genome.fa.s21.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  99  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31099957--31099985	5	5.8	5	100	0	58	41	20	0	37	1.53
31103285--31103334	21	2.4	21	82	0	64	22	28	32	18	1.97
31106482--31106522	21	2.0	21	90	0	64	29	24	24	21	1.99
31108232--31108289	15	3.5	18	75	20	63	0	22	3	74	0.97
31117954--31117988	8	4.5	8	89	3	54	51	2	22	22	1.61
31120034--31120063	12	2.5	12	94	0	51	23	40	30	6	1.80
31120058--31120111	13	4.2	13	76	9	56	20	25	37	16	1.93
31121261--31121557	30	9.9	30	77	8	149	39	13	25	22	1.90
31121261--31121335	31	2.5	31	88	2	107	41	10	24	24	1.86
31121384--31121602	30	7.3	30	75	11	137	35	12	27	23	1.92
31121466--31121544	29	2.7	30	90	4	124	43	10	26	20	1.83
31121267--31121602	149	2.2	150	85	3	444	37	13	26	22	1.91
31130720--31130754	13	2.7	13	91	8	54	85	0	14	0	0.59
31138088--31138126	16	2.4	16	91	4	60	28	0	2	69	1.02
31140877--31140926	21	2.3	22	86	3	66	22	24	10	44	1.83
31143914--31143942	14	2.1	14	100	0	58	44	13	13	27	1.82
31144356--31144567	106	2.0	106	100	0	424	36	11	17	33	1.86
31146342--31146397	25	2.2	25	78	9	69	64	1	1	32	1.14
31158789--31158871	24	3.5	24	78	3	87	45	8	25	20	1.79
31161585--31161613	15	1.9	15	100	0	58	58	6	0	34	1.25
31167784--31167846	26	2.4	27	81	7	85	41	14	11	33	1.81
31175719--31175774	24	2.3	24	93	0	94	51	8	23	16	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31176077--31176117	18	2.3	18	100	0	82	14	4	24	56	1.58
31177822--31177936	46	2.5	46	89	0	176	21	21	26	30	1.99
31177822--31177940	23	5.2	23	83	4	159	22	21	25	30	1.99
31179710--31180152	27	16.4	27	83	3	502	18	20	18	42	1.89
31182578--31182631	19	2.8	18	83	8	63	70	1	5	22	1.18
31184377--31184402	6	4.3	6	100	0	52	50	0	34	15	1.45
31197026--31197329	47	6.4	47	90	3	409	26	30	9	32	1.88
31202776--31202828	22	2.4	22	87	0	70	52	1	1	43	1.23
31202804--31202843	16	2.5	16	87	0	53	50	2	5	42	1.37
31202854--31202993	59	2.4	59	97	0	262	38	4	9	47	1.55
31203099--31203142	24	1.9	24	90	9	74	61	2	0	36	1.09
31209162--31209250	25	3.7	25	66	14	78	59	13	13	13	1.61
31213641--31213746	41	2.5	42	80	3	106	27	16	25	30	1.97
31213583--31213746	43	3.9	43	76	7	165	23	18	26	31	1.97
31213872--31213903	16	1.9	17	93	6	57	40	0	21	37	1.54
31223586--31224068	236	2.0	237	91	1	799	34	21	14	29	1.93
31231324--31231353	14	2.1	14	93	0	51	46	16	23	13	1.82
31234278--31234341	28	2.2	29	86	8	87	60	6	1	31	1.30
31234488--31234719	116	2.0	116	94	0	410	44	11	12	31	1.77
31234832--31234918	30	2.9	30	75	3	86	26	3	3	66	1.23
31241949--31242452	47	10.6	47	93	1	828	32	8	30	29	1.86
31241949--31242452	190	2.7	190	94	0	877	32	8	30	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31242571--31242715	37	3.9	37	92	0	227	23	20	31	24	1.98
31243979--31244330	40	8.8	40	94	0	596	22	22	30	24	1.99
31263800--31263837	19	2.0	19	100	0	76	21	26	10	42	1.85
31265015--31265049	16	2.2	16	89	0	52	25	25	2	45	1.67
31267980--31268087	25	4.3	26	85	10	120	28	1	3	65	1.20
31274478--31275604	44	25.5	45	77	4	1022	29	16	24	28	1.97
31274481--31275604	133	8.5	133	94	0	1808	29	16	24	29	1.97
31275585--31275897	88	3.6	87	89	1	455	28	23	23	24	2.00
31275585--31275882	43	6.8	45	64	13	161	27	22	24	25	2.00
31277811--31277870	25	2.4	26	81	13	72	28	1	3	66	1.17
31277828--31277893	25	2.8	25	77	13	68	28	3	4	63	1.29
31277940--31277993	26	2.0	28	82	10	67	35	1	7	55	1.39
31283193--31283224	14	2.3	14	100	0	64	31	46	15	6	1.71
31288760--31288897	72	2.0	71	87	5	201	39	4	4	51	1.42
31291036--31291078	21	2.1	20	86	4	59	46	2	9	41	1.48
31296849--31296905	23	2.5	23	77	5	62	56	1	0	42	1.10
31297564--31297655	26	3.4	25	67	20	67	42	1	3	53	1.24
31299236--31299391	45	3.5	45	80	7	167	43	16	21	19	1.88
31299236--31299408	90	1.9	90	82	6	217	42	16	21	19	1.89
31300812--31300868	27	2.1	27	100	0	114	50	15	3	29	1.61
31308297--31308335	15	2.5	15	91	4	60	43	5	0	51	1.24
31313680--31313724	23	1.9	24	82	13	58	68	2	0	28	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31328487--31328534	19	2.6	18	80	9	60	41	2	0	56	1.11
31328487--31328534	9	5.1	9	80	9	60	41	2	0	56	1.11
31328918--31328961	21	2.1	21	82	0	52	45	6	13	34	1.70
31331039--31331081	22	1.9	23	85	4	61	41	13	9	34	1.77
31333841--31333882	19	2.2	19	83	8	50	54	0	2	42	1.13
31334595--31334690	43	2.2	44	82	12	110	27	6	27	39	1.80
31334840--31334927	42	2.1	42	100	0	176	47	0	11	40	1.39
31338508--31338656	72	2.1	72	98	0	289	37	5	12	44	1.66
31338748--31338843	13	7.2	13	79	9	104	52	4	6	37	1.46
31338751--31338843	27	3.5	25	77	11	96	52	4	6	36	1.47
31338748--31338843	40	2.4	40	89	3	140	52	4	6	37	1.46
31341530--31341783	43	6.0	42	83	5	282	32	20	22	24	1.98
31341518--31341783	85	3.1	84	83	4	302	31	21	23	24	1.98
31341533--31341776	128	1.9	127	83	5	314	32	20	22	24	1.98
31341518--31341827	43	7.2	42	79	7	265	30	21	23	24	1.99
31341533--31341827	128	2.3	126	79	9	312	31	21	22	24	1.98
31342266--31342290	12	2.1	12	100	0	50	0	44	16	40	1.47
31342278--31342323	21	2.2	21	92	0	74	8	43	13	34	1.74
31347856--31348058	9	23.2	9	72	13	165	31	2	20	45	1.66
31347859--31348009	52	2.9	50	86	3	176	32	2	20	44	1.65
31347894--31348029	25	5.4	25	81	8	134	30	1	22	45	1.61
31348171--31348211	13	2.8	15	85	14	59	34	0	19	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31348170--31348248	16	5.0	16	76	13	74	34	1	16	48	1.55
31348285--31348324	21	1.9	21	85	10	55	55	5	0	40	1.22
31351400--31351575	56	3.1	56	99	0	343	44	9	23	22	1.81
31352700--31352924	40	5.7	40	86	5	296	24	22	28	25	2.00
31352700--31352957	119	2.2	119	81	6	292	25	21	27	25	1.99
31359424--31359556	56	2.4	55	97	2	250	46	9	22	21	1.79
31360689--31360913	40	5.7	40	86	8	291	24	22	27	26	2.00
31362630--31362672	18	2.4	19	80	11	54	34	41	0	23	1.55
31364675--31364914	41	5.9	40	76	2	203	35	23	23	17	1.96
31364692--31364913	82	2.7	82	82	1	266	36	23	22	16	1.94
31364675--31364912	123	1.9	123	84	3	318	35	23	23	17	1.95
31366299--31366419	30	4.0	30	87	7	174	22	36	2	38	1.68
31366276--31366410	60	2.2	60	88	1	189	25	35	2	36	1.69
31366297--31366418	60	2.0	61	95	1	219	22	36	2	38	1.68
31366556--31366615	30	2.0	30	87	6	86	20	45	0	35	1.51
31369887--31369913	6	4.5	6	100	0	54	48	0	33	18	1.49
31371740--31371779	21	1.9	21	94	0	71	47	17	22	12	1.81
31374056--31374144	44	2.0	44	100	0	178	29	13	8	48	1.73
31374514--31374574	28	2.3	27	82	5	70	9	19	16	54	1.70
31375941--31375992	26	2.0	26	100	0	104	26	19	19	34	1.95
31383718--31383789	33	2.2	33	85	5	92	11	26	6	55	1.60
31383726--31383790	33	1.9	34	87	3	96	10	24	6	58	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31384983--31385029	10	4.6	10	83	2	58	14	4	2	78	0.99
31384983--31385029	20	2.3	20	88	3	67	14	4	2	78	0.99
31384974--31385030	30	1.9	30	85	7	80	17	3	3	75	1.09
31391680--31391738	21	2.8	21	80	14	68	42	0	1	55	1.09
31391856--31391883	11	2.5	11	100	0	56	25	0	7	67	1.15
31395397--31395453	29	2.0	29	85	0	78	36	10	8	43	1.70
31401481--31401671	50	3.7	50	80	4	184	27	21	28	21	1.99
31401542--31401720	50	3.6	50	78	5	159	30	24	25	20	1.99
31421715--31421764	6	8.3	6	100	0	100	32	0	18	50	1.47
31423376--31423412	13	2.7	14	84	16	51	62	0	0	37	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211