	53	58	0	0	41	0.98
50005955--50005994	21	2.0	21	90	5	64	25	20	22	32	1.98
50006618--50006671	9	5.9	9	77	12	56	42	29	7	20	1.79
50008366--50008450	43	2.0	43	100	0	170	23	32	17	25	1.97
50008799--50008850	21	2.5	21	78	6	52	9	42	11	36	1.74
50009701--50009744	21	2.1	21	91	0	70	18	9	25	47	1.77
50014276--50014327	15	3.6	15	80	12	56	44	0	1	53	1.11
50014204--50014443	120	2.0	120	96	1	446	42	2	5	48	1.42
50014405--50014446	15	2.7	16	82	14	52	45	0	2	52	1.13
50014396--50014437	15	2.9	15	82	10	52	47	0	0	52	1.00
50014380--50014695	156	2.0	157	94	0	553	48	5	2	43	1.40
50014548--50014582	18	2.0	17	88	5	52	45	0	0	54	0.99
50014818--50014869	16	3.2	16	86	0	68	40	30	0	28	1.57
50016125--50016202	41	2.0	39	90	7	122	37	3	5	53	1.41
50016503--50016574	7	10.0	7	79	5	81	44	34	0	20	1.52
50016753--50016803	14	3.5	15	77	20	63	37	43	0	19	1.51
50016742--50016825	28	3.0	27	72	11	71	39	36	0	23	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50016793--50016842	22	2.3	22	89	6	75	36	36	0	28	1.58
50017070--50017225	72	2.2	71	87	5	217	32	21	15	30	1.94
50017141--50017415	114	2.5	110	79	5	284	28	20	17	33	1.95
50017446--50017705	114	2.3	113	86	5	364	24	22	20	31	1.98
50022955--50023048	30	3.1	30	92	1	143	25	26	6	41	1.79
50022965--50023042	15	5.2	15	68	11	61	25	24	7	42	1.81
50027625--50027732	15	7.2	15	66	12	69	26	24	6	42	1.78
50027615--50027738	30	4.1	30	92	1	194	26	25	5	41	1.77
50030987--50031025	18	2.2	17	86	13	53	33	0	20	46	1.51
50031130--50031158	8	3.6	8	100	0	58	24	13	27	34	1.93
50031245--50031320	23	3.3	23	96	0	143	21	21	26	31	1.98
50036040--50036068	14	2.0	15	93	6	51	44	0	0	55	0.99
50037583--50037697	57	2.0	57	96	0	212	25	14	17	42	1.87
50037782--50037822	21	2.0	20	85	4	55	29	2	2	65	1.18
50047299--50047443	72	2.0	72	100	0	290	33	31	13	21	1.92
50051693--50051839	12	12.0	12	67	21	56	28	13	9	48	1.74
50058244--50058477	41	5.7	41	91	1	360	28	21	27	22	1.99
50062296--50062329	4	8.5	4	100	0	68	26	0	0	73	0.83
50064118--50064234	19	5.7	21	77	11	75	40	15	6	37	1.74
50064154--50064247	19	4.8	19	84	5	134	37	14	9	38	1.79
50064154--50064247	38	2.4	39	92	3	154	37	14	9	38	1.79
50065594--50065709	13	8.9	13	71	16	71	25	13	11	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50065603--50065709	12	8.4	12	67	19	56	24	13	11	51	1.73
50065589--50065647	28	2.1	29	83	3	75	27	10	8	54	1.63
50071255--50071603	174	2.0	174	92	0	572	32	12	24	30	1.92
50074299--50074365	6	10.7	6	74	15	55	17	1	7	73	1.14
50074304--50074350	24	1.9	25	86	4	69	17	2	8	72	1.19
50074375--50074410	5	7.2	5	100	0	72	0	0	19	80	0.71
50075469--50075544	35	2.1	34	79	9	80	25	19	27	27	1.99
50075837--50075878	18	2.3	19	88	12	70	38	0	16	45	1.48
50080302--50080337	19	1.9	19	88	5	56	44	0	8	47	1.33
50080415--50080712	46	6.6	46	91	2	471	33	16	21	28	1.95
50080415--50080712	91	3.3	91	94	0	519	33	16	21	28	1.95
50084113--50084320	108	1.9	109	84	1	274	30	17	20	31	1.95
50094916--50094985	21	3.3	21	73	15	65	25	22	35	15	1.94
50094949--50094991	21	2.0	21	95	0	77	23	25	34	16	1.95
50096527--50096575	17	2.8	18	78	9	57	28	30	20	20	1.98
50101452--50101662	108	1.9	108	88	2	316	31	18	20	29	1.96
50104629--50104667	19	2.0	20	95	5	71	53	5	25	15	1.62
50104786--50104813	13	2.2	13	100	0	56	39	0	14	46	1.44
50105995--50106045	23	2.2	23	89	0	75	43	21	7	27	1.80
50106421--50106449	2	14.5	2	100	0	58	51	0	48	0	1.00
50114283--50114320	16	2.4	16	91	8	60	18	0	0	81	0.69
50114284--50114351	26	2.4	27	81	16	77	16	4	1	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50117479--50117581	54	1.9	54	90	4	163	36	19	22	21	1.95
50118651--50118694	6	6.8	6	85	14	61	36	18	0	45	1.49
50120521--50120583	5	12.6	5	96	0	99	39	4	0	55	1.21
50121866--50121918	23	2.4	21	90	6	79	24	22	20	32	1.98
50121866--50121950	21	4.0	21	83	4	91	20	22	22	35	1.96
50124554--50124636	3	28.0	3	78	11	55	62	3	6	27	1.35
50128733--50128769	15	2.4	15	95	4	65	27	24	5	43	1.76
50129056--50129110	27	2.0	27	89	0	83	18	27	18	36	1.94
50130813--50130864	26	2.0	26	96	0	95	13	23	34	28	1.92
50130631--50130895	104	2.6	104	90	4	428	17	20	30	30	1.96
50134254--50134297	18	2.4	18	92	3	70	68	4	15	11	1.36
50135532--50135567	18	2.0	18	94	0	63	19	22	19	38	1.93
50154824--50154857	16	2.1	16	88	0	50	38	5	5	50	1.51
50158242--50158278	18	2.0	19	89	5	58	54	0	2	43	1.14
50163317--50163372	19	2.9	18	80	15	58	64	3	3	28	1.27
50170336--50170373	20	1.9	20	88	0	58	28	23	10	36	1.88
50170530--50170556	14	1.9	14	100	0	54	59	0	29	11	1.32
50171461--50171508	3	16.0	3	95	0	87	0	31	0	68	0.90
50171574--50171615	21	2.0	21	90	0	66	23	23	23	28	2.00
50171785--50171841	10	5.6	10	78	17	64	57	1	1	38	1.19
50171785--50171873	20	4.4	19	74	13	72	55	1	5	38	1.31
50171785--50171873	10	8.8	10	72	16	51	55	1	5	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50177199--50177238	21	2.0	21	90	5	64	35	2	2	60	1.24
50177979--50178026	16	3.3	15	86	11	64	52	2	0	45	1.12
50179306--50179343	18	2.1	18	85	14	51	42	0	0	57	0.98
50179834--50179890	25	2.4	24	83	13	66	49	3	0	47	1.18
50189407--50189493	26	3.3	26	93	1	138	41	11	13	33	1.81
50190406--50190434	15	2.0	15	93	6	51	65	0	0	34	0.93
50199307--50199350	22	2.0	21	87	12	63	63	2	0	34	1.07
50199355--50199391	11	3.4	11	96	0	65	54	0	5	40	1.24
50202996--50203065	31	2.2	31	82	5	77	30	27	8	34	1.87
50223478--50223555	25	3.2	25	79	1	86	20	25	20	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211