genome.fa.s21.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  138  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43588784--43588859	32	2.5	31	83	14	95	59	3	1	35	1.24
43589693--43589767	9	8.3	9	72	16	66	32	2	4	61	1.28
43589695--43589765	27	2.6	27	73	8	81	29	2	4	63	1.27
43591612--43591665	18	2.9	18	86	2	72	11	1	46	40	1.50
43593292--43593329	16	2.3	17	90	4	60	10	15	2	71	1.25
43595464--43595502	17	2.3	16	83	12	51	28	0	0	71	0.86
43598960--43599180	39	5.6	39	70	14	132	32	13	23	30	1.93
43598962--43599222	40	6.6	39	76	5	175	32	14	22	30	1.93
43598960--43599181	80	2.8	80	81	7	249	32	13	22	30	1.93
43605203--43605510	40	7.7	40	77	5	268	30	15	23	29	1.96
43607075--43607108	17	1.9	18	94	5	61	14	2	0	82	0.79
43611061--43611100	17	2.4	16	87	4	53	15	0	5	80	0.88
43611065--43611120	6	9.5	6	79	11	62	14	1	5	78	1.00
43611158--43611192	5	7.0	5	96	0	52	14	0	5	80	0.89
43614076--43614112	3	12.3	3	94	0	65	64	2	0	32	1.07
43615569--43615630	29	2.1	29	82	5	72	40	16	1	41	1.57
43619061--43619133	24	3.2	23	77	14	62	45	4	6	43	1.49
43619099--43619171	26	2.8	26	81	6	87	43	0	8	47	1.33
43619790--43619855	29	2.3	29	83	0	87	21	1	21	56	1.51
43619989--43620029	14	2.9	14	85	0	55	17	2	19	60	1.46
43626790--43626882	41	2.3	40	81	1	105	32	25	16	25	1.96
43629469--43629504	18	1.9	19	88	5	56	30	2	0	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43629469--43629528	18	3.4	17	80	15	52	28	1	0	70	0.97
43630389--43630433	22	2.0	23	86	4	65	35	4	6	53	1.47
43631471--43631516	24	1.9	24	86	8	67	32	4	13	50	1.61
43640977--43641031	10	5.6	10	75	12	51	60	1	5	32	1.30
43640967--43641042	29	2.6	28	81	6	89	59	1	6	32	1.32
43642147--43642182	18	2.0	18	88	0	54	69	2	22	5	1.22
43642935--43643200	50	5.3	49	71	2	201	22	19	25	31	1.98
43642929--43643201	100	2.7	99	93	1	447	22	19	25	32	1.97
43643565--43643855	44	6.6	44	78	6	216	21	25	20	32	1.98
43643596--43643860	88	3.0	87	88	2	352	21	24	20	33	1.97
43643598--43643854	132	1.9	132	87	1	372	20	25	21	32	1.97
43668912--43668945	17	1.9	18	88	5	52	29	11	11	47	1.76
43672914--43673008	43	2.2	43	86	0	136	21	31	27	20	1.97
43679225--43679302	40	2.0	40	86	0	111	21	24	29	24	1.99
43679515--43679955	125	3.5	125	90	0	695	32	18	20	28	1.96
43682972--43683140	35	4.6	35	66	13	97	39	5	8	46	1.60
43682938--43683151	112	1.9	112	96	0	392	39	7	8	43	1.64
43683224--43683293	21	3.3	21	84	4	95	24	1	30	44	1.62
43683230--43683291	22	2.9	21	86	9	81	24	1	27	46	1.62
43685752--43685828	11	6.9	11	71	21	54	48	2	25	23	1.64
43685754--43685812	22	2.7	21	78	17	66	45	3	27	23	1.68
43692825--43692857	16	2.1	16	88	5	50	57	0	9	33	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43697824--43697880	19	2.9	19	86	2	78	33	0	14	52	1.41
43697951--43698043	23	3.8	25	81	14	115	32	1	12	53	1.46
43697942--43698133	19	10.6	19	66	22	110	32	1	12	54	1.45
43697942--43698133	49	4.3	41	74	22	181	32	1	12	54	1.45
43697942--43698133	89	2.1	91	96	1	352	32	1	12	54	1.45
43697952--43698138	27	8.1	23	79	16	192	31	1	12	55	1.44
43698126--43698246	59	2.0	60	85	4	165	32	0	14	52	1.47
43698280--43698361	38	2.2	38	95	0	146	54	2	2	40	1.26
43698398--43698439	16	2.7	15	85	7	57	38	2	2	57	1.25
43700063--43700109	6	7.8	6	95	0	76	34	29	31	4	1.77
43703433--43703499	22	3.1	22	95	2	118	0	34	2	62	1.10
43703565--43703666	27	3.8	27	89	2	143	21	35	22	20	1.96
43704278--43704336	26	2.4	24	78	13	66	32	10	0	57	1.32
43704536--43704611	38	2.0	38	100	0	152	34	10	13	42	1.78
43705106--43705147	17	2.5	16	75	24	50	66	7	7	19	1.39
43706310--43706335	7	3.7	7	100	0	52	61	0	0	38	0.96
43707832--43707868	9	4.1	9	89	0	56	48	13	8	29	1.71
43715270--43715296	14	1.9	14	100	0	54	33	0	22	44	1.53
43715380--43715418	14	2.8	14	84	0	51	23	0	28	48	1.51
43722790--43722861	27	2.6	29	88	6	112	31	13	19	34	1.91
43728361--43728399	20	2.0	20	84	0	51	41	28	23	7	1.82
43730504--43730554	24	2.1	24	88	0	75	39	5	7	47	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43730514--43730560	24	2.0	24	91	0	76	40	6	8	44	1.60
43734075--43734109	18	1.9	18	100	0	70	45	5	22	25	1.74
43734750--43734801	24	2.2	24	89	0	77	36	3	9	50	1.54
43736488--43736567	34	2.3	33	81	14	83	22	5	33	38	1.76
43743421--43743469	19	2.5	19	83	3	53	46	0	28	24	1.53
43750000--43750114	42	2.7	42	74	11	101	28	26	18	26	1.98
43760459--43760520	29	2.1	29	84	0	79	25	12	29	32	1.93
43761164--43761334	72	2.4	72	92	0	279	28	23	25	22	1.99
43761235--43761559	114	2.9	114	83	3	406	25	23	25	24	2.00
43761366--43761744	186	2.0	186	91	2	609	25	24	26	24	2.00
43761462--43761634	72	2.4	72	89	4	260	25	26	25	23	2.00
43761164--43761867	299	2.4	299	88	2	1029	26	23	25	24	2.00
43761534--43761848	114	2.8	113	93	0	540	24	23	25	26	2.00
43762113--43762143	15	2.1	15	93	0	53	19	0	45	35	1.51
43762116--43762153	14	2.6	15	87	4	51	23	0	39	36	1.55
43762386--43762420	14	2.5	14	90	9	54	22	0	45	31	1.53
43763453--43763518	29	2.3	29	81	0	78	42	16	15	25	1.87
43768265--43768511	43	5.8	42	86	4	293	22	17	27	31	1.96
43768265--43768511	129	1.9	129	86	3	354	22	17	27	31	1.96
43772674--43772703	11	2.7	11	94	0	51	56	0	23	20	1.42
43773520--43773677	38	4.2	38	83	5	162	34	29	17	18	1.94
43773520--43773664	75	1.9	75	81	4	175	35	28	16	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43775517--43775568	27	1.9	27	88	0	77	32	26	5	34	1.80
43775560--43775778	27	8.1	26	76	8	161	23	22	10	42	1.84
43775560--43775778	54	4.1	54	75	9	196	23	22	10	42	1.84
43775560--43775778	81	2.7	81	84	4	264	23	22	10	42	1.84
43777306--43777405	25	4.0	26	89	3	136	33	14	20	33	1.92
43777306--43777405	51	2.0	49	84	7	130	33	14	20	33	1.92
43777322--43777496	25	7.0	25	75	5	95	32	17	18	32	1.94
43778825--43778906	28	3.0	28	87	1	121	34	12	23	30	1.91
43788339--43788388	25	2.0	25	84	7	66	24	18	32	26	1.97
43792808--43792833	13	2.0	13	100	0	52	53	7	0	38	1.30
43795193--43795227	3	11.7	3	100	0	70	34	0	34	31	1.58
43795773--43795895	42	2.9	42	90	0	192	47	16	4	31	1.65
43798349--43798395	24	2.0	24	84	16	62	31	0	17	51	1.46
43798552--43798690	40	3.5	40	73	11	117	28	20	22	29	1.98
43803442--43803478	9	4.1	9	100	0	74	45	10	10	32	1.74
43803514--43803555	21	2.0	21	81	9	50	23	33	0	42	1.55
43805410--43805473	25	2.6	25	80	7	67	14	23	21	40	1.90
43819567--43819599	17	1.9	17	93	0	57	18	36	3	42	1.66
43830761--43830806	9	5.1	9	91	0	65	47	15	8	28	1.74
43831726--43831755	15	1.9	16	93	6	53	30	20	10	40	1.85
43833530--43833598	21	3.3	21	87	0	111	39	18	26	15	1.91
43833519--43833596	42	1.9	40	92	5	129	39	19	25	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43834282--43834339	23	2.5	23	83	5	64	50	12	0	37	1.40
43839736--43839871	68	1.9	71	85	5	188	51	5	2	40	1.39
43844414--43844450	9	4.1	9	89	0	56	29	8	13	48	1.71
43858700--43858883	92	2.0	92	98	0	359	28	10	17	42	1.83
43864725--43864775	26	2.0	26	88	7	79	49	23	5	21	1.71
43867115--43867148	17	2.0	17	94	0	59	44	5	0	50	1.26
43869920--43870017	24	4.0	24	73	2	70	19	27	17	35	1.94
43869920--43869991	24	3.0	24	76	10	74	18	30	18	33	1.94
43870076--43870183	25	4.3	25	80	11	105	20	26	21	31	1.98
43870087--43870183	24	3.8	26	84	10	121	21	27	20	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211