genome.fa.s21.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  201  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62191519--62191684	42	4.0	42	84	3	190	44	17	22	15	1.86
62203207--62203237	12	2.6	12	100	0	62	77	0	16	6	0.97
62203826--62204057	87	2.7	87	86	0	302	22	21	22	32	1.98
62216803--62216833	12	2.6	12	94	0	53	77	3	16	3	1.03
62217415--62217653	87	2.7	87	84	0	307	23	23	21	32	1.98
62220457--62220488	3	10.7	3	100	0	64	68	0	0	31	0.90
62224374--62224450	22	3.5	22	78	18	79	27	25	1	45	1.61
62224378--62224450	11	6.5	12	73	19	68	28	26	1	43	1.63
62226100--62226667	125	4.5	125	84	2	701	30	22	16	30	1.96
62226100--62226667	252	2.3	249	86	2	753	30	22	16	30	1.96
62236499--62236549	19	2.7	19	87	6	68	41	0	1	56	1.10
62236783--62236833	23	2.2	24	82	6	61	49	0	7	43	1.32
62238152--62238202	25	2.0	25	92	0	84	54	1	3	39	1.30
62238311--62238339	6	4.8	6	100	0	58	65	0	0	34	0.93
62240433--62240509	26	3.2	26	63	30	69	50	11	6	31	1.64
62240449--62240522	21	3.3	22	66	30	57	52	12	5	29	1.60
62240425--62240518	47	2.0	47	100	0	188	51	12	6	29	1.65
62240425--62240499	25	3.1	25	66	30	72	52	12	6	29	1.64
62247413--62247462	24	2.1	24	100	0	100	38	8	24	30	1.84
62252694--62252809	43	2.7	43	80	10	130	18	19	31	31	1.96
62253468--62253502	15	2.3	15	90	9	54	25	0	22	51	1.48
62253760--62254341	47	12.5	47	91	1	931	31	11	15	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62253760--62254314	187	3.0	186	93	0	939	32	11	15	40	1.84
62253761--62254341	280	2.1	279	96	1	1065	31	11	15	40	1.83
62254247--62254335	21	4.0	21	69	18	63	31	12	14	41	1.83
62255832--62256597	44	17.7	43	69	12	428	28	21	22	26	1.99
62255871--62256334	129	3.6	129	95	0	802	28	21	22	27	1.99
62256091--62256604	217	2.4	217	96	0	938	28	22	22	25	1.99
62256308--62256549	129	1.9	129	94	0	430	28	22	22	26	1.99
62255832--62256463	258	2.4	255	83	6	792	28	21	22	27	1.99
62255832--62256696	44	19.8	43	67	12	336	29	21	21	26	1.99
62262091--62262141	21	2.4	22	74	9	52	33	1	1	62	1.17
62267078--62267124	5	9.2	5	90	4	76	40	17	2	40	1.61
62270648--62270688	20	2.1	19	86	13	57	65	0	0	34	0.93
62270968--62271020	27	2.0	28	81	7	65	52	16	1	28	1.54
62273841--62273875	2	17.5	2	93	0	61	0	45	0	54	0.99
62278751--62278789	18	2.1	18	85	4	51	56	0	7	35	1.28
62278815--62278879	13	5.1	13	73	15	55	46	1	1	50	1.20
62280386--62280453	31	2.2	31	89	2	102	45	8	8	36	1.67
62283842--62283876	3	11.7	3	100	0	70	68	0	0	31	0.90
62288090--62288225	73	1.9	73	100	0	272	40	25	5	28	1.79
62288262--62288290	3	9.7	3	100	0	58	68	0	0	31	0.89
62299286--62299351	30	2.2	30	83	0	87	22	18	7	51	1.71
62301958--62302009	23	2.3	23	90	6	79	34	13	9	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62306408--62306459	23	2.3	23	90	6	79	36	13	9	40	1.77
62306723--62307143	84	5.0	84	83	2	452	34	32	15	17	1.91
62309702--62309760	28	2.1	29	90	3	93	32	6	13	47	1.69
62309706--62309768	28	2.2	28	85	5	81	34	9	9	46	1.69
62309812--62309858	23	2.0	22	84	15	60	51	2	0	46	1.13
62309822--62309873	27	1.9	27	84	7	70	48	1	1	48	1.24
62309826--62309869	23	1.9	23	86	9	63	50	2	2	45	1.27
62310665--62311018	196	1.8	196	82	3	462	36	22	12	28	1.91
62316584--62316619	11	3.2	11	96	4	63	16	38	0	44	1.48
62320797--62320888	37	2.5	37	98	0	175	26	18	18	36	1.94
62320852--62321120	46	5.6	46	89	6	349	28	21	14	35	1.93
62320895--62321114	52	4.3	52	87	8	326	27	22	14	35	1.93
62320852--62321120	98	2.8	94	82	12	339	28	21	14	35	1.93
62325212--62325587	124	3.0	124	94	0	635	31	22	15	29	1.95
62328254--62328329	9	8.4	9	82	5	100	40	23	10	25	1.86
62328254--62328329	18	4.2	18	89	0	116	40	23	10	25	1.86
62331118--62331228	31	3.6	31	81	0	132	40	9	1	47	1.47
62331113--62331249	31	4.5	31	77	7	84	43	9	3	43	1.54
62333523--62333583	31	2.0	31	90	0	95	47	9	6	36	1.63
62345465--62345505	21	2.0	21	85	9	57	36	0	0	63	0.95
62352764--62352804	21	2.0	21	90	0	64	19	29	21	29	1.98
62356016--62356124	30	3.3	30	68	20	83	56	3	32	7	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62356065--62356624	93	5.9	90	79	12	581	55	3	32	8	1.48
62356243--62356298	27	2.1	27	86	0	76	64	0	32	3	1.11
62356333--62356364	6	5.3	6	92	0	55	50	0	46	3	1.17
62356249--62356466	105	2.1	105	89	1	339	55	3	33	8	1.47
62356438--62356493	27	2.1	27	82	0	67	62	1	33	1	1.16
62356353--62356667	90	3.6	86	81	11	349	56	3	31	7	1.45
62356085--62356628	288	1.9	289	87	4	810	54	3	32	8	1.48
62356618--62356667	12	3.9	12	75	14	55	64	0	32	4	1.12
62356607--62356675	27	2.6	26	72	6	66	57	4	33	4	1.38
62360081--62360154	36	2.0	38	86	7	107	52	10	2	33	1.50
62363144--62363177	8	4.0	8	85	14	50	38	0	0	61	0.96
62370068--62370109	21	2.0	21	81	9	50	40	28	0	30	1.57
62370721--62370824	45	2.3	45	83	0	127	41	19	18	21	1.91
62371856--62371905	10	4.5	11	83	14	59	0	18	8	74	1.06
62371856--62371904	22	2.2	23	79	17	59	0	18	8	73	1.07
62372043--62372078	18	1.9	19	94	5	65	55	5	0	38	1.23
62372047--62372088	18	2.3	18	84	12	50	57	7	0	35	1.26
62380452--62380500	18	2.8	17	81	9	62	83	4	2	10	0.85
62383016--62383040	4	6.2	4	100	0	50	76	0	0	24	0.80
62384806--62384855	18	2.7	18	84	3	64	42	40	4	14	1.64
62384998--62385028	9	3.4	9	90	0	53	25	9	22	41	1.84
62388669--62388712	23	1.9	23	86	9	63	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62388691--62388750	25	2.4	25	75	13	61	58	0	0	41	0.98
62389986--62390024	6	6.2	6	91	8	60	30	0	2	66	1.05
62389986--62390024	13	3.1	12	89	10	60	30	0	2	66	1.05
62393480--62393682	108	1.9	106	82	4	255	36	17	14	31	1.90
62394283--62394322	16	2.5	16	91	0	62	52	2	10	35	1.48
62394544--62394569	13	2.0	13	100	0	52	61	7	0	30	1.24
62396882--62397420	45	11.9	45	76	7	362	31	18	15	33	1.93
62396810--62397420	134	4.5	133	77	6	446	32	18	15	33	1.92
62396934--62397109	96	1.8	96	81	0	217	31	18	17	32	1.94
62397075--62397420	89	3.9	87	77	9	301	32	18	15	33	1.92
62396889--62397420	222	2.3	228	81	6	593	31	18	15	33	1.93
62398042--62398076	15	2.4	15	90	4	54	48	0	8	42	1.33
62404433--62404486	26	2.2	25	86	6	74	27	1	0	70	0.98
62404433--62404497	26	2.6	26	81	11	66	24	1	4	69	1.16
62423418--62423485	25	2.7	25	90	0	100	23	23	22	30	1.99
62431509--62431565	29	2.0	29	86	6	80	49	12	10	28	1.73
62435841--62435876	19	1.9	19	88	5	56	58	13	2	25	1.49
62437133--62437211	39	2.0	39	95	0	140	37	15	12	34	1.85
62448757--62448823	18	3.9	17	77	11	66	61	5	0	32	1.20
62452302--62452336	17	2.1	17	89	5	54	42	0	0	57	0.99
62452514--62452547	12	2.8	12	95	4	59	91	0	8	0	0.43
62452514--62452547	16	2.1	16	94	0	59	91	0	8	0	0.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62452721--62452746	13	2.0	13	100	0	52	15	38	7	38	1.76
62452897--62452942	23	2.0	24	82	4	58	4	6	17	71	1.24
62456062--62456100	20	1.9	21	84	5	53	43	5	15	35	1.69
62464638--62464700	29	2.1	30	85	5	83	49	1	1	47	1.20
62472437--62472469	14	2.4	14	85	5	50	24	0	3	72	0.98
62473598--62473665	5	13.2	5	81	18	70	39	0	0	60	0.97
62473601--62473657	3	21.0	3	78	20	63	38	0	0	61	0.96
62473601--62473659	24	2.3	27	83	13	72	38	0	0	61	0.96
62473674--62473769	40	2.3	40	89	3	147	63	8	28	0	1.23
62474476--62474533	30	1.9	30	89	0	89	41	3	24	31	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211