genome.fa.s21.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Length:  65987480

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   

This is table  209  of  211  ( 25274 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64889854--64889894	18	2.3	18	86	0	55	39	0	21	39	1.54
64900967--64901052	32	2.7	33	82	8	90	45	9	9	36	1.69
64906069--64906131	30	2.1	30	88	5	92	26	6	12	53	1.62
64906177--64906299	63	2.0	63	98	0	237	26	3	13	56	1.52
64906318--64906351	11	3.0	12	87	12	54	67	0	0	32	0.91
64933747--64934214	118	3.9	123	78	9	480	21	14	22	41	1.89
64933747--64934211	242	1.9	239	81	9	566	21	13	23	41	1.89
64938841--64938876	6	6.0	6	86	0	54	13	55	0	30	1.39
64938840--64938875	18	2.0	18	94	0	63	11	58	0	30	1.33
64941017--64941080	32	2.0	32	90	0	101	45	9	21	23	1.81
64945711--64945771	22	2.8	22	76	9	54	60	6	16	16	1.55
64958348--64958431	13	5.7	13	70	24	60	55	4	2	36	1.34
64958338--64958446	31	3.5	31	84	2	139	52	7	3	36	1.47
64958676--64958898	112	2.0	115	83	5	292	31	14	16	37	1.89
64984501--64984532	12	2.7	12	95	0	55	34	9	25	31	1.87
64988297--64988337	21	2.0	20	85	4	55	41	0	21	36	1.54
64989766--64989812	21	2.2	22	92	3	78	53	8	14	23	1.69
64994796--64994883	31	2.8	32	77	9	85	44	7	12	35	1.72
64995609--64995656	11	4.6	11	82	12	57	33	0	2	64	1.05
64995609--64995653	19	2.3	20	88	3	65	33	0	2	64	1.06
64995671--64995728	30	1.9	30	82	6	73	48	0	1	50	1.11
65000338--65000446	57	1.9	55	85	7	148	43	7	14	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65002766--65002790	6	4.2	6	100	0	50	52	16	0	32	1.44
65009889--65009939	25	2.0	25	96	0	93	35	17	19	27	1.94
65014877--65015183	166	1.8	166	85	1	436	46	15	13	24	1.82
65015308--65015434	64	2.0	64	84	6	170	47	20	10	22	1.80
65016089--65016147	31	1.9	31	89	0	91	38	8	6	45	1.61
65023101--65023165	25	2.6	25	79	13	80	20	24	23	32	1.98
65025608--65025642	12	2.9	12	86	0	52	68	0	22	8	1.16
65027883--65027918	6	6.0	6	93	0	63	50	2	0	47	1.15
65030039--65030168	64	2.0	64	85	4	174	43	18	9	28	1.80
65034229--65034262	13	2.8	12	86	8	50	50	5	17	26	1.69
65036896--65037244	120	2.9	120	94	1	614	45	5	8	41	1.56
65037590--65037677	3	29.7	3	77	11	92	31	4	1	62	1.23
65038777--65039175	120	3.3	120	97	0	744	48	4	5	41	1.47
65042230--65042491	120	2.2	118	89	4	404	44	5	8	41	1.56
65047552--65047586	10	3.4	10	88	7	52	14	0	2	82	0.77
65052168--65052192	12	2.1	12	100	0	50	20	16	40	24	1.91
65053491--65053540	23	2.3	21	83	13	57	74	8	4	14	1.20
65053682--65053717	16	2.2	16	100	0	72	25	0	36	38	1.56
65053915--65053950	18	2.0	18	88	0	54	55	0	0	44	0.99
65054051--65054092	15	2.7	16	82	14	52	52	2	0	45	1.13
65053803--65054117	156	2.0	157	93	1	535	43	2	6	47	1.42
65054060--65054101	15	2.9	15	82	10	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65054049--65054346	120	2.5	121	93	3	512	50	4	2	42	1.37
65054170--65054221	15	3.6	15	80	12	56	53	1	0	44	1.11
65056764--65056804	6	6.8	6	94	0	73	31	0	65	2	1.05
65057233--65057258	4	6.5	4	100	0	52	73	0	0	26	0.84
65058031--65058068	20	1.9	19	85	15	51	55	0	10	34	1.34
65061015--65061054	22	1.9	22	90	10	66	50	0	2	47	1.14
65063036--65063094	24	2.5	23	84	10	75	1	37	0	61	1.07
65063036--65063094	23	2.6	23	82	15	68	1	37	0	61	1.07
65068750--65068883	39	3.5	37	75	12	101	29	27	21	20	1.98
65068787--65068884	41	2.5	37	74	11	90	31	27	21	19	1.97
65069011--65069056	23	2.0	24	82	4	58	32	26	0	41	1.56
65069942--65069981	18	2.2	19	91	8	66	12	12	0	75	1.06
65073000--65073025	2	13.0	2	100	0	52	50	0	0	50	1.00
65077032--65077294	139	1.9	141	84	6	354	49	8	8	33	1.65
65078414--65078458	23	2.0	23	82	4	56	62	0	17	20	1.33
65078981--65079019	14	2.8	13	92	7	60	30	0	0	69	0.89
65079926--65079972	22	2.2	22	85	11	62	70	4	8	17	1.29
65080175--65080235	14	4.4	14	78	17	65	63	0	1	34	1.04
65080175--65080246	13	5.5	12	75	16	54	61	0	2	36	1.11
65080152--65080246	41	2.2	43	81	5	113	62	0	2	35	1.07
65085484--65085524	8	5.0	8	82	5	55	43	14	0	41	1.45
65087974--65088084	58	1.9	58	88	0	168	36	9	22	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65089807--65089885	29	2.7	28	76	9	77	36	2	5	55	1.35
65089806--65089885	30	2.7	29	77	11	81	36	2	5	56	1.35
65100762--65100787	3	8.7	3	100	0	52	65	0	0	34	0.93
65106699--65106738	21	1.9	21	85	10	55	50	2	12	35	1.54
65107918--65107981	31	2.1	30	85	5	85	32	3	10	53	1.52
65112287--65112344	16	3.7	15	75	6	53	24	3	15	56	1.54
65120579--65120644	25	2.7	24	76	4	69	45	4	10	39	1.59
65121630--65121815	100	1.9	100	83	2	248	45	12	12	29	1.79
65121817--65121989	86	2.0	86	80	2	197	41	12	14	31	1.83
65131288--65131327	21	1.9	21	84	0	53	75	2	22	0	0.93
65131343--65131367	5	5.0	5	100	0	50	40	0	60	0	0.97
65134333--65134399	27	2.5	27	92	0	116	20	20	31	26	1.98
65135013--65135072	29	2.1	29	100	0	120	55	3	3	38	1.33
65135894--65135977	19	4.4	19	73	8	71	61	8	0	29	1.25
65135916--65135990	13	5.8	13	79	3	62	61	10	0	28	1.29
65142189--65142225	18	2.1	18	89	0	56	72	8	2	16	1.19
65152563--65152723	82	2.0	81	90	1	250	22	17	19	40	1.91
65156363--65156411	25	2.0	24	84	8	62	34	6	4	55	1.44
65156449--65156483	18	1.9	18	88	0	52	28	0	5	65	1.15
65156479--65156513	7	4.7	7	89	10	52	37	0	0	62	0.95
65161370--65161415	23	2.0	23	100	0	92	52	26	4	17	1.63
65161775--65161809	8	4.1	8	86	13	52	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65171867--65172218	140	2.5	140	78	5	363	24	24	15	35	1.95
65174608--65174839	116	2.0	114	89	6	353	50	14	5	30	1.64
65189622--65189653	16	1.9	17	93	6	57	40	0	0	59	0.97
65191560--65191599	11	3.5	11	82	3	53	52	0	0	47	1.00
65191680--65191711	12	2.6	13	85	14	50	50	0	0	50	1.00
65192926--65192971	14	2.9	16	78	15	51	69	0	2	28	1.00
65193751--65193790	14	2.9	14	84	0	53	32	7	17	42	1.77
65193774--65193813	20	2.0	20	90	0	62	27	10	12	50	1.72
65193759--65193825	34	1.9	35	87	3	100	32	8	11	46	1.72
65195106--65195160	24	2.2	26	78	12	62	58	5	5	30	1.44
65195655--65195689	15	2.2	16	95	5	63	57	2	0	40	1.14
65200256--65200295	13	3.2	13	85	3	55	62	7	2	27	1.35
65201263--65201843	116	5.0	115	88	3	833	40	14	12	32	1.83
65201258--65201843	232	2.5	232	93	2	980	40	14	12	32	1.83
65205416--65205456	18	2.2	20	86	8	59	51	0	0	48	1.00
65208931--65208975	23	2.0	22	82	4	54	35	4	0	60	1.17
65216825--65216888	33	1.9	33	87	6	94	26	25	21	26	2.00
65219602--65219666	29	2.2	30	83	2	78	35	12	13	38	1.83
65223720--65224195	159	3.0	159	83	1	596	31	16	21	30	1.95
65233342--65233529	102	1.9	102	89	1	297	31	14	10	43	1.78
65234173--65234197	12	2.1	12	100	0	50	56	8	0	36	1.29
65234935--65235008	30	2.4	31	80	6	80	20	10	20	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65239347--65239390	16	2.9	14	84	15	61	65	2	0	31	1.05
65242670--65242727	29	2.0	29	86	6	82	46	10	8	34	1.69
65243577--65243651	35	2.1	35	85	0	96	48	8	16	28	1.74
65248587--65248620	2	17.0	2	87	0	50	44	0	5	50	1.26
65248587--65248620	14	2.4	14	100	0	68	44	0	5	50	1.26
65248984--65249019	19	1.9	19	88	5	56	30	5	8	55	1.52
65253131--65253182	15	3.4	15	86	5	77	36	0	7	55	1.29
65253129--65253180	16	3.3	16	86	5	79	36	0	7	55	1.29
65259801--65259877	20	3.8	20	76	13	77	31	2	1	64	1.15
65259801--65259969	9	18.2	9	68	18	80	35	1	2	60	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211