genome.fa.s21.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  94  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29449254--29449280	9	3.0	9	100	0	54	44	11	11	33	1.75
29469416--29469497	25	3.3	25	84	3	94	21	19	20	37	1.94
29469428--29469514	25	3.5	25	83	0	93	22	18	24	34	1.96
29480492--29480522	6	5.2	6	92	0	53	16	19	0	64	1.29
29481062--29481099	20	1.9	20	88	0	58	31	34	15	18	1.92
29482912--29482979	33	2.1	33	94	0	118	19	26	5	48	1.71
29483811--29483841	12	2.6	12	89	0	53	64	6	12	16	1.47
29487153--29487204	16	3.4	16	74	15	65	36	25	0	38	1.56
29487145--29487204	29	2.1	29	93	0	102	33	26	0	40	1.57
29492699--29493145	47	9.5	47	92	0	696	32	8	29	29	1.87
29492699--29493145	190	2.4	188	91	1	725	32	8	29	29	1.87
29493264--29493342	37	2.1	37	88	4	115	25	18	30	25	1.98
29494728--29494853	45	2.8	46	80	8	141	46	10	18	24	1.80
29494936--29494989	27	2.0	28	88	3	83	40	18	24	16	1.90
29495479--29495554	40	1.9	40	100	0	152	25	13	26	35	1.92
29499020--29499085	23	2.9	23	90	0	105	31	9	19	39	1.83
29500572--29500954	50	7.6	50	81	5	337	23	29	20	27	1.99
29516535--29516594	29	2.1	29	83	0	75	45	11	6	36	1.67
29518148--29518195	23	2.1	23	85	14	64	4	20	0	75	0.97
29532707--29532753	22	2.0	24	88	8	71	53	0	0	46	1.00
29540547--29540705	43	3.7	43	77	7	153	25	16	25	31	1.97
29540585--29540697	42	2.6	44	77	5	106	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29543902--29544127	40	5.7	40	91	4	289	26	26	21	25	2.00
29547847--29547886	6	6.3	6	88	5	53	17	7	0	75	1.03
29554064--29554120	17	3.6	16	73	17	57	36	3	1	57	1.26
29555685--29555869	51	3.7	50	78	7	162	24	18	25	30	1.98
29555685--29555869	101	1.8	102	84	5	259	24	18	25	30	1.98
29555685--29555877	102	1.9	101	84	5	255	24	18	26	30	1.98
29556094--29556125	16	2.0	16	93	0	55	59	0	15	25	1.36
29558449--29558476	8	3.5	8	100	0	56	25	0	0	75	0.81
29561005--29561216	50	4.2	50	87	0	289	26	21	30	21	1.98
29573118--29573251	40	3.4	39	81	6	137	36	22	20	20	1.95
29573158--29573251	39	2.4	39	87	7	129	35	20	24	20	1.96
29573287--29573648	41	8.9	41	86	1	431	21	23	26	28	1.99
29574430--29574463	15	2.3	15	100	0	68	20	0	38	41	1.53
29574632--29574662	13	2.3	14	94	5	55	22	0	41	35	1.54
29574465--29574752	117	2.5	114	82	6	321	27	3	27	41	1.71
29575118--29575155	20	1.9	20	84	10	51	76	7	0	15	1.01
29575509--29575873	146	2.5	144	83	9	431	41	15	10	31	1.82
29579901--29579990	43	2.1	42	84	8	119	35	8	10	45	1.69
29580313--29580565	43	5.9	43	85	2	312	18	16	32	32	1.94
29580313--29580566	129	2.0	129	85	1	348	18	16	31	32	1.94
29582726--29582773	23	2.0	24	88	4	71	33	2	18	45	1.61
29585669--29585698	12	2.5	12	100	0	60	50	20	10	20	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29589662--29589880	109	2.0	109	99	0	429	39	12	20	27	1.89
29593837--29593913	6	12.8	6	91	0	91	18	0	7	74	1.06
29599088--29599131	2	22.0	2	85	0	61	45	0	47	6	1.29
29599213--29599272	18	3.2	18	73	19	50	36	1	3	58	1.25
29601860--29601938	37	2.1	37	88	0	113	25	30	18	25	1.98
29602058--29602316	47	5.3	47	90	4	356	29	29	8	32	1.87
29602248--29602289	16	2.5	16	84	7	57	40	26	0	33	1.56
29609664--29609688	2	12.5	2	100	0	50	52	0	0	48	1.00
29617968--29618015	24	2.0	24	100	0	96	50	29	8	12	1.69
29618485--29618725	50	4.7	50	80	3	214	25	27	20	26	1.99
29622240--29622284	21	2.1	22	84	12	58	57	0	2	40	1.11
29626516--29626582	20	3.4	19	80	13	82	26	26	8	37	1.86
29626545--29626586	10	4.2	10	78	9	50	23	23	9	42	1.83
29629254--29629438	79	2.3	81	83	7	227	24	22	27	24	2.00
29629255--29629438	40	4.6	40	82	9	207	25	22	27	24	2.00
29629307--29629461	79	2.0	79	83	7	199	26	21	27	25	1.99
29637290--29637474	79	2.3	81	83	7	227	24	22	27	24	2.00
29637291--29637474	40	4.6	40	82	9	207	25	22	27	24	2.00
29637343--29637497	79	2.0	79	83	7	199	26	21	27	25	1.99
29646073--29646139	20	3.4	19	80	13	82	23	28	11	35	1.91
29646102--29646143	10	4.2	10	78	9	50	21	26	11	40	1.88
29660664--29660929	40	6.7	40	82	1	264	20	30	15	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29660664--29660919	120	2.1	120	81	2	300	20	31	16	32	1.94
29660664--29660929	80	3.3	80	80	2	291	20	30	15	33	1.94
29670493--29670536	15	2.9	15	100	0	88	31	6	27	34	1.83
29670929--29670974	21	2.2	21	88	0	65	23	19	34	21	1.96
29678262--29678749	47	10.3	47	94	1	832	32	8	29	29	1.87
29678868--29678946	37	2.1	37	90	0	122	24	18	31	25	1.98
29682016--29682059	20	2.3	20	85	11	58	38	0	0	61	0.96
29686554--29686766	67	3.1	67	67	19	188	44	4	7	43	1.53
29686543--29686824	136	2.1	137	89	3	435	45	5	7	41	1.54
29686801--29686947	75	2.0	74	84	1	195	30	14	8	45	1.76
29692205--29692244	20	1.9	20	85	10	53	37	15	5	42	1.68
29694117--29694168	25	2.1	25	85	0	68	23	19	11	46	1.82
29694129--29694185	25	2.3	25	81	6	71	24	15	19	40	1.90
29695165--29695211	24	2.0	24	82	0	58	21	10	17	51	1.75
29695876--29695903	14	2.0	14	100	0	56	21	7	0	71	1.09
29699348--29699458	57	1.9	57	92	0	186	27	15	24	33	1.95
29710109--29710163	22	2.5	22	84	0	74	49	16	14	20	1.80
29710163--29710290	32	4.0	32	84	0	166	35	18	22	22	1.95
29710465--29710511	24	2.0	24	86	0	67	51	27	8	12	1.69
29710475--29710591	24	4.9	23	78	10	69	47	20	6	25	1.75
29710476--29710594	48	2.5	48	81	0	139	46	20	6	26	1.75
29710500--29710596	24	4.0	24	86	0	131	46	17	6	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29710516--29710621	24	4.3	23	77	9	68	42	16	10	30	1.82
29710613--29710969	27	13.3	27	73	7	183	20	20	21	38	1.94
29710613--29710819	80	2.6	80	82	8	267	17	21	23	37	1.94
29710691--29710920	53	4.3	53	78	3	228	20	21	20	37	1.95
29710637--29710920	107	2.7	106	83	3	336	20	21	21	37	1.94
29710774--29710949	80	2.2	81	84	1	228	21	22	19	36	1.95
29713505--29713534	15	2.1	15	93	6	53	46	6	20	26	1.75
29713975--29714008	17	2.0	17	88	0	50	20	11	5	61	1.50
29723932--29723964	17	2.0	16	94	5	57	21	36	12	30	1.90
29741499--29741892	29	13.6	29	81	1	295	25	26	12	35	1.92
29757759--29757937	85	2.1	85	100	0	358	37	8	27	26	1.85
29759106--29759287	79	2.3	81	81	7	212	24	21	28	25	1.99
29759105--29759289	40	4.7	40	79	6	198	24	21	28	26	1.99
29762483--29762723	50	4.7	50	83	5	268	27	21	28	21	1.99
29762974--29763005	12	2.7	12	95	0	55	56	6	18	18	1.62
29767191--29767258	34	2.0	34	100	0	136	29	32	5	32	1.81
29767283--29767387	9	11.8	9	70	17	76	33	5	0	60	1.20
29767283--29767354	19	3.8	19	83	7	76	30	6	0	62	1.21
29769920--29769974	20	2.8	19	83	8	65	30	9	18	41	1.81
29772238--29772279	21	2.0	21	90	4	68	33	0	19	47	1.49
29772459--29772633	88	2.0	89	91	1	289	24	0	30	45	1.54
29772776--29772922	74	2.0	74	94	0	258	42	8	14	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29773448--29773633	94	2.0	94	97	1	356	35	6	9	48	1.62
29773647--29773899	132	1.9	132	86	4	366	43	11	11	34	1.75
29774374--29774399	11	2.4	11	100	0	52	0	7	7	84	0.77
29774650--29774677	6	4.7	6	100	0	56	14	0	0	85	0.59
29777311--29777662	43	8.2	44	85	1	387	23	17	31	27	1.97
29788872--29788918	20	2.3	20	81	0	58	23	12	34	29	1.92
29790308--29790398	44	2.1	44	100	0	182	26	23	21	28	1.99
29793253--29793357	39	2.6	39	85	5	113	24	21	28	24	1.99
29793216--29793357	40	3.6	40	79	12	141	24	21	28	24	1.99
29793582--29793749	47	3.6	47	89	0	246	33	8	29	27	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211