genome.fa.s21.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  145  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45693116--45693315	44	4.5	44	75	3	152	27	18	25	29	1.98
45693333--45693435	44	2.3	44	80	5	109	24	25	25	25	2.00
45693757--45693800	7	6.7	7	87	10	58	18	0	6	75	1.02
45693763--45693800	18	2.1	19	90	5	60	18	0	5	76	0.97
45706507--45706624	43	2.8	43	81	3	123	23	18	27	30	1.98
45711610--45711654	23	2.0	23	100	0	90	17	22	26	33	1.96
45711611--45711661	23	2.2	23	92	0	84	19	23	27	29	1.98
45717735--45717819	37	2.3	37	87	0	125	35	31	8	24	1.85
45718065--45718108	21	2.1	21	86	0	61	43	15	6	34	1.74
45723821--45723992	92	1.9	93	84	6	233	33	14	16	35	1.89
45727205--45727266	29	2.1	29	90	0	97	33	19	19	27	1.96
45728738--45728771	13	2.7	13	90	4	52	61	5	0	32	1.20
45729609--45729641	14	2.3	15	89	5	50	0	9	6	84	0.76
45736647--45736671	13	1.9	13	100	0	50	32	12	16	40	1.84
45736685--45736780	32	2.9	33	74	10	88	36	12	15	35	1.85
45737505--45737539	15	2.4	14	86	9	52	34	20	5	40	1.76
45741037--45741062	7	3.7	7	100	0	52	15	0	38	46	1.46
45741030--45741064	14	2.5	14	80	0	52	14	0	31	54	1.40
45741115--45741278	76	2.2	76	82	6	190	32	5	11	50	1.61
45746459--45747067	156	3.9	154	80	10	696	29	10	7	52	1.63
45746841--45746870	11	2.6	12	89	10	53	23	6	0	70	1.11
45746824--45746885	13	5.0	12	78	11	54	24	4	6	64	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45746459--45747067	318	1.9	307	86	7	850	29	10	7	52	1.63
45747443--45747520	4	18.8	4	73	23	56	0	28	1	70	0.95
45747428--45747522	20	4.7	20	79	10	104	0	28	1	70	0.94
45747443--45747522	14	6.3	14	69	26	61	0	28	1	70	0.96
45747423--45747516	24	3.8	24	85	7	109	0	28	1	70	0.94
45747428--45747536	44	2.5	42	83	5	119	0	30	0	68	0.96
45747578--45747638	27	2.3	27	83	8	79	11	37	31	19	1.87
45747948--45747980	16	2.0	17	94	5	59	36	0	0	63	0.95
45747971--45748016	19	2.4	19	82	17	60	34	2	0	63	1.07
45752399--45752473	37	2.0	37	100	0	150	25	13	26	34	1.93
45753068--45753103	10	3.5	10	85	7	54	11	11	2	75	1.16
45760641--45760669	14	2.1	14	100	0	58	44	13	27	13	1.82
45761118--45761152	2	17.5	2	87	0	52	54	2	42	0	1.15
45773071--45773216	72	2.0	71	93	1	247	34	15	25	24	1.95
45784471--45784496	13	2.0	13	100	0	52	46	0	0	53	1.00
45784488--45784554	35	1.9	35	82	11	84	59	1	2	35	1.22
45792063--45792171	3	36.3	3	84	3	130	64	0	32	2	1.14
45792908--45792940	18	1.9	17	88	11	50	48	0	21	30	1.50
45793795--45793838	22	2.0	22	81	4	52	38	4	15	40	1.68
45798706--45798760	9	6.1	9	74	16	51	47	0	30	21	1.51
45798993--45799023	5	6.2	5	100	0	62	80	0	0	19	0.71
45800028--45800072	20	2.1	22	84	12	58	13	11	8	66	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45802846--45802894	24	2.0	24	100	0	98	20	22	16	40	1.91
45804841--45804885	22	2.0	22	100	0	90	17	4	17	60	1.53
45806165--45806204	19	2.2	18	90	4	62	57	5	2	35	1.34
45807546--45807627	37	2.2	37	82	8	96	43	7	25	23	1.79
45817631--45817672	12	3.5	12	90	0	66	26	14	23	35	1.93
45817631--45817669	8	4.9	8	87	0	60	25	12	25	35	1.92
45821661--45821702	20	2.1	20	95	0	75	38	11	19	30	1.88
45828249--45828385	67	2.0	67	100	0	274	30	29	17	22	1.97
45830865--45830963	33	3.0	33	81	0	117	48	16	19	16	1.81
45834397--45834431	16	2.1	17	89	10	54	20	2	25	51	1.61
45834437--45834484	11	4.5	10	87	10	60	0	27	2	70	0.98
45834437--45834482	16	2.8	16	83	9	58	0	26	2	71	0.97
45834478--45834527	25	2.0	26	84	4	66	16	8	12	64	1.49
45845331--45845414	41	2.0	41	90	0	132	42	16	19	21	1.89
45846551--45846588	18	2.1	18	90	0	58	31	13	31	23	1.93
45848516--45848563	25	1.9	25	95	0	87	12	37	29	20	1.90
45849708--45849879	75	2.3	75	85	2	229	37	20	18	23	1.94
45849756--45849906	35	4.2	35	70	13	92	37	21	17	23	1.94
45852761--45853177	36	11.4	37	82	3	488	34	21	15	29	1.94
45852761--45853177	73	5.7	74	82	3	479	34	21	15	29	1.94
45852761--45853168	109	3.7	109	88	1	593	34	21	15	29	1.94
45855724--45855831	25	4.3	25	85	0	117	34	12	15	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45855747--45855866	50	2.4	49	83	2	141	35	14	17	33	1.90
45855747--45855856	25	4.4	25	82	0	121	34	15	16	33	1.90
45857146--45857190	16	2.7	17	86	6	65	17	0	11	71	1.14
45861216--45861240	12	2.1	12	100	0	50	48	0	8	44	1.32
45862534--45862583	26	1.9	26	95	0	91	34	8	2	56	1.40
45872615--45872648	17	2.0	17	88	0	50	55	20	2	20	1.56
45873880--45873910	4	8.0	4	92	7	55	74	0	0	25	0.82
45874211--45874304	31	3.0	31	96	3	179	42	15	9	31	1.80
45878834--45878879	13	3.4	13	80	11	56	0	10	13	76	1.03
45878847--45878912	20	3.2	20	82	2	69	4	13	7	74	1.20
45878834--45878887	28	1.9	28	85	7	74	1	12	11	74	1.16
45878861--45878919	21	2.8	20	73	14	57	5	15	6	72	1.23
45878905--45878967	9	6.4	9	78	14	63	0	6	14	79	0.92
45879515--45879608	31	3.0	31	96	3	179	42	15	9	31	1.80
45880431--45880473	21	2.0	22	90	4	70	27	11	27	32	1.92
45881306--45881348	7	5.7	7	79	15	50	27	2	0	69	1.00
45881311--45881346	16	2.2	16	90	5	54	22	2	0	75	0.94
45881904--45881936	2	17.0	2	93	6	59	48	0	0	51	1.00
45887387--45887423	18	2.1	18	90	10	58	70	5	5	18	1.27
45897630--45897659	3	10.0	3	92	0	51	0	30	0	70	0.88
45898795--45898826	13	2.5	13	94	0	55	18	9	12	59	1.59
45912165--45912198	7	4.7	7	85	7	50	14	0	38	47	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45920401--45920515	41	2.8	41	94	2	196	26	20	24	29	1.99
45927932--45928169	41	5.8	41	97	1	442	26	19	23	30	1.98
45927932--45928211	123	2.3	123	90	3	449	27	20	23	29	1.99
45929822--45929928	38	2.8	38	89	0	142	31	13	22	32	1.92
45931336--45931370	2	17.5	2	93	0	61	0	48	0	51	1.00
45938260--45938298	20	1.9	21	94	5	71	46	35	0	17	1.49
45938199--45938301	42	2.5	42	75	12	104	42	36	0	20	1.52
45939078--45939142	34	1.9	34	83	0	85	52	23	0	24	1.48
45943588--45943839	24	10.8	24	70	15	152	55	4	5	34	1.44
45943585--45943873	69	4.1	67	75	10	199	54	5	5	34	1.47
45943598--45943844	69	3.6	68	76	12	204	55	4	5	33	1.44
45943665--45943870	70	3.0	67	77	9	189	54	5	5	33	1.48
45944671--45944746	19	3.7	21	80	15	61	36	17	7	38	1.79
45944674--45944718	22	2.0	22	86	4	63	33	17	6	42	1.76
45944697--45944750	19	2.8	19	94	0	90	35	16	9	38	1.81
45945027--45945120	44	2.1	45	90	2	145	30	24	15	28	1.96
45945202--45945476	132	2.1	132	88	0	406	25	25	20	28	1.99
45945480--45948514	45	68.1	45	86	1	3852	30	24	16	28	1.96
45945492--45945566	35	2.1	35	87	0	105	30	24	17	28	1.97
45945617--45945724	35	3.1	35	91	0	171	29	22	20	27	1.98
45950732--45950799	11	6.2	11	75	11	50	8	13	0	77	0.98
45950784--45950816	9	3.8	9	84	8	50	15	0	3	81	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45950785--45950816	17	1.9	16	100	0	55	15	0	3	81	0.82
45953381--45953415	16	2.2	16	89	0	52	42	22	17	17	1.88
45955146--45955338	23	8.3	23	71	11	99	55	4	5	34	1.43
45955136--45955293	70	2.3	69	81	6	185	55	4	6	33	1.45
45955136--45955329	70	2.8	68	76	8	167	54	5	6	34	1.48
45956158--45956211	19	2.8	19	88	0	81	31	16	11	40	1.84
45961414--45961438	8	3.1	8	100	0	50	24	0	36	40	1.55
45964081--45964193	49	2.3	49	84	0	163	27	13	19	39	1.89
45968920--45969007	42	2.1	42	97	0	167	29	29	11	29	1.92
45977018--45977389	185	2.0	185	96	0	690	23	30	15	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211