genome.fa.s21.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  210  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65260009--65260081	31	2.5	29	78	14	87	26	1	4	68	1.15
65260301--65260352	5	10.4	5	100	0	104	40	0	0	59	0.97
65260745--65260783	3	13.0	3	94	0	69	2	33	30	33	1.72
65261787--65261836	22	2.2	23	82	10	59	48	2	2	48	1.24
65261964--65262010	13	3.6	13	82	0	58	74	2	2	21	1.03
65263542--65263575	17	2.0	17	88	0	50	82	8	0	8	0.85
65263671--65263733	10	6.4	10	71	14	51	76	0	23	0	0.79
65263669--65263732	14	4.9	14	80	14	66	76	0	23	0	0.79
65264037--65264493	152	3.0	155	78	9	496	51	6	10	31	1.61
65268431--65268899	248	1.9	234	81	9	521	39	17	8	34	1.81
65270540--65270602	10	6.6	9	74	13	54	30	4	1	63	1.24
65270529--65270615	20	4.3	19	75	10	75	27	3	2	66	1.20
65270576--65270615	21	1.9	21	89	0	62	25	5	0	70	1.08
65270735--65270816	31	2.8	29	79	16	91	28	0	2	69	1.01
65270761--65270803	20	2.2	20	87	8	61	23	0	2	74	0.93
65270754--65270816	15	4.1	16	80	14	62	26	0	1	71	0.95
65271033--65271093	5	12.4	5	92	3	106	39	0	1	59	1.08
65275033--65275109	38	2.0	38	100	0	154	36	12	14	36	1.84
65288158--65288767	154	4.0	152	89	6	918	50	7	10	31	1.65
65288158--65288767	298	2.0	305	89	6	945	50	7	10	31	1.65
65288766--65289478	149	4.7	155	88	5	1058	30	9	8	51	1.64
65295252--65295332	15	5.3	15	72	19	60	44	1	2	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65295976--65296028	27	2.0	25	85	7	70	43	1	1	52	1.23
65296178--65296218	18	2.3	17	88	12	64	75	0	12	12	1.05
65296243--65296274	17	2.0	17	88	11	50	62	15	21	0	1.32
65296866--65296924	6	9.8	6	78	7	57	44	0	5	50	1.24
65296870--65296918	18	2.7	18	96	0	89	46	0	6	46	1.27
65304117--65304310	96	2.0	96	98	0	379	44	5	24	25	1.74
65304557--65304771	42	5.3	41	76	14	198	27	24	31	16	1.97
65304607--65304816	84	2.5	84	83	6	239	29	26	28	16	1.97
65304608--65304816	42	5.0	42	80	8	203	29	26	27	16	1.97
65309940--65309979	20	2.0	20	95	0	71	60	2	0	37	1.11
65313429--65313464	18	2.0	18	94	0	63	63	5	0	30	1.17
65314789--65314844	25	2.2	25	84	6	69	5	5	19	69	1.28
65314800--65314852	24	2.3	23	81	15	58	7	3	15	73	1.20
65321888--65321960	29	2.4	31	77	4	78	39	15	12	32	1.84
65321919--65321985	31	2.3	27	76	14	62	43	11	8	35	1.73
65327131--65327171	22	1.9	22	90	5	66	43	12	0	43	1.41
65327472--65327497	7	3.7	7	100	0	52	11	0	0	88	0.52
65329144--65329438	141	2.1	141	96	0	545	27	26	24	21	1.99
65341327--65341358	16	2.1	15	94	5	55	50	12	6	31	1.65
65342810--65342851	21	2.0	21	85	0	57	38	0	7	54	1.28
65353893--65353959	32	2.1	32	83	5	82	43	8	13	34	1.75
65363302--65363343	14	3.2	13	80	9	50	64	19	2	14	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65364420--65364454	13	2.6	14	86	9	54	28	0	2	68	1.04
65382680--65382727	22	2.1	22	81	11	53	60	4	2	33	1.27
65384334--65384380	19	2.5	19	86	6	60	31	0	6	61	1.21
65386068--65386094	3	9.0	3	100	0	54	33	0	0	66	0.92
65387907--65387946	19	2.1	19	86	9	55	35	2	0	62	1.09
65388042--65388099	31	1.9	30	82	10	73	25	3	15	55	1.56
65389784--65389833	27	1.9	25	84	15	66	54	18	6	22	1.65
65392604--65392639	17	2.2	17	90	5	56	58	0	8	33	1.28
65395926--65395958	17	2.0	17	88	5	50	45	9	12	33	1.73
65397986--65398040	29	1.9	28	88	3	83	7	7	27	58	1.52
65398998--65399031	17	2.0	17	88	0	50	44	0	2	52	1.16
65401007--65401093	42	2.1	42	100	0	174	51	4	13	29	1.61
65414511--65414909	192	2.1	192	89	0	602	29	16	21	33	1.94
65417094--65417201	53	2.0	53	100	0	216	44	16	7	31	1.75
65417115--65417199	25	3.3	25	64	20	66	45	18	8	27	1.78
65417828--65417859	14	2.1	16	88	11	50	25	0	9	65	1.22
65422779--65422965	78	2.4	78	98	0	356	27	25	26	20	1.99
65428445--65428478	17	2.0	17	94	0	59	61	0	0	38	0.96
65428446--65428491	18	2.6	17	82	3	56	60	0	0	39	0.97
65434055--65434093	20	2.0	20	89	0	60	33	10	15	41	1.81
65443367--65443522	84	1.9	84	89	2	242	34	16	16	32	1.91
65449215--65449287	38	1.9	38	91	2	121	30	1	0	68	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65449245--65449298	26	2.1	26	82	6	65	27	0	1	70	0.98
65451343--65451370	6	4.7	6	100	0	56	32	0	17	50	1.47
65455880--65455933	26	2.0	27	82	10	67	48	3	0	48	1.19
65459846--65459901	29	1.9	29	100	0	112	48	5	3	42	1.43
65463922--65464221	158	1.9	158	95	0	546	36	15	15	33	1.89
65467515--65467562	10	4.4	10	84	10	51	31	0	4	64	1.12
65486163--65486225	31	2.0	31	84	6	83	41	6	12	39	1.69
65500979--65501058	40	2.0	40	100	0	160	37	10	15	37	1.80
65507797--65507836	10	4.0	10	81	12	55	32	0	2	65	1.06
65508489--65508540	26	1.9	28	84	7	72	40	7	11	40	1.70
65511604--65511779	83	2.1	81	87	8	250	22	5	19	52	1.67
65515579--65515603	3	8.3	3	100	0	50	32	0	0	68	0.90
65518875--65518995	50	2.4	50	80	4	145	36	8	19	35	1.82
65519162--65519204	22	2.0	22	81	9	52	34	2	2	60	1.22
65524068--65524395	126	2.6	127	82	7	375	45	21	12	20	1.83
65524068--65524383	127	2.5	125	83	6	388	46	20	12	20	1.83
65526041--65526071	16	1.9	16	93	0	53	87	3	9	0	0.66
65534283--65534323	18	2.3	18	88	12	59	70	0	0	29	0.87
65536319--65536411	18	5.2	18	82	0	123	27	23	16	32	1.96
65536320--65536411	36	2.6	36	87	0	139	28	23	16	31	1.96
65541003--65541095	18	5.2	18	82	0	114	27	22	16	33	1.95
65541004--65541095	36	2.6	36	85	0	130	28	22	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65548344--65548402	22	2.8	21	72	12	57	33	5	6	54	1.49
65558695--65558724	15	1.9	16	93	6	53	20	6	10	63	1.47
65566135--65566222	31	2.9	31	70	8	72	35	13	11	39	1.81
65569192--65569221	2	15.0	2	92	0	51	3	0	50	46	1.18
65569221--65569276	26	2.2	26	93	3	96	41	7	17	33	1.77
65574724--65574767	3	15.0	3	95	4	81	65	0	0	34	0.93
65575333--65575373	21	1.9	22	90	5	66	56	4	0	39	1.21
65581593--65581649	14	3.9	14	75	11	60	54	0	0	45	0.99
65597039--65597093	28	2.0	28	96	0	101	36	10	10	41	1.75
65597133--65597265	60	2.2	60	86	2	178	36	9	18	36	1.83
65615347--65626793	675	17.0	675	99	0	22671	33	13	15	37	1.86
65626770--65626801	16	2.0	16	100	0	64	31	6	25	37	1.81
65629901--65629945	21	2.1	22	87	4	65	2	13	6	77	1.05
65635404--65635429	6	4.3	6	100	0	52	50	19	15	15	1.79
65635413--65635516	45	2.3	45	85	6	140	43	18	16	22	1.88
65641723--65641778	22	2.7	20	81	13	67	26	3	3	66	1.25
65654593--65654644	27	1.9	27	84	7	70	55	11	1	30	1.46
65656205--65656302	44	2.2	45	88	1	144	26	27	15	30	1.96
65656381--65656570	44	4.3	43	69	11	134	26	24	18	31	1.98
65656320--65656568	132	1.9	132	94	1	437	27	23	19	29	1.98
65656653--65657937	134	9.6	134	94	0	2264	29	22	18	29	1.97
65658087--65658182	45	2.2	45	86	3	133	28	22	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65659438--65659520	44	1.9	43	87	2	121	16	22	18	42	1.89
65667097--65667148	27	1.9	27	84	7	70	55	11	1	30	1.46
65670009--65670060	19	2.7	19	84	3	68	30	3	1	63	1.23
65672941--65672980	16	2.5	16	88	8	55	47	2	2	47	1.29
65677366--65677446	39	2.1	39	88	4	119	38	4	6	50	1.49
65683029--65683058	12	2.4	13	94	5	53	36	6	33	23	1.81
65686689--65686735	12	3.7	12	83	11	58	27	2	2	68	1.13
65686888--65686950	26	2.5	26	82	12	78	44	9	0	46	1.36
65686919--65686956	18	2.1	19	90	5	60	39	10	0	50	1.37
65698558--65698709	81	1.9	83	88	5	238	56	3	7	31	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211