genome.fa.s21.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  163  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50916752--50916812	2	30.5	2	96	0	113	50	47	1	0	1.10
50919967--50920015	25	2.0	25	100	0	98	24	20	18	36	1.94
50921169--50921227	30	2.0	30	96	0	109	59	11	3	25	1.48
50921260--50921302	22	2.0	22	85	0	59	55	9	13	20	1.66
50926875--50926900	11	2.4	11	100	0	52	7	38	7	46	1.61
50931458--50931532	32	2.3	32	84	8	100	26	40	4	29	1.74
50931613--50931702	42	2.1	42	89	0	135	36	27	1	34	1.65
50931630--50931718	42	2.3	39	86	9	119	30	30	0	39	1.57
50931795--50931820	5	5.2	5	100	0	52	23	19	19	38	1.93
50934644--50934781	64	2.1	66	82	9	165	38	26	9	26	1.86
50942479--50942564	24	3.6	24	90	0	136	44	6	27	20	1.77
50942480--50942575	48	2.0	48	87	0	138	44	7	26	21	1.78
50942640--50942695	21	2.8	20	78	5	58	25	23	14	37	1.92
50942659--50942849	21	9.1	21	64	6	73	18	24	14	42	1.88
50942674--50942857	42	4.4	42	83	1	208	17	25	15	41	1.88
50942653--50942884	84	2.8	84	81	2	277	18	23	15	42	1.88
50945026--50945095	22	3.2	22	76	15	72	40	20	25	14	1.90
50946633--50946715	25	3.3	25	78	6	69	20	28	20	30	1.98
50946674--50946741	25	2.7	25	78	13	68	22	29	19	29	1.98
50951067--50951208	57	2.4	57	82	10	171	29	19	26	24	1.99
50951337--50951466	67	1.9	67	98	0	251	20	19	33	26	1.96
50957809--50958100	50	5.7	50	79	3	210	28	21	27	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50957809--50958051	50	4.7	50	81	5	236	27	21	27	23	1.99
50958300--50958338	4	9.8	4	82	0	51	51	2	23	23	1.61
50961418--50961455	17	2.2	17	90	0	58	23	28	23	23	1.99
50962003--50962032	10	2.8	11	90	10	53	66	0	33	0	0.92
50972600--50972682	3	27.7	3	97	0	94	33	42	0	24	1.55
50975823--50975852	13	2.3	13	100	0	60	53	16	0	30	1.44
50976359--50976500	24	5.8	24	73	8	83	31	22	28	17	1.97
50976491--50976559	23	2.9	23	75	12	68	36	23	24	15	1.94
50980889--50980916	7	4.0	7	100	0	56	14	0	0	85	0.59
50983533--50983635	17	6.6	16	66	26	53	42	1	2	52	1.27
50983545--50983593	18	2.5	19	87	9	64	42	0	2	55	1.11
50985416--50985531	5	23.4	5	97	0	216	40	0	0	58	1.04
50986339--50986381	18	2.3	19	80	8	52	39	0	9	51	1.34
50986489--50986601	41	2.8	40	80	9	133	25	16	22	35	1.95
50986494--50986595	37	2.6	38	83	6	125	25	17	24	32	1.97
50988719--50988772	27	1.9	29	81	7	67	57	7	1	33	1.37
50997492--50997567	36	2.1	38	80	11	88	52	1	6	39	1.36
50998100--50998167	21	3.0	24	79	14	72	39	16	4	39	1.68
50998123--50998198	21	3.7	21	91	7	129	38	14	9	38	1.78
50998136--50998199	19	3.3	19	95	4	110	37	15	9	37	1.80
50998693--50998871	44	4.1	44	65	12	107	21	24	23	30	1.99
50998687--50999022	132	2.5	132	90	0	503	24	25	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50998995--50999904	45	20.4	45	85	2	1212	31	24	15	28	1.96
50999111--50999185	35	2.1	35	95	0	132	28	25	21	25	1.99
51001216--51001331	61	1.9	60	82	5	144	14	25	12	47	1.80
51004916--51004950	16	2.2	16	94	0	61	42	20	17	20	1.89
51006586--51006629	23	2.0	22	90	4	70	56	2	6	34	1.38
51007319--51007376	22	2.6	22	81	7	64	41	17	5	36	1.72
51007355--51007409	21	2.7	21	88	5	87	36	12	10	40	1.79
51007747--51007817	35	2.0	35	97	0	133	59	11	1	28	1.40
51012666--51012699	16	2.1	16	94	0	59	41	0	2	55	1.15
51013523--51013623	17	5.9	16	70	16	69	30	0	3	64	1.18
51013523--51013623	8	11.9	8	74	15	69	30	0	3	64	1.18
51013555--51013623	25	2.7	26	84	4	86	30	1	4	63	1.22
51015040--51015064	12	2.1	12	100	0	50	60	8	0	32	1.26
51015061--51015113	20	2.5	21	81	12	63	56	3	3	35	1.35
51015069--51015114	20	2.2	20	88	3	65	60	4	2	32	1.28
51015677--51015714	20	1.9	20	88	0	58	34	0	2	63	1.09
51015765--51015818	23	2.2	24	80	9	65	42	0	0	57	0.98
51018819--51018856	5	7.6	5	96	0	67	36	39	0	23	1.55
51019889--51019917	6	4.8	6	100	0	58	82	0	0	17	0.66
51026179--51026210	13	2.4	13	94	5	55	75	3	9	12	1.16
51028111--51028167	9	6.0	9	74	8	51	15	5	3	75	1.12
51030217--51030268	26	2.0	26	88	0	77	30	7	23	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51030851--51030880	12	2.5	12	94	0	51	30	10	10	50	1.69
51038393--51038438	18	2.4	18	82	10	56	43	2	2	52	1.25
51038450--51038501	14	3.8	14	84	2	61	73	1	7	17	1.16
51038463--51038533	9	7.9	9	76	9	56	71	2	14	11	1.24
51039440--51039515	23	3.4	23	73	10	68	21	23	19	35	1.96
51039487--51039536	21	2.4	21	89	0	73	14	30	26	30	1.94
51047520--51047583	2	32.0	2	100	0	128	50	0	50	0	1.00
51058376--51058562	41	4.2	42	82	16	227	57	0	3	39	1.15
51058376--51058562	52	3.8	51	77	19	200	57	0	3	39	1.15
51058413--51058571	41	3.9	41	91	6	245	59	0	3	37	1.14
51058590--51058614	5	5.0	5	100	0	50	0	40	60	0	0.97
51061360--51061466	51	2.2	50	80	6	121	31	2	8	57	1.43
51062760--51062874	14	8.1	14	77	9	101	31	31	15	21	1.95
51062758--51062838	42	1.9	42	87	0	117	29	28	18	23	1.98
51062810--51062870	30	2.0	31	87	12	92	29	39	13	18	1.88
51062946--51063050	45	2.3	45	76	0	129	32	19	15	33	1.92
51062946--51063050	22	4.7	23	72	6	90	32	19	15	33	1.92
51063078--51063117	16	2.5	16	87	0	62	37	25	12	25	1.91
51063093--51063133	15	2.6	16	84	7	57	41	21	14	21	1.89
51068131--51068186	24	2.3	24	100	0	112	57	0	19	23	1.41
51070451--51070532	23	3.6	22	80	3	83	35	15	15	32	1.90
51070829--51070925	16	6.1	16	75	15	85	41	7	6	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51074389--51074459	16	4.4	16	83	1	88	43	9	5	40	1.61
51087739--51087772	16	2.1	16	88	0	50	64	2	14	17	1.40
51092278--51092351	29	2.5	30	84	6	89	12	35	9	43	1.74
51092934--51092984	7	6.9	7	85	12	66	43	3	0	52	1.19
51092940--51092992	14	3.4	15	84	12	63	43	3	0	52	1.19
51097073--51097099	13	2.1	13	100	0	54	29	18	7	44	1.77
51097953--51098023	36	2.0	35	89	8	108	38	28	1	32	1.66
51102887--51102950	30	2.1	32	85	5	87	50	4	3	42	1.39
51105554--51105631	30	2.6	30	77	0	84	33	15	21	29	1.94
51108852--51108886	11	3.2	11	91	0	52	54	0	8	37	1.31
51110174--51110207	17	2.0	17	94	0	59	52	2	11	32	1.53
51111114--51111155	21	2.0	21	85	0	57	30	7	19	42	1.78
51126770--51127217	222	2.0	222	96	0	815	35	12	21	30	1.90
51127496--51127616	29	4.2	29	77	1	100	36	17	27	19	1.94
51132050--51132099	19	2.5	20	81	18	61	22	4	8	66	1.35
51132229--51132267	4	9.8	4	88	0	51	17	2	5	74	1.12
51132341--51132367	11	2.5	11	100	0	54	18	7	0	74	1.05
51132321--51132381	20	3.1	19	83	9	61	21	6	1	70	1.19
51137254--51137352	29	3.4	29	83	2	128	38	23	26	12	1.90
51146180--51146227	24	2.0	24	100	0	96	37	4	12	45	1.61
51151466--51151521	24	2.3	24	81	0	67	51	8	7	32	1.60
51156439--51156495	27	2.2	26	81	15	64	36	7	3	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51159160--51159283	59	2.1	60	89	1	187	50	6	16	26	1.70
51160399--51160433	16	2.3	15	90	5	52	54	8	0	37	1.31
51170531--51170566	18	2.0	18	100	0	72	22	0	38	38	1.54
51171095--51171144	21	2.4	21	83	6	66	52	0	2	46	1.12
51176048--51176077	4	7.5	4	100	0	60	50	23	0	26	1.50
51177100--51177141	18	2.3	18	84	15	52	28	4	2	64	1.26
51179233--51179280	24	2.0	24	100	0	96	33	16	20	29	1.95
51179959--51180041	42	2.0	42	100	0	166	28	28	16	25	1.97
51181572--51181650	25	3.0	27	78	12	67	34	24	21	20	1.97
51181719--51181767	24	2.0	25	88	4	73	34	18	22	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211