genome.fa.s21.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  101  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31747856--31747881	10	2.6	10	100	0	52	42	7	0	50	1.31
31750858--31750903	21	2.2	21	88	7	67	54	6	4	34	1.46
31751448--31751605	72	2.2	72	85	2	201	26	24	22	27	2.00
31751648--31751837	74	2.6	74	78	4	215	27	21	22	28	1.99
31752549--31752587	6	6.2	6	88	11	60	17	0	51	30	1.46
31753863--31753978	11	11.4	11	76	20	119	59	0	0	39	1.03
31753850--31754025	39	4.2	39	73	21	142	61	0	1	36	1.06
31753846--31753945	50	2.0	50	90	3	157	59	0	0	41	0.98
31753863--31754017	50	3.1	49	86	7	197	60	0	1	37	1.08
31753852--31754017	90	1.8	90	90	2	271	62	0	1	36	1.06
31753872--31753905	17	2.0	17	100	0	68	58	0	0	41	0.98
31754864--31754908	23	2.0	23	95	0	81	11	17	20	51	1.75
31756156--31756207	25	2.1	25	85	7	70	48	9	3	38	1.54
31756149--31756207	25	2.6	21	71	19	55	47	11	3	37	1.57
31756195--31756288	27	3.2	29	66	26	79	54	12	3	29	1.54
31756276--31756532	9	29.7	9	82	6	291	48	19	0	32	1.52
31760169--31760267	28	3.6	27	81	9	119	31	12	28	28	1.92
31761253--31761696	24	18.5	24	67	15	186	24	12	18	44	1.85
31761253--31761377	47	2.7	47	94	1	225	22	14	19	44	1.86
31761253--31761715	94	5.1	94	84	8	517	24	12	18	43	1.85
31761295--31761458	81	2.0	81	96	0	301	21	14	20	43	1.87
31761258--31761505	128	1.9	128	98	0	478	22	13	19	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31761376--31761715	47	7.2	47	92	1	414	25	12	18	43	1.85
31761378--31761695	25	13.5	25	70	19	157	24	12	18	44	1.84
31766193--31766370	27	6.6	27	83	3	205	26	15	28	29	1.96
31766194--31766349	82	1.9	81	88	3	233	26	15	28	29	1.96
31766190--31766370	82	2.2	81	83	2	229	27	15	27	29	1.96
31774298--31774476	27	6.6	27	82	5	198	26	15	27	30	1.96
31774298--31774476	55	3.3	55	82	5	193	26	15	27	30	1.96
31779547--31779620	28	2.7	27	79	6	85	33	10	28	27	1.90
31780629--31780753	47	2.7	47	96	1	234	21	14	20	44	1.87
31780629--31781091	94	5.1	94	84	8	517	23	12	19	43	1.85
31780718--31780787	34	2.1	34	97	0	131	18	15	22	42	1.88
31780777--31780902	22	5.5	22	79	10	144	23	14	18	43	1.86
31780671--31780834	81	2.0	81	97	0	310	21	14	20	43	1.87
31780634--31780881	128	1.9	128	98	0	478	21	13	20	44	1.86
31780752--31781091	47	7.2	47	91	1	405	25	12	18	43	1.85
31784536--31784604	21	3.3	21	87	0	93	36	15	43	4	1.67
31785098--31785351	127	2.0	126	84	6	334	25	20	20	33	1.97
31785050--31785342	42	7.0	42	83	3	329	26	19	20	32	1.97
31788716--31788750	7	5.1	7	96	3	63	45	14	14	25	1.82
31789268--31793128	552	7.0	552	94	0	6182	42	23	12	21	1.87
31800676--31800715	16	2.6	15	84	7	53	72	0	12	15	1.12
31805266--31805323	24	2.3	26	91	5	93	36	22	22	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31805279--31805408	25	5.2	25	73	9	88	34	23	23	18	1.96
31805316--31805419	25	4.2	25	70	7	86	33	21	27	17	1.95
31805264--31805448	74	2.5	76	78	4	207	34	22	24	18	1.96
31814481--31814594	59	1.9	59	98	0	219	37	1	15	44	1.57
31814544--31814732	97	2.0	97	86	3	265	40	3	16	39	1.65
31815684--31815728	21	2.1	21	87	0	63	4	24	42	28	1.74
31815987--31816029	18	2.4	18	88	0	59	44	9	27	18	1.80
31816102--31816163	30	2.1	30	84	0	79	11	12	43	32	1.79
31817746--31817793	11	4.5	10	82	14	51	47	0	31	20	1.50
31818530--31818809	123	2.3	124	93	2	474	30	15	20	33	1.93
31819397--31819452	25	2.3	25	80	14	64	62	5	0	32	1.18
31819611--31819661	22	2.3	21	83	9	66	39	0	31	29	1.57
31819666--31819712	22	2.1	22	92	0	76	40	0	31	27	1.57
31826138--31826297	41	3.9	41	82	9	184	21	20	28	29	1.98
31826138--31826276	41	3.4	41	87	4	199	20	18	30	30	1.96
31826138--31826340	83	2.5	82	82	8	227	22	20	26	30	1.99
31827315--31827347	14	2.3	15	89	5	50	15	0	45	39	1.46
31827338--31827373	14	2.5	15	86	9	56	22	0	44	33	1.53
31827890--31827955	20	3.3	20	72	19	75	37	9	0	53	1.33
31827890--31827956	19	3.4	19	71	20	66	37	8	0	53	1.32
31827887--31827980	39	2.4	39	98	1	181	40	8	0	51	1.33
31832206--31832679	43	11.1	42	83	4	488	22	16	25	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31832224--31832679	127	3.6	128	84	1	522	22	16	25	35	1.94
31834092--31834126	14	2.5	14	90	0	52	40	8	14	37	1.76
31839450--31839504	25	2.2	26	83	3	67	36	20	20	23	1.95
31851471--31851549	9	9.0	9	78	13	76	46	18	0	34	1.50
31855212--31855336	44	2.9	43	80	9	128	31	26	19	23	1.98
31856574--31856936	175	2.1	175	94	0	627	32	15	19	32	1.93
31860533--31861047	175	3.0	175	89	6	831	29	19	22	27	1.98
31860714--31861045	162	2.0	162	95	0	601	28	19	23	28	1.98
31862458--31862500	16	2.8	15	74	19	52	46	0	4	48	1.22
31868398--31868433	18	2.0	18	89	10	56	13	25	0	61	1.33
31880012--31880198	40	4.6	40	75	9	164	32	27	17	22	1.96
31882073--31882788	358	2.0	358	97	0	1360	31	21	15	31	1.94
31887103--31887280	40	4.4	40	82	9	200	32	29	15	22	1.95
31887103--31887280	81	2.2	81	83	5	216	32	29	15	22	1.95
31889190--31889237	24	2.0	24	87	0	69	16	10	0	72	1.10
31889191--31889243	24	2.2	25	82	3	63	16	7	1	73	1.15
31889316--31889366	22	2.2	23	86	13	70	41	0	3	54	1.19
31889343--31889378	13	2.8	13	86	0	54	41	0	0	58	0.98
31889392--31889433	19	2.2	19	83	8	50	50	0	0	50	1.00
31889478--31889548	21	3.3	21	84	9	81	40	0	1	57	1.07
31889489--31889552	21	3.0	21	86	6	85	42	0	1	56	1.09
31889533--31889572	15	2.7	15	92	3	64	37	0	2	60	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31889670--31889711	19	2.3	19	91	4	68	45	0	16	38	1.48
31889733--31889788	29	1.9	29	88	0	85	60	0	1	37	1.07
31889754--31889778	8	3.1	8	100	0	50	64	0	0	36	0.94
31889964--31889994	7	4.4	7	100	0	62	12	0	0	87	0.55
31897370--31897422	20	2.6	20	77	20	56	62	0	0	37	0.96
31897559--31897615	4	14.5	4	77	17	57	75	1	3	19	1.04
31897578--31897641	24	2.6	25	85	7	96	78	4	3	14	1.04
31897707--31897745	8	4.9	8	87	0	60	48	12	25	12	1.77
31900197--31900227	16	1.9	16	93	0	53	54	0	9	35	1.33
31900888--31901520	115	5.6	114	76	7	579	32	18	22	26	1.97
31900923--31901520	229	2.6	227	80	5	621	31	18	22	26	1.97
31902688--31902868	83	2.2	83	80	7	199	28	18	20	32	1.96
31905215--31905272	23	2.8	22	73	21	61	48	20	0	31	1.50
31905340--31905710	12	30.7	12	63	19	94	52	18	1	28	1.52
31905348--31905683	96	3.6	95	92	3	538	52	18	0	28	1.51
31905385--31905785	9	44.8	9	68	16	106	51	18	0	28	1.53
31905560--31905776	34	6.4	34	77	9	192	49	19	0	29	1.54
31905627--31905789	16	9.6	17	81	10	160	46	21	0	31	1.56
31905576--31905789	25	8.4	26	79	9	196	48	20	0	30	1.56
31905529--31905789	9	30.7	9	75	16	200	48	19	0	30	1.55
31907222--31907306	42	2.0	42	100	0	170	20	21	28	30	1.98
31911271--31911315	21	2.1	21	83	0	54	35	13	46	4	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31911754--31911941	84	2.2	84	82	6	229	38	20	16	25	1.93
31911754--31911945	42	4.6	42	84	2	206	37	20	17	24	1.94
31912093--31912175	30	2.7	31	83	10	100	39	0	8	51	1.32
31912328--31912362	18	2.1	17	89	10	54	48	0	0	51	1.00
31916371--31916439	25	2.8	25	79	0	75	26	26	20	27	1.99
31917102--31917144	21	2.0	21	100	0	86	13	9	18	58	1.62
31925781--31925906	61	2.1	61	81	3	146	36	4	16	42	1.70
31926562--31926638	22	3.6	21	84	5	100	32	25	0	41	1.56
31926610--31926668	30	2.0	30	86	0	82	32	32	0	35	1.58
31926640--31926681	22	1.9	22	90	0	66	33	33	0	33	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211