genome.fa.s21.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  35  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10223971--10224053	40	2.1	40	88	0	121	40	19	4	34	1.73
10246024--10246073	26	1.9	26	88	8	75	58	2	32	8	1.39
10251604--10251667	18	3.6	19	80	14	59	18	0	9	71	1.12
10251623--10251655	6	5.5	6	100	0	66	15	0	15	69	1.19
10253103--10253440	32	10.6	30	78	10	212	31	11	15	40	1.83
10253149--10253426	32	8.7	32	84	0	324	32	12	16	38	1.85
10253149--10253426	64	4.4	64	90	0	450	32	12	16	38	1.85
10253146--10253440	96	3.1	96	85	0	412	32	11	15	39	1.84
10256074--10256108	15	2.4	15	85	4	54	48	5	5	40	1.51
10256079--10256117	16	2.5	15	87	8	51	48	7	10	33	1.66
10256350--10256470	57	2.1	57	95	0	215	22	19	14	43	1.87
10257117--10257144	13	2.2	13	100	0	56	25	14	21	39	1.91
10266436--10266485	3	16.7	3	100	0	100	68	0	0	32	0.90
10275774--10275881	49	2.2	49	96	0	198	30	18	17	33	1.94
10279912--10279950	19	2.1	19	100	0	78	61	0	28	10	1.28
10283537--10283568	10	3.2	10	90	0	55	43	0	0	56	0.99
10285542--10285579	18	2.2	17	86	9	51	50	2	0	47	1.15
10285697--10285775	38	2.1	37	85	4	104	35	2	7	54	1.42
10288332--10288396	20	3.4	19	76	23	66	46	0	1	52	1.10
10288363--10288406	8	5.8	8	82	17	58	36	0	0	63	0.95
10291477--10291504	6	4.7	6	100	0	56	64	17	0	17	1.30
10291545--10291593	9	5.4	9	90	0	71	24	10	26	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10296060--10296397	46	7.6	46	88	6	509	33	15	21	29	1.94
10296096--10296214	36	3.0	36	76	21	139	35	15	21	27	1.94
10298469--10298502	17	2.0	17	100	0	68	41	5	11	41	1.66
10300152--10300194	22	2.0	22	100	0	86	30	9	23	37	1.86
10300875--10300996	23	5.3	23	87	2	174	24	21	23	30	1.99
10300875--10300996	46	2.7	46	90	2	201	24	21	23	30	1.99
10305139--10305182	7	6.7	7	94	5	67	72	0	0	27	0.85
10305663--10305712	19	2.6	19	93	0	91	38	16	10	36	1.82
10305636--10305712	38	1.9	40	84	10	104	37	16	9	36	1.81
10306258--10306515	45	5.9	45	75	9	178	25	20	22	31	1.98
10306880--10306975	43	2.2	44	88	5	142	30	27	15	27	1.96
10306880--10307000	44	2.8	43	83	8	147	28	26	19	26	1.98
10307061--10307198	43	3.2	43	69	4	141	20	25	27	26	1.99
10307000--10307662	88	7.6	88	89	2	967	21	23	27	27	1.99
10307198--10307323	41	3.0	42	65	11	112	22	23	26	28	1.99
10307000--10307662	173	3.8	175	88	3	908	21	23	27	27	1.99
10307013--10307662	261	2.5	261	90	2	991	21	23	27	27	1.99
10314201--10314237	6	5.7	7	93	6	53	72	0	0	27	0.84
10314694--10314738	23	2.0	22	91	4	72	35	17	8	37	1.81
10314694--10314770	19	3.8	19	87	6	100	37	16	9	36	1.81
10318422--10318586	45	3.7	45	80	5	165	40	15	19	24	1.91
10318424--10318591	90	1.9	89	82	3	212	39	16	19	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10318556--10318677	45	2.7	44	79	5	127	45	17	20	17	1.86
10333312--10334238	466	2.0	466	97	0	1737	27	20	15	36	1.93
10341861--10342013	27	5.7	27	75	4	87	18	23	18	39	1.92
10344626--10344657	7	4.6	7	100	0	64	31	0	12	56	1.37
10344650--10344707	27	2.2	26	84	3	71	36	17	8	37	1.80
10349792--10349939	57	2.5	60	84	9	196	22	25	21	30	1.99
10353278--10353424	49	3.0	48	87	4	195	32	27	13	25	1.94
10355179--10355320	57	2.4	59	89	8	209	21	27	21	29	1.98
10357575--10357634	30	2.0	31	86	3	86	43	0	36	20	1.52
10357848--10357884	9	4.1	9	92	0	65	29	10	13	45	1.77
10361764--10361789	7	3.7	7	100	0	52	30	26	11	30	1.92
10367786--10367829	23	1.9	23	86	9	63	52	4	15	27	1.63
10368878--10368951	29	2.5	29	84	4	94	27	14	12	45	1.80
10378674--10378732	29	2.0	30	90	3	93	30	0	49	20	1.49
10380793--10380990	50	3.9	50	75	11	154	26	28	19	25	1.99
10388255--10388285	16	1.9	16	100	0	62	54	0	0	45	0.99
10389950--10390385	217	2.0	217	93	1	741	38	15	19	25	1.91
10402136--10402176	21	2.0	21	90	0	64	41	31	7	19	1.79
10402935--10403255	158	2.0	158	98	0	624	46	14	12	27	1.80
10403287--10403373	43	2.0	43	100	0	174	36	13	13	35	1.85
10406909--10406952	24	1.9	24	90	9	74	36	0	2	61	1.09
10407014--10407041	9	3.1	9	100	0	56	57	10	0	32	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10407023--10407162	59	2.4	59	96	0	253	47	9	4	39	1.55
10407173--10407214	16	2.6	16	92	0	66	42	7	2	47	1.43
10407188--10407249	23	2.7	23	82	2	72	48	1	1	48	1.21
10407188--10407251	22	2.9	22	78	17	69	48	1	1	48	1.20
10407656--10407684	14	2.1	14	93	6	51	55	0	0	44	0.99
10417649--10417757	26	4.3	26	81	3	125	22	22	18	37	1.94
10417664--10417821	26	6.2	26	66	12	69	20	20	19	39	1.93
10440645--10440842	51	3.9	50	77	4	200	28	27	18	25	1.98
10440653--10440838	101	1.8	99	85	5	248	30	26	18	24	1.98
10443355--10443444	45	2.0	45	93	0	153	30	24	16	28	1.97
10450075--10450424	177	2.0	175	83	4	445	36	12	17	33	1.88
10453608--10453641	3	11.3	3	100	0	68	32	0	0	67	0.91
10460624--10460688	29	2.2	29	86	0	94	24	27	30	16	1.97
10460800--10460854	15	3.7	15	95	0	101	14	25	47	12	1.80
10467397--10467756	182	2.0	182	97	0	675	30	20	21	26	1.98
10502489--10502685	41	4.8	41	79	5	184	18	23	22	36	1.95
10502488--10502685	81	2.4	81	78	7	213	18	23	22	35	1.95
10503170--10503237	14	4.9	14	72	16	52	27	0	30	41	1.56
10505391--10505419	10	2.9	10	100	0	58	41	0	17	41	1.49
10505487--10505538	27	1.9	27	84	0	68	42	0	9	48	1.36
10507852--10507904	21	2.5	21	87	9	81	37	3	1	56	1.28
10507977--10508001	12	2.1	12	100	0	50	52	16	0	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10507975--10508033	21	2.6	24	74	12	63	49	13	1	35	1.52
10507979--10508063	32	2.6	32	85	7	100	49	11	1	37	1.47
10507977--10508061	44	1.9	43	86	9	118	49	10	1	38	1.45
10508056--10508657	9	70.2	9	71	17	331	48	20	1	29	1.59
10508070--10508144	12	6.3	12	84	9	100	50	14	0	34	1.43
10508070--10508658	34	16.1	35	64	25	119	48	20	1	29	1.59
10508056--10508143	23	3.5	25	74	18	67	50	18	0	31	1.47
10508209--10508658	74	5.7	74	76	12	271	47	20	2	29	1.61
10508296--10508657	25	14.3	25	79	7	132	48	20	1	29	1.60
10508197--10508657	34	13.5	35	72	14	306	47	21	1	29	1.61
10514125--10514189	21	3.1	21	86	0	85	32	16	44	6	1.73
10514650--10514820	72	2.4	70	74	9	168	30	22	21	25	1.99
10515557--10515608	27	1.9	27	84	7	70	28	5	15	50	1.67
10516333--10516572	115	2.1	114	91	1	381	28	20	20	30	1.97
10516410--10517227	261	3.1	261	90	1	1239	26	17	21	34	1.96
10517699--10517738	21	1.9	21	94	0	71	37	15	10	37	1.80
10517712--10517789	34	2.3	34	95	0	138	29	12	12	44	1.80
10519280--10519305	12	2.2	12	100	0	52	30	15	0	53	1.42
10519292--10519633	76	4.3	77	89	5	483	35	7	2	53	1.44
10519368--10519394	11	2.5	11	100	0	54	37	14	0	48	1.45
10519398--10519631	34	6.4	34	65	16	128	35	6	3	53	1.44
10519598--10519656	23	2.4	25	83	11	86	33	6	1	57	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10519862--10519987	9	14.0	9	82	0	162	47	16	0	35	1.47
10519850--10519992	27	5.3	27	96	0	268	48	14	0	36	1.44
10525497--10525582	21	4.1	21	78	0	100	36	20	40	2	1.66
10525567--10525607	12	3.3	12	86	6	55	43	17	36	2	1.62
10526031--10526406	42	8.9	42	83	4	422	27	21	19	31	1.97
10526029--10526406	85	4.5	84	83	7	439	27	21	19	31	1.97
10526724--10526971	85	2.9	84	81	7	277	25	23	18	33	1.97
10526724--10526990	43	6.2	43	83	3	272	25	23	18	32	1.97
10531796--10531845	24	2.1	23	88	3	73	24	22	2	52	1.58
10538400--10538440	19	2.2	19	86	0	55	34	17	26	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211