genome.fa.s21.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  102  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31926878--31926911	15	2.3	15	90	5	52	26	0	5	67	1.13
31929049--31930212	51	23.6	51	80	15	1262	46	21	3	29	1.68
31929049--31930200	74	15.6	74	82	12	1355	46	21	3	28	1.68
31929063--31930200	23	46.4	23	83	13	1334	46	21	3	28	1.68
31932283--31932550	126	2.1	124	84	4	342	32	22	15	29	1.95
31935994--31936035	18	2.3	18	80	8	50	26	0	9	64	1.24
31937420--31937475	29	1.9	29	85	0	76	33	16	16	33	1.91
31938743--31938841	40	2.4	40	83	3	126	29	16	19	35	1.93
31939741--31939770	14	2.1	14	100	0	60	46	6	13	33	1.69
31940195--31940235	15	2.7	15	88	7	57	41	9	19	29	1.83
31943824--31943872	20	2.5	20	100	0	98	38	14	4	42	1.64
31945601--31945648	25	1.9	25	95	0	87	39	25	20	14	1.91
31949029--31949122	35	2.5	39	70	15	90	28	22	23	25	1.99
31949233--31949280	22	2.2	22	92	0	78	22	18	20	37	1.94
31951494--31951544	25	2.0	25	96	0	93	31	17	23	27	1.97
31958158--31958182	3	8.3	3	100	0	50	36	0	0	64	0.94
31958537--31958600	31	2.1	31	87	0	92	39	4	7	48	1.53
31962630--31962770	37	3.9	36	73	10	101	34	14	14	36	1.87
31966541--31966590	13	3.2	16	70	18	52	48	0	0	52	1.00
31976270--31976492	94	2.3	96	82	2	288	39	2	17	39	1.64
31976532--31976959	126	3.4	126	91	1	682	33	20	21	25	1.97
31977534--31977559	7	3.7	7	100	0	52	57	15	0	26	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31978494--31978557	18	3.6	18	69	23	55	60	3	0	35	1.12
31978731--31978776	11	4.1	11	88	2	65	45	0	28	26	1.54
31978728--31978787	22	2.7	22	85	12	79	46	0	28	25	1.53
31978736--31978785	12	4.3	12	83	16	61	46	0	30	24	1.53
31981051--31981115	27	2.4	27	82	2	78	44	12	12	30	1.79
31982221--31982272	21	2.5	22	87	6	72	30	3	3	61	1.32
31986099--31986151	18	2.6	20	77	20	56	11	13	26	49	1.75
31988151--31988353	67	3.0	67	76	12	218	41	3	4	49	1.41
31988267--31988341	22	3.5	22	73	20	70	42	2	2	52	1.29
31989737--31989898	43	3.9	41	76	12	159	22	18	27	30	1.97
31995143--31995271	35	3.7	34	86	4	170	17	12	31	38	1.87
31999238--31999299	17	3.4	17	69	26	54	27	1	24	46	1.62
31999209--31999388	39	4.6	39	92	0	279	30	3	21	43	1.70
32003552--32004325	387	2.0	387	100	0	1548	33	14	19	32	1.93
32005425--32005482	31	1.9	29	82	6	71	39	3	5	51	1.41
32006876--32006910	11	3.2	11	88	11	54	68	2	0	28	1.04
32006877--32006914	11	3.3	12	82	10	53	65	2	0	31	1.06
32007177--32007219	22	1.9	23	81	13	54	25	23	0	51	1.49
32011282--32011425	61	2.4	57	83	5	180	52	3	1	43	1.27
32016518--32016892	38	9.9	38	82	5	395	15	16	24	44	1.86
32016502--32016902	76	5.3	75	82	4	437	14	15	25	44	1.85
32018610--32018719	42	2.6	42	91	2	159	19	29	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32024647--32024716	34	2.1	34	100	0	140	28	25	17	28	1.97
32033704--32033750	20	2.6	18	80	10	51	59	0	12	27	1.34
32040839--32040985	40	3.6	40	81	3	134	29	25	11	32	1.91
32040880--32041009	40	3.2	40	82	0	152	30	26	13	30	1.93
32044667--32044717	3	17.0	3	100	0	102	33	0	0	66	0.92
32044737--32044775	18	2.2	18	85	0	51	56	5	0	38	1.22
32045123--32045161	3	13.0	3	86	0	51	25	0	2	71	0.98
32046155--32046204	23	2.2	22	82	3	55	28	12	30	30	1.92
32046890--32046928	10	3.7	10	80	12	51	64	0	35	0	0.94
32047672--32047714	22	2.0	22	90	0	68	32	9	0	58	1.30
32049705--32049740	11	3.2	11	96	4	63	19	36	0	44	1.51
32049704--32049759	23	2.5	23	81	18	73	23	32	0	44	1.53
32049704--32049756	22	2.4	22	82	17	65	22	33	0	43	1.54
32049704--32049759	11	5.0	11	80	20	55	23	32	0	44	1.53
32049718--32049817	51	2.0	51	85	0	137	26	26	1	47	1.59
32052278--32052348	21	3.4	21	90	0	115	45	26	1	26	1.62
32052347--32052443	22	4.8	21	72	21	82	52	30	0	16	1.44
32052324--32052388	29	2.3	28	86	7	87	46	32	0	21	1.52
32052340--32052446	37	2.9	36	87	6	144	52	31	0	15	1.44
32052376--32052410	15	2.3	15	95	0	61	54	31	0	14	1.40
32052413--32052465	14	3.7	14	75	5	52	49	30	0	20	1.50
32055650--32056198	125	4.4	125	82	5	662	29	22	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32055650--32056196	250	2.2	250	89	2	830	29	22	17	30	1.96
32060160--32060198	19	1.9	19	85	10	51	30	2	20	46	1.64
32060213--32060369	77	2.0	77	97	0	296	33	3	19	43	1.67
32061647--32061720	20	3.7	20	83	0	94	13	28	31	27	1.94
32065398--32065439	15	3.1	15	74	25	56	50	4	0	45	1.23
32065391--32065439	26	2.0	24	92	8	80	57	4	0	38	1.18
32065439--32065465	14	1.9	14	100	0	54	25	0	29	44	1.54
32065442--32065590	7	20.9	7	72	11	52	24	0	29	44	1.59
32065501--32065633	50	2.7	49	84	4	160	21	1	34	42	1.62
32065501--32065591	7	12.7	7	77	9	67	19	0	32	47	1.50
32065884--32066027	7	21.0	6	70	16	54	20	0	29	48	1.55
32065879--32065932	27	2.0	28	85	3	74	16	0	37	46	1.48
32065884--32066112	14	16.9	13	65	18	67	23	0	30	45	1.59
32065896--32066027	21	6.4	19	68	20	61	21	0	28	49	1.55
32066016--32066080	29	2.3	28	89	2	94	24	0	32	43	1.55
32065973--32066112	7	19.7	7	72	8	50	23	0	30	45	1.58
32065999--32066109	36	3.1	36	75	8	102	25	0	32	41	1.62
32066569--32066635	19	3.5	20	73	13	52	49	4	0	46	1.22
32067286--32067377	22	4.2	22	86	5	105	29	28	0	42	1.56
32067286--32067377	44	2.1	44	84	8	116	29	28	0	42	1.56
32067327--32067429	52	2.0	50	83	12	129	32	33	0	34	1.58
32067379--32067420	22	1.9	22	90	0	66	33	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32067458--32067526	30	2.4	30	85	4	97	36	0	1	62	1.04
32067616--32067671	24	2.3	23	77	19	60	28	0	5	66	1.14
32069772--32069806	18	2.0	18	88	5	54	48	20	0	31	1.50
32069782--32070647	28	33.6	26	78	17	724	47	22	0	29	1.52
32069769--32070647	51	17.0	51	78	14	851	47	22	0	29	1.53
32069937--32070100	23	6.8	20	89	6	67	48	21	0	29	1.50
32070410--32070481	34	2.1	34	84	0	90	43	27	0	29	1.56
32070450--32070647	23	8.3	23	79	13	222	47	23	0	28	1.51
32073619--32073823	86	2.4	86	95	1	369	33	22	20	23	1.97
32073733--32073986	123	2.1	124	85	3	343	32	23	14	29	1.94
32074028--32074071	23	1.9	23	86	9	63	36	38	9	15	1.80
32077527--32077668	43	3.3	43	83	2	169	23	10	28	38	1.88
32078587--32078631	22	1.9	24	86	13	67	48	4	4	42	1.43
32079545--32079604	31	1.9	31	89	0	93	40	8	15	36	1.77
32081081--32081146	33	2.0	33	96	0	123	34	6	22	36	1.79
32085490--32085776	124	2.3	125	89	1	441	31	20	20	27	1.98
32088636--32088846	116	1.8	116	87	2	316	45	5	7	41	1.55
32089021--32089060	21	1.9	21	84	0	53	2	22	45	30	1.66
32089323--32089365	18	2.4	18	88	0	59	44	9	27	18	1.80
32091164--32091233	11	6.4	11	77	11	72	45	0	31	22	1.53
32091164--32091233	33	2.1	33	84	10	90	45	0	31	22	1.53
32091168--32091235	22	3.1	21	85	8	84	47	0	29	23	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32096887--32096918	14	2.1	16	88	11	50	0	3	15	81	0.82
32099718--32099792	28	2.7	28	82	11	100	56	1	0	42	1.08
32099691--32099803	30	3.6	31	80	12	108	58	3	0	38	1.15
32101446--32101520	21	3.6	21	77	0	60	36	18	6	38	1.77
32107749--32107795	21	2.2	21	88	0	67	31	12	23	31	1.92
32108629--32108687	27	2.2	27	90	0	91	6	6	13	72	1.25
32112054--32112104	26	1.9	27	84	4	68	19	9	13	56	1.65
32113659--32113709	20	2.6	19	78	9	57	27	13	21	37	1.91
32113816--32113844	9	3.3	9	90	9	51	58	0	0	41	0.98
32113820--32113886	29	2.3	29	78	16	77	59	1	0	38	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211