genome.fa.s21.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  189  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58480183--58480522	96	3.6	95	84	7	385	38	19	2	40	1.64
58481615--58481649	18	1.9	18	88	11	54	65	2	0	31	1.07
58481616--58481677	27	2.3	26	83	13	72	61	3	1	33	1.22
58487472--58487518	24	2.0	24	100	0	94	8	23	12	55	1.64
58489164--58489277	41	2.8	41	87	1	165	27	27	20	25	1.99
58489938--58489990	12	4.2	12	77	13	52	43	7	3	45	1.50
58497155--58497194	18	2.2	18	95	0	71	7	37	2	52	1.43
58500069--58500113	18	2.6	18	85	3	56	42	0	2	55	1.12
58500017--58500375	120	3.0	120	96	0	659	42	0	4	52	1.27
58501190--58501239	22	2.3	23	82	10	68	26	26	0	48	1.52
58508293--58508411	49	2.4	49	97	0	220	43	3	8	44	1.51
58511548--58511834	125	2.3	124	92	0	466	30	20	17	31	1.96
58513346--58513905	193	2.9	194	81	6	609	28	15	17	38	1.90
58516733--58516865	64	2.1	65	97	1	250	35	17	18	28	1.94
58516968--58516998	15	2.1	15	100	0	62	25	6	19	48	1.72
58518321--58518350	12	2.5	12	94	0	51	30	16	30	23	1.96
58533464--58533504	21	2.0	21	85	9	57	51	7	4	36	1.51
58539872--58539923	21	2.5	22	74	22	58	61	7	1	28	1.34
58539872--58539927	20	2.8	20	75	8	51	60	7	1	30	1.33
58548656--58548755	17	5.5	17	67	13	65	49	17	5	29	1.67
58548672--58548738	20	3.5	20	70	12	68	43	19	7	29	1.78
58548649--58548760	37	3.0	37	96	0	197	46	16	6	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58548649--58548777	37	3.5	37	91	4	190	47	15	6	31	1.70
58557802--58557832	15	2.1	15	93	0	53	64	9	6	19	1.45
58568139--58568217	39	2.1	37	81	9	88	45	3	0	50	1.19
58569502--58569556	22	2.5	22	88	11	78	69	3	0	27	1.05
58569502--58569558	7	7.9	7	75	21	55	68	3	0	28	1.06
58573502--58573558	17	3.4	16	73	7	51	61	1	1	35	1.17
58577104--58577140	19	1.9	19	89	10	58	37	0	2	59	1.12
58586642--58586676	18	1.9	19	88	11	56	71	2	0	25	1.00
58592886--58592915	2	15.0	2	92	0	51	50	3	0	46	1.18
58593443--58593509	31	2.1	32	97	2	127	34	7	10	47	1.66
58597599--58597660	3	20.7	3	100	0	124	67	0	32	0	0.91
58598465--58599084	109	5.7	109	94	0	983	33	18	16	31	1.93
58599134--58599163	15	2.0	15	93	0	51	56	6	16	20	1.62
58599201--58599232	4	8.0	4	92	0	55	71	0	3	25	1.00
58599574--58599621	24	2.0	24	84	8	62	50	4	6	39	1.47
58599713--58599757	21	2.1	22	80	12	58	57	0	6	35	1.25
58599725--58599795	3	23.7	3	77	5	63	56	0	8	35	1.30
58601290--58601756	95	4.9	95	93	0	781	30	23	17	28	1.97
58601785--58602148	88	4.1	88	92	0	566	25	23	24	26	2.00
58602021--58602277	129	2.0	129	92	1	426	25	24	22	27	2.00
58601933--58602365	217	2.0	217	92	0	724	24	23	24	27	2.00
58602150--58602505	88	4.1	88	92	2	583	23	23	25	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58602150--58602505	174	2.0	175	92	2	590	23	23	25	28	2.00
58601950--58602447	217	2.3	217	84	5	542	25	23	24	26	2.00
58606536--58606587	19	2.7	20	82	5	63	46	11	17	25	1.81
58607994--58608637	108	5.9	110	91	3	889	33	17	16	32	1.93
58607985--58608637	109	6.0	109	91	1	913	33	17	16	32	1.93
58608661--58608700	21	1.9	21	85	10	55	55	7	12	25	1.63
58608687--58608716	15	2.0	15	93	0	51	56	6	16	20	1.62
58609270--58609332	3	21.0	3	77	6	56	57	0	7	34	1.28
58610623--58610998	44	8.3	44	67	12	134	31	17	22	29	1.96
58610567--58610923	138	2.6	137	84	3	448	29	17	22	30	1.97
58610579--58610997	138	3.0	137	83	2	412	30	17	22	30	1.96
58612708--58612733	9	2.9	9	100	0	52	42	11	0	46	1.40
58612812--58612858	22	2.1	22	85	14	62	23	6	4	65	1.33
58624012--58624060	19	2.5	20	80	6	55	36	10	2	51	1.48
58628591--58628932	171	2.0	171	93	1	587	37	21	12	28	1.90
58632109--58632148	21	1.9	21	94	0	71	42	15	27	15	1.86
58632320--58632352	17	1.9	17	93	0	57	51	12	0	36	1.39
58634715--58635092	188	2.0	188	100	0	756	45	6	11	36	1.65
58636544--58636916	105	3.6	105	95	1	642	30	30	20	18	1.96
58637244--58637307	30	2.2	29	81	10	76	29	28	6	35	1.82
58637251--58637307	30	1.9	30	85	3	80	29	24	7	38	1.82
58638456--58638505	26	1.9	26	91	0	82	52	12	8	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58639786--58640249	46	10.6	46	86	10	598	28	21	14	34	1.93
58640013--58640167	36	4.0	36	79	15	175	28	20	14	36	1.92
58639967--58640213	82	3.0	82	94	0	422	28	21	14	36	1.92
58639786--58640249	128	3.6	130	84	10	555	28	21	14	34	1.93
58645431--58645504	36	2.1	36	89	5	114	33	13	6	45	1.70
58655030--58655072	11	3.9	11	85	11	61	34	0	4	60	1.17
58655025--58655073	21	2.3	20	86	10	71	34	0	4	61	1.15
58655527--58655592	21	3.3	21	63	16	59	30	15	12	42	1.83
58655512--58655595	38	2.2	38	100	0	168	28	14	15	41	1.86
58655863--58655915	27	2.0	26	89	7	81	41	7	3	47	1.50
58655867--58655925	25	2.3	26	82	5	66	42	10	3	44	1.55
58664939--58665001	28	2.2	28	78	10	67	41	3	17	38	1.65
58675709--58675740	15	2.1	15	100	0	64	34	18	6	40	1.76
58678972--58679165	99	1.9	100	85	8	270	40	13	13	32	1.83
58683985--58684023	18	2.2	17	86	13	53	33	0	20	46	1.51
58684227--58684325	23	4.3	23	85	0	126	21	23	27	28	1.99
58687137--58687211	37	2.0	37	100	0	150	21	24	8	46	1.77
58689291--58689326	13	2.8	13	86	0	54	33	8	19	38	1.82
58693272--58693736	233	2.0	232	96	0	867	33	14	16	35	1.90
58696340--58696516	93	1.9	93	83	0	228	22	25	22	29	1.99
58696847--58696874	9	3.1	9	100	0	56	25	21	10	42	1.85
58708632--58708784	42	3.6	42	92	3	263	55	4	32	7	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58708632--58708784	21	7.3	21	93	2	231	55	4	32	7	1.48
58709595--58709648	25	2.2	25	96	0	99	27	12	20	38	1.89
58729774--58729810	19	1.9	19	88	0	56	72	2	16	8	1.19
58739708--58739754	19	2.4	20	75	13	53	72	8	14	4	1.24
58740161--58740206	7	6.7	7	80	14	60	67	0	17	15	1.24
58740161--58740206	20	2.3	19	88	11	65	67	0	17	15	1.24
58740151--58740193	13	3.2	13	90	3	59	72	0	16	11	1.13
58741360--58741754	87	4.5	87	92	0	619	29	22	24	24	1.99
58741394--58741610	42	5.0	42	64	18	122	29	22	24	23	1.99
58741803--58741931	44	2.9	44	73	2	125	32	23	23	20	1.98
58745021--58745213	89	2.2	89	79	1	208	31	25	19	23	1.98
58745385--58745497	44	2.6	44	85	5	140	30	21	20	27	1.98
58751580--58751721	72	2.0	72	91	0	230	35	16	19	28	1.94
58752172--58752223	27	2.0	26	88	3	77	44	0	13	42	1.44
58752502--58752543	21	1.9	23	90	9	70	66	7	0	26	1.17
58759767--58759824	22	2.6	23	86	8	84	39	0	1	58	1.08
58759767--58759819	23	2.3	22	90	6	79	39	0	1	58	1.09
58759769--58759826	23	2.5	24	83	13	68	39	0	1	58	1.08
58765055--58765096	22	1.9	22	85	0	57	42	2	4	50	1.36
58767306--58767345	16	2.5	15	84	11	53	57	0	5	37	1.21
58770170--58770209	3	13.0	3	84	5	53	35	0	2	62	1.09
58776780--58777047	87	3.1	87	91	0	437	30	20	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58777131--58778336	44	27.7	43	71	9	445	30	20	21	27	1.98
58777131--58778363	87	14.2	87	70	11	530	30	20	21	27	1.98
58777048--58777595	172	3.2	174	83	6	663	29	19	22	27	1.98
58777301--58777996	218	3.2	217	95	0	1212	30	20	22	27	1.98
58777083--58778344	392	3.2	391	85	5	1606	30	20	21	27	1.98
58777301--58778287	218	4.5	219	87	4	1042	30	20	21	27	1.98
58777783--58778241	174	2.6	174	88	3	586	31	21	20	27	1.98
58779826--58779850	10	2.5	10	100	0	50	20	0	8	72	1.10
58783000--58783155	83	1.9	84	84	10	212	46	5	4	42	1.47
58785083--58785142	21	3.0	21	81	13	72	16	25	16	41	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211