genome.fa.s21.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  183  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56632892--56632958	27	2.5	26	75	7	62	53	1	1	43	1.19
56632932--56632983	21	2.6	19	80	11	59	57	3	1	36	1.28
56635455--56635587	43	3.1	44	86	3	180	33	24	15	26	1.95
56635476--56635613	43	3.2	43	85	3	134	31	27	15	25	1.95
56645934--56645959	2	13.0	2	100	0	52	0	50	0	50	1.00
56648733--56648770	15	2.4	16	82	8	51	63	0	5	31	1.17
56648728--56648777	25	2.0	25	84	7	66	64	0	6	30	1.18
56652088--56652199	39	2.9	39	95	0	206	63	24	2	9	1.38
56652969--56652993	13	1.9	13	100	0	50	60	0	32	8	1.26
56654261--56654550	33	8.6	33	74	17	190	20	20	26	31	1.98
56654328--56654405	27	2.9	27	98	0	147	16	23	30	29	1.96
56654353--56654548	108	1.9	102	90	8	313	20	20	27	31	1.98
56669949--56670040	19	4.8	19	91	0	148	39	9	15	35	1.80
56670697--56670732	16	2.2	16	90	0	54	38	2	8	50	1.47
56670818--56670866	24	2.0	25	88	8	73	28	8	4	59	1.45
56671492--56671688	98	2.0	98	96	0	367	27	10	24	37	1.88
56676317--56676347	16	1.9	16	93	0	53	38	3	9	48	1.52
56677154--56677350	98	2.0	98	93	0	340	27	10	24	37	1.88
56684835--56685031	98	2.0	98	95	0	358	38	24	9	28	1.86
56686526--56686657	19	6.8	19	91	3	219	35	15	10	38	1.82
56686519--56686657	59	2.4	57	89	6	219	35	15	10	38	1.81
56696118--56696251	28	4.8	29	88	6	204	31	23	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56696118--56696256	56	2.5	56	88	4	226	31	23	22	22	1.98
56696358--56696412	26	2.1	26	96	0	101	34	23	21	20	1.97
56696528--56696561	15	2.3	15	90	10	52	38	20	5	35	1.77
56702400--56702648	50	4.8	50	85	4	284	20	29	24	26	1.99
56702399--56702648	100	2.4	104	88	6	357	20	29	24	26	1.99
56702743--56702774	13	2.5	13	94	0	55	56	12	0	31	1.37
56702986--56703043	30	1.9	30	89	0	89	31	24	3	41	1.71
56706052--56706080	14	2.1	14	100	0	58	27	13	6	51	1.66
56710108--56710178	15	4.8	15	80	13	67	30	1	4	63	1.22
56710122--56710176	5	11.2	5	81	11	60	30	1	3	63	1.22
56711585--56711618	17	2.0	17	88	0	50	32	2	2	61	1.26
56719977--56720099	43	2.9	43	87	2	187	30	25	19	24	1.98
56720080--56720122	22	2.0	22	95	0	77	16	23	20	39	1.92
56720102--56720223	44	2.8	44	86	2	167	31	27	13	27	1.94
56726396--56726457	31	2.0	31	96	0	115	43	16	8	32	1.77
56732430--56732491	31	2.0	31	96	0	115	40	16	11	32	1.83
56732583--56732607	3	8.3	3	100	0	50	68	0	0	32	0.90
56739176--56739648	164	2.9	164	97	0	901	27	16	17	38	1.91
56744028--56744091	5	12.2	5	79	9	65	28	1	0	70	0.97
56756461--56756498	6	6.3	6	96	0	58	31	0	39	28	1.57
56757633--56757686	21	2.4	21	84	9	63	66	7	0	25	1.17
56757914--56757952	20	2.0	20	89	0	60	25	17	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56758627--56758690	3	22.3	3	75	15	55	1	29	0	68	0.99
56758629--56758684	17	3.2	17	79	2	58	1	28	0	69	0.98
56765503--56765616	41	2.8	41	83	0	129	29	18	21	30	1.97
56770379--56770426	17	2.8	16	78	12	51	37	0	16	45	1.48
56776500--56776554	29	1.9	28	82	10	67	36	12	1	49	1.52
56777042--56777176	71	1.9	71	87	0	198	31	17	17	34	1.92
56783934--56784075	70	2.0	72	90	4	225	28	16	19	35	1.93
56786108--56786171	21	3.1	21	66	25	55	59	6	1	32	1.32
56786014--56786073	9	6.7	9	74	12	52	66	1	1	30	1.11
56786113--56786177	19	3.3	19	75	14	69	64	6	1	27	1.26
56786360--56786418	19	3.0	20	78	12	59	28	8	1	61	1.35
56786457--56786499	19	2.3	19	87	0	59	39	4	2	53	1.34
56786497--56786589	29	3.2	29	75	15	84	31	3	1	64	1.16
56786497--56786583	30	3.0	29	77	15	83	32	2	1	64	1.13
56787185--56787214	13	2.3	13	94	0	51	53	6	0	40	1.27
56802797--56802911	19	5.7	21	86	8	80	42	13	3	40	1.62
56802797--56802854	22	2.6	22	81	7	64	43	17	1	37	1.59
56802833--56802917	19	4.5	19	98	0	161	41	11	5	41	1.66
56803252--56804146	132	6.8	132	92	0	1497	28	23	19	28	1.98
56803367--56804075	44	16.1	45	62	14	113	28	22	19	29	1.98
56806390--56806463	36	2.1	36	100	0	148	62	5	18	13	1.50
56806390--56806446	18	3.0	20	62	27	52	59	7	19	14	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56806397--56806457	20	3.2	20	65	25	60	63	6	18	11	1.47
56806407--56806467	17	3.5	17	68	24	54	65	3	18	13	1.39
56811066--56811123	22	2.6	22	81	7	64	41	17	5	36	1.72
56813954--56813980	6	4.5	6	100	0	54	37	14	33	14	1.88
56825849--56826090	47	5.3	44	70	18	129	45	3	3	46	1.38
56825849--56826055	92	2.3	92	91	0	326	45	3	3	46	1.39
56826072--56826487	120	3.5	119	96	1	735	44	2	5	47	1.40
56826145--56826449	63	5.1	59	65	23	188	43	2	6	47	1.43
56826432--56826467	18	2.0	18	88	0	54	47	0	2	50	1.15
56826700--56826753	16	3.4	16	89	0	81	29	33	1	35	1.69
56831845--56831896	16	3.2	16	88	0	77	23	3	34	38	1.73
56832132--56832166	18	2.0	17	88	5	52	54	0	0	45	0.99
56832026--56832334	157	2.0	156	96	0	564	44	3	4	47	1.40
56832269--56832310	15	2.7	16	82	14	52	52	2	0	45	1.13
56832278--56832316	15	2.7	15	88	7	55	53	0	0	46	1.00
56832387--56832438	15	3.6	15	80	12	56	53	1	0	44	1.11
56832272--56832785	120	4.3	120	96	1	919	49	5	2	42	1.38
56832507--56832678	15	11.6	15	65	21	60	50	4	1	43	1.33
56860091--56860183	25	3.7	25	76	0	78	32	20	25	21	1.98
56861505--56861616	25	4.5	25	74	14	99	19	25	19	34	1.96
56861489--56861584	50	1.9	50	89	4	149	21	27	17	33	1.96
56861639--56861691	25	2.1	25	86	6	72	20	28	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56876123--56876164	14	2.9	15	75	10	52	21	2	28	47	1.63
56883960--56884208	50	4.8	50	88	3	336	21	30	21	26	1.98
56889359--56889431	37	1.9	39	91	5	123	63	0	1	35	1.04
56906702--56906730	9	3.2	9	100	0	58	44	0	10	44	1.38
56906979--56907186	114	1.8	114	92	0	353	27	15	23	32	1.95
56908155--56908186	7	4.6	7	96	0	55	71	9	15	3	1.24
56912712--56912751	14	2.9	14	84	0	53	67	2	2	27	1.16
56915128--56915160	6	5.5	6	100	0	66	33	0	51	15	1.43
56917819--56917853	16	2.2	16	90	10	54	25	11	11	51	1.71
56917821--56917865	12	3.4	12	78	21	54	26	8	13	51	1.70
56920762--56920962	100	2.0	100	99	0	393	44	17	6	30	1.76
56921161--56921199	6	6.3	6	82	5	51	79	2	15	2	0.95
56922137--56922231	41	2.3	41	80	8	104	31	16	21	30	1.95
56924275--56924745	235	2.0	236	97	0	881	35	15	19	29	1.93
56925759--56925796	19	1.9	20	89	10	60	78	10	0	10	0.95
56926080--56926221	57	2.5	57	87	0	194	31	9	15	43	1.78
56929006--56929060	26	2.1	27	75	21	64	32	7	18	41	1.78
56929239--56929323	28	3.1	28	64	19	70	36	7	18	37	1.78
56929212--56929323	55	2.0	55	100	0	224	35	7	19	37	1.79
56929225--56929312	28	3.2	28	67	20	85	32	6	22	37	1.81
56930504--56930625	43	3.0	42	85	7	162	27	21	2	48	1.63
56934605--56934983	84	4.5	86	77	10	370	21	20	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56934606--56934983	44	8.9	43	78	9	352	20	20	23	34	1.96
56934606--56934983	128	3.0	128	88	1	571	20	20	23	34	1.96
56935232--56935316	43	2.0	43	86	6	118	32	25	14	27	1.94
56935242--56935387	44	3.3	43	83	8	154	32	26	14	27	1.95
56946937--56946984	24	2.0	24	83	0	60	50	6	12	31	1.65
56958420--56958475	26	2.2	26	100	0	112	21	37	7	33	1.81
56960876--56960914	15	2.6	15	84	11	53	87	7	5	0	0.68
56963489--56963543	24	2.4	24	82	17	73	38	0	1	60	1.08
56965890--56966991	322	3.4	324	89	4	1591	30	11	8	49	1.68
56967273--56967365	40	2.3	40	81	1	96	34	22	22	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211