genome.fa.s21.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  165  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51377353--51377383	16	1.9	16	100	0	62	38	35	0	25	1.56
51380107--51380183	14	5.0	15	71	20	52	45	15	6	32	1.72
51380111--51380176	34	1.9	34	87	6	98	48	13	6	31	1.67
51380146--51380185	14	2.9	14	85	10	55	47	17	2	32	1.61
51381784--51381810	14	1.9	14	100	0	54	48	0	37	14	1.45
51382509--51382607	41	2.4	41	81	5	110	18	24	14	43	1.86
51382982--51383049	35	1.9	37	85	8	97	35	4	1	58	1.27
51399632--51399665	17	2.0	17	88	0	50	61	5	11	20	1.50
51411740--51411807	25	2.7	25	74	0	73	33	19	17	29	1.95
51421902--51421942	4	10.5	4	80	15	50	53	0	2	43	1.13
51421901--51421944	14	3.2	14	90	6	72	56	0	2	40	1.11
51422231--51422473	121	2.0	121	87	3	355	37	13	10	38	1.79
51423776--51423805	13	2.3	13	94	0	51	50	0	3	46	1.18
51425551--51425602	27	2.0	27	84	3	70	55	15	15	13	1.69
51428369--51428494	22	5.3	24	84	6	143	38	20	23	16	1.92
51429154--51429193	8	5.0	8	100	0	80	62	0	0	37	0.95
51436607--51436791	79	2.3	81	82	7	218	24	22	27	25	2.00
51436608--51436791	40	4.6	40	80	9	198	25	22	27	25	2.00
51436660--51436824	79	2.1	79	83	6	201	26	21	27	24	1.99
51438341--51438408	22	3.1	22	87	4	93	42	19	22	16	1.89
51438387--51438468	25	3.3	25	82	1	94	39	21	21	17	1.93
51439280--51439311	12	2.6	13	85	14	50	40	25	0	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51439573--51439604	8	4.0	8	91	0	55	62	3	0	34	1.11
51439569--51439610	16	2.6	17	81	11	61	61	2	0	35	1.09
51441998--51442033	19	1.9	18	88	5	54	33	0	5	61	1.19
51445410--51445474	32	2.0	33	87	3	96	41	18	21	18	1.90
51447638--51447684	21	2.2	21	88	0	67	17	27	27	27	1.97
51454592--51454649	22	2.6	22	86	0	80	27	18	29	24	1.98
51456018--51456060	23	1.9	23	90	4	70	44	11	4	39	1.62
51471804--51471887	26	3.2	26	76	5	89	22	19	21	36	1.95
51471991--51472045	28	2.0	28	100	0	110	21	21	23	32	1.98
51471981--51472042	28	2.1	30	88	8	92	22	22	22	32	1.98
51489415--51489536	61	2.0	61	86	0	172	42	11	18	27	1.84
51491910--51492048	68	2.0	68	100	0	278	36	8	20	33	1.84
51495700--51496031	127	2.6	126	87	6	435	31	21	21	25	1.98
51495700--51496033	42	8.0	42	87	4	430	32	21	20	25	1.98
51496464--51496541	33	2.4	33	95	0	138	2	42	17	37	1.64
51496452--51496524	12	6.3	12	81	9	89	4	39	16	39	1.68
51496509--51496577	21	3.3	21	79	4	77	1	40	21	36	1.63
51502075--51502217	27	5.3	27	96	0	268	36	0	14	48	1.44
51502080--51502205	9	14.0	9	82	0	162	35	0	16	47	1.47
51502408--51502468	23	2.6	24	84	10	81	59	1	6	32	1.33
51502432--51502497	34	2.1	31	82	17	84	54	3	9	33	1.47
51502444--51502647	34	5.7	34	77	12	185	54	2	7	35	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51502434--51502845	77	5.3	75	83	12	455	54	2	7	34	1.44
51502504--51502661	68	2.3	69	91	5	259	56	2	5	34	1.36
51502504--51502661	34	4.6	34	80	1	192	56	2	5	34	1.36
51502589--51502877	89	3.4	87	85	13	438	54	3	9	32	1.48
51502684--51502813	34	3.6	34	73	17	125	54	4	9	31	1.52
51502434--51502880	166	2.8	163	85	11	637	54	2	8	34	1.45
51502832--51502857	12	2.2	12	100	0	52	53	0	15	30	1.42
51504348--51504424	34	2.3	34	95	0	136	42	14	12	29	1.83
51504398--51504437	21	1.9	21	94	0	71	37	10	15	37	1.80
51504911--51505727	261	3.1	261	90	2	1239	34	21	18	26	1.96
51505565--51505804	115	2.1	116	93	1	412	30	20	19	28	1.97
51506243--51506323	14	5.8	13	74	17	58	46	29	1	22	1.59
51506243--51506322	21	3.8	20	70	15	54	47	28	1	22	1.59
51517049--51517080	15	2.1	15	94	0	55	53	0	15	31	1.43
51517366--51517419	27	2.0	27	96	0	99	29	12	11	46	1.77
51517504--51517593	44	2.0	44	86	0	126	37	10	2	50	1.48
51525602--51525652	23	2.2	23	92	0	84	41	21	9	27	1.84
51528417--51528463	24	1.9	25	83	12	62	44	2	10	42	1.51
51529584--51529666	30	2.8	30	81	5	87	33	24	16	25	1.96
51550759--51550860	7	14.6	7	100	0	204	28	0	14	56	1.39
51551502--51551544	18	2.4	18	84	7	52	18	30	9	41	1.82
51551786--51551826	21	2.0	21	85	9	57	29	46	19	4	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51552445--51552723	94	2.9	94	80	5	312	41	17	3	36	1.67
51554292--51554332	22	1.9	21	85	5	55	58	4	2	34	1.32
51567854--51567887	16	2.1	17	88	5	52	41	8	17	32	1.80
51568439--51568493	27	2.0	27	92	0	92	41	3	32	21	1.71
51571002--51571216	32	6.7	32	77	8	179	19	20	23	36	1.95
51570999--51571216	64	3.4	62	78	6	204	19	20	23	36	1.95
51579578--51579636	22	2.7	21	80	12	66	27	0	23	49	1.51
51579783--51579841	29	2.0	29	93	0	100	38	5	23	32	1.77
51579789--51579856	29	2.3	29	87	0	91	44	5	19	30	1.74
51585893--51586166	139	2.0	139	94	0	476	25	17	20	36	1.94
51587512--51587601	44	2.0	44	100	0	180	27	20	15	36	1.93
51587765--51587795	16	1.9	16	93	0	53	35	6	9	48	1.62
51590713--51590742	14	2.1	14	93	0	51	46	0	0	53	1.00
51590794--51590847	19	3.1	16	80	15	54	46	0	5	48	1.25
51590807--51590842	18	1.9	19	88	5	56	41	0	5	52	1.24
51590866--51591093	114	2.0	114	95	1	413	22	19	22	35	1.96
51612266--51612313	23	2.1	22	88	3	69	22	8	8	60	1.52
51633966--51634039	34	2.3	33	82	13	91	62	2	21	13	1.44
51645406--51645445	21	2.0	21	90	9	66	70	2	0	27	1.01
51651351--51651402	21	2.5	21	100	0	104	25	0	26	48	1.52
51651351--51651412	21	3.0	21	90	2	63	25	3	25	45	1.69
51653193--51653225	14	2.3	15	89	5	50	39	15	0	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51654084--51654124	10	4.2	10	82	14	50	51	7	0	41	1.30
51657949--51658139	68	2.8	68	76	1	177	26	20	14	38	1.91
51667475--51667567	2	46.5	2	97	0	177	0	1	48	50	1.07
51671419--51671473	20	2.7	21	80	8	69	36	3	3	56	1.34
51674684--51674851	84	2.0	84	96	0	309	41	13	16	29	1.86
51678344--51678413	29	2.5	26	77	18	70	44	1	0	54	1.09
51678362--51678411	13	3.2	16	70	18	52	48	0	0	52	1.00
51678354--51678411	29	2.0	30	83	10	75	46	1	0	51	1.11
51678365--51678430	29	2.2	30	86	10	91	42	0	0	57	0.98
51678420--51678456	19	1.9	19	88	0	56	48	2	0	48	1.15
51679499--51679562	29	2.3	28	84	7	85	23	18	6	51	1.69
51683947--51684008	31	2.0	31	100	0	124	32	19	6	41	1.77
51690917--51690958	7	6.0	7	100	0	84	42	0	57	0	0.99
51690910--51690956	21	2.2	21	92	0	76	48	0	51	0	1.00
51691495--51691534	11	3.6	11	90	6	55	22	32	0	45	1.53
51691610--51691637	12	2.3	12	100	0	56	60	0	0	39	0.97
51692746--51692770	7	3.6	7	100	0	50	28	0	12	60	1.32
51693421--51693460	18	2.2	18	95	0	71	22	30	7	40	1.81
51693939--51693993	9	6.2	9	95	2	85	30	0	7	61	1.23
51694032--51694087	21	2.5	22	91	8	96	50	26	0	23	1.50
51694024--51694095	21	3.3	22	84	11	87	47	23	0	29	1.52
51694139--51694163	12	2.1	12	100	0	50	16	24	36	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51695611--51695855	117	2.1	116	92	2	402	44	6	8	40	1.61
51695860--51696114	44	5.8	43	88	5	282	25	0	25	48	1.54
51695860--51696114	67	3.9	66	85	5	322	25	0	25	48	1.54
51695860--51696114	111	2.3	109	88	5	361	25	0	25	48	1.54
51696151--51696206	19	2.9	19	74	15	62	46	25	8	19	1.79
51696154--51696212	9	6.4	9	83	11	66	42	25	10	22	1.84
51696353--51696382	13	2.3	13	100	0	60	16	0	43	40	1.48
51698107--51698457	128	2.8	126	89	2	537	34	21	15	29	1.94
51700499--51700590	38	2.4	39	87	5	109	18	15	13	53	1.73
51700518--51700592	38	2.0	38	100	0	150	20	18	13	48	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211